Wall clock time and date at job start Mon Mar 30 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.46964 * 2 1 4 4 C 1.46898 * 111.00378 * 287.85717 * 3 2 1 5 5 C 1.50705 * 109.46878 * 296.45816 * 4 3 2 6 6 H 1.07995 * 120.00105 * 4.38598 * 5 4 3 7 7 C 1.37876 * 119.99886 * 184.37590 * 5 4 3 8 8 N 1.31517 * 120.00174 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46916 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47147 * 119.99879 * 9 7 5 12 12 H 1.48493 * 109.47355 * 240.00545 * 9 7 5 13 13 C 1.46904 * 110.99962 * 163.90021 * 3 2 1 14 14 H 1.09002 * 109.46619 * 58.39946 * 13 3 2 15 15 C 1.50701 * 109.47047 * 298.40047 * 13 3 2 16 16 C 1.39867 * 126.03930 * 319.68656 * 15 13 3 17 17 N 1.30837 * 108.20222 * 179.81959 * 16 15 13 18 18 N 1.40087 * 108.20243 * 0.44246 * 17 16 15 19 19 C 1.46497 * 126.03566 * 179.74002 * 18 17 16 20 20 C 1.34943 * 107.92759 * 359.71816 * 18 17 16 21 21 C 1.52998 * 109.47254 * 178.39398 * 13 3 2 22 22 H 1.09001 * 109.47606 * 300.00567 * 21 13 3 23 23 C 1.52997 * 109.47203 * 180.02562 * 21 13 3 24 24 N 1.46902 * 109.46641 * 60.00351 * 21 13 3 25 25 H 1.09005 * 109.47078 * 300.12248 * 1 2 3 26 26 H 1.08999 * 109.47230 * 180.12962 * 1 2 3 27 27 H 1.09000 * 109.47678 * 60.12431 * 1 2 3 28 28 H 1.09000 * 109.47555 * 120.00416 * 2 1 3 29 29 H 1.09001 * 109.46586 * 240.00598 * 2 1 3 30 30 H 1.08998 * 109.47534 * 56.45676 * 4 3 2 31 31 H 1.08996 * 109.47383 * 176.46063 * 4 3 2 32 32 H 0.96999 * 120.00206 * 180.02562 * 8 7 5 33 33 H 1.08000 * 125.89990 * 0.02562 * 16 15 13 34 34 H 1.09004 * 109.47252 * 269.97147 * 19 18 17 35 35 H 1.09002 * 109.47409 * 29.97470 * 19 18 17 36 36 H 1.09006 * 109.47180 * 149.97400 * 19 18 17 37 37 H 1.08006 * 126.12986 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47210 * 62.50109 * 23 21 13 39 39 H 1.08997 * 109.47544 * 182.50742 * 23 21 13 40 40 H 1.09003 * 109.47363 * 302.50651 * 23 21 13 41 41 H 1.00892 * 111.00360 * 299.99598 * 24 21 13 42 42 H 1.00900 * 111.00359 * 63.95475 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7986 2.0216 -1.3053 5 6 2.6020 1.3016 -2.3577 6 1 3.1592 0.4137 -2.0982 7 6 2.6254 1.7765 -3.6519 8 7 1.9471 2.8581 -3.9679 9 14 3.6206 0.8839 -4.9565 10 1 4.2871 -0.2962 -4.3494 11 1 2.7179 0.4353 -6.0469 12 1 4.6476 1.8023 -5.5103 13 6 3.4374 1.4421 0.3803 14 1 4.0241 0.8395 -0.3131 15 6 3.6045 0.9048 1.7783 16 6 2.7471 1.1397 2.8582 17 7 3.2193 0.5052 3.9004 18 7 4.3994 -0.1461 3.5187 19 6 5.2501 -0.9660 4.3848 20 6 4.6138 0.1148 2.2122 21 6 3.9208 2.8929 0.3302 22 1 3.7999 3.2815 -0.6809 23 6 5.3976 2.9523 0.7257 24 7 3.1301 3.7049 1.2647 25 1 -0.3633 0.5158 0.8889 26 1 -0.3633 -1.0276 0.0023 27 1 -0.3634 0.5119 -0.8911 28 1 1.8934 -0.5139 0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 0.7398 1.9718 -1.5593 31 1 2.1124 3.0643 -1.2588 32 1 1.9633 3.1919 -4.8784 33 1 1.8486 1.7383 2.8347 34 1 6.0046 -0.3354 4.8553 35 1 4.6385 -1.4367 5.1546 36 1 5.7403 -1.7360 3.7890 37 1 5.4423 -0.2433 1.6190 38 1 5.9894 2.3862 0.0064 39 1 5.7303 3.9902 0.7332 40 1 5.5253 2.5227 1.7193 41 1 2.1505 3.6819 1.0243 42 1 3.2758 3.4051 2.2171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249822316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:16 Heat of formation + Delta-G solvation = 62.535732 kcal Electronic energy + Delta-G solvation = -21757.933152 eV Core-core repulsion = 18773.952639 eV Total energy + Delta-G solvation = -2983.980514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.24679 -39.40544 -36.10450 -34.55249 -33.87008 -31.71018 -31.09443 -29.53196 -28.89618 -27.31869 -25.58665 -24.83874 -22.00014 -21.93398 -21.50926 -20.16272 -18.42272 -17.57149 -17.03062 -16.73774 -16.18697 -16.01734 -15.63532 -15.41993 -15.22152 -14.88121 -14.31421 -14.06290 -13.63777 -13.52099 -13.39887 -13.23240 -13.12347 -12.91928 -12.86202 -12.59575 -12.51418 -12.38076 -11.96329 -11.90889 -11.73056 -11.62844 -11.46067 -11.16849 -10.50633 -10.25875 -9.51809 -9.05784 -8.86597 -8.07004 -6.24640 1.00798 1.36539 1.39161 1.48571 1.77286 1.92518 2.41071 3.17903 3.34367 3.76493 4.03211 4.08266 4.23570 4.39989 4.43527 4.49224 4.54338 4.62514 4.66103 4.72765 4.73950 4.76246 4.84322 5.01580 5.03321 5.11474 5.21595 5.29450 5.34321 5.40876 5.45898 5.48753 5.54344 5.77418 5.87420 6.17022 6.20697 6.38569 6.51400 6.67318 6.84113 6.87266 6.98498 7.45655 8.94181 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.006310 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.793390 B = 4436.455446 C = 4599.486359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 N -0.522 5.522 4 C 0.199 3.801 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.923 5.923 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.146 3.854 14 H 0.025 0.975 15 C -0.223 4.223 16 C 0.065 3.935 17 N -0.326 5.326 18 N -0.376 5.376 19 C 0.095 3.905 20 C 0.056 3.944 21 C 0.103 3.897 22 H 0.054 0.946 23 C -0.129 4.129 24 N -0.832 5.832 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.003 0.997 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.178 0.822 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.191 0.809 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.342 0.658 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -7.180 14.158 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 N -0.246 5.246 4 C 0.072 3.928 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.564 5.564 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.034 3.966 14 H 0.043 0.957 15 C -0.235 4.235 16 C -0.120 4.120 17 N -0.149 5.149 18 N -0.159 5.159 19 C -0.045 4.045 20 C -0.092 4.092 21 C -0.010 4.010 22 H 0.072 0.928 23 C -0.187 4.187 24 N -0.361 5.361 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.195 0.805 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.208 0.792 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.027 -6.561 15.461 18.206 hybrid contribution 0.293 -1.400 -2.568 2.939 sum 7.320 -7.961 12.894 16.829 Atomic orbital electron populations 1.21621 0.95094 1.00994 1.01234 1.21807 0.95878 0.90014 0.98736 1.62398 1.16199 1.16374 1.29590 1.19476 0.94712 0.94275 0.84295 1.21940 1.29625 1.11342 0.95309 0.93059 1.25669 0.96527 0.95568 1.00603 1.70062 1.42927 1.23626 1.19753 0.85694 0.78776 0.78835 0.79492 1.19267 1.20930 1.20612 1.20287 0.89478 0.96825 0.90028 0.95701 1.19900 0.98972 1.08126 0.96535 1.23654 0.99843 0.98806 0.89746 1.77273 0.98837 1.14670 1.24121 1.48695 1.19296 1.39697 1.08215 1.22150 0.93225 0.94325 0.94773 1.22560 1.00947 0.99487 0.86174 1.21255 0.93856 0.89731 0.96108 0.92788 1.21678 0.94236 1.01638 1.01189 1.59073 1.13576 1.57707 1.05787 0.92020 0.91904 0.94681 0.91908 0.96707 0.97873 0.96161 0.92932 0.80517 0.89554 0.89092 0.87287 0.79236 0.92477 0.92516 0.92167 0.84491 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.96 71.98 0.72 -3.84 16 2 C 0.06 2.43 5.34 86.30 0.46 2.89 16 3 N -0.52 -20.71 3.62 -879.93 -3.19 -23.90 16 4 C 0.20 9.88 4.42 85.56 0.38 10.26 16 5 C -0.54 -28.96 7.46 25.60 0.19 -28.77 16 6 H 0.05 2.73 5.92 -2.91 -0.02 2.72 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.92 -54.15 13.29 21.45 0.28 -53.86 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 C 0.15 5.26 1.40 44.17 0.06 5.32 16 14 H 0.03 1.03 6.76 -2.39 -0.02 1.01 16 15 C -0.22 -6.67 2.22 -20.14 -0.04 -6.71 16 16 C 0.06 1.91 9.54 85.24 0.81 2.73 16 17 N -0.33 -9.38 12.58 -57.02 -0.72 -10.09 16 18 N -0.38 -8.73 4.01 -369.55 -1.48 -10.21 16 19 C 0.10 1.23 11.47 127.77 1.47 2.70 16 20 C 0.06 1.38 10.61 83.54 0.89 2.27 16 21 C 0.10 3.76 2.69 44.91 0.12 3.88 16 22 H 0.05 2.47 6.30 -2.39 -0.02 2.46 16 23 C -0.13 -3.93 9.22 71.98 0.66 -3.26 16 24 N -0.83 -28.17 9.07 -168.68 -1.53 -29.70 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.37 6.71 -2.39 -0.02 1.36 16 28 H 0.06 2.22 6.46 -2.39 -0.02 2.21 16 29 H 0.01 0.64 6.34 -2.39 -0.02 0.62 16 30 H 0.00 0.18 6.59 -2.39 -0.02 0.16 16 31 H 0.02 1.10 6.06 -2.39 -0.01 1.09 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.18 5.17 8.01 -2.91 -0.02 5.15 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.66 6.56 -2.39 -0.02 1.64 16 41 H 0.34 12.33 8.21 -89.70 -0.74 11.59 16 42 H 0.33 10.33 6.74 -89.69 -0.60 9.72 16 Total: -1.00 -62.97 327.24 1.25 -61.72 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.31 Total: 31.80 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 6.18 Total: -11.23 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.63 Total: -127.77 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.97 1.25 -61.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.252 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds