Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46882 * 2 1 4 4 C 1.52998 * 109.47138 * 239.99716 * 2 1 3 5 5 C 1.52996 * 109.47105 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47266 * 60.00262 * 5 4 2 7 7 H 1.08999 * 109.47026 * 59.99717 * 6 5 4 8 8 N 1.46895 * 109.47513 * 180.02562 * 6 5 4 9 9 C 1.46895 * 110.99976 * 59.30075 * 8 6 5 10 10 C 1.53241 * 109.34099 * 172.74948 * 9 8 6 11 11 N 1.47080 * 108.52299 * 53.82793 * 10 9 8 12 12 C 1.36940 * 120.88189 * 128.83769 * 11 10 9 13 13 H 1.07995 * 120.00160 * 206.63086 * 12 11 10 14 14 C 1.38813 * 120.00064 * 26.62399 * 12 11 10 15 15 N 1.31619 * 119.99834 * 17.03965 * 14 12 11 16 16 Si 1.86797 * 120.00358 * 197.04198 * 14 12 11 17 17 H 1.48505 * 109.46967 * 59.99781 * 16 14 12 18 18 H 1.48500 * 109.47454 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46829 * 300.00320 * 16 14 12 20 20 C 1.47075 * 118.23801 * 308.81747 * 11 10 9 21 21 C 1.46906 * 111.00071 * 295.00253 * 8 6 5 22 22 C 1.53009 * 109.46994 * 300.00216 * 6 5 4 23 23 C 1.52994 * 109.46836 * 119.99992 * 2 1 3 24 24 H 1.09008 * 109.47239 * 60.00059 * 23 2 1 25 25 C 1.52999 * 109.47529 * 299.99980 * 23 2 1 26 26 H 1.08996 * 109.47419 * 300.00253 * 1 2 3 27 27 H 1.09003 * 109.46843 * 60.00559 * 1 2 3 28 28 H 1.09008 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47162 * 300.00323 * 4 2 1 30 30 H 1.09007 * 109.47074 * 60.00408 * 4 2 1 31 31 H 1.09003 * 109.47173 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.47330 * 300.00165 * 5 4 2 33 33 H 1.09007 * 109.49521 * 292.70558 * 9 8 6 34 34 H 1.09001 * 109.49795 * 52.79069 * 9 8 6 35 35 H 1.08998 * 109.62859 * 294.11773 * 10 9 8 36 36 H 1.09006 * 109.78686 * 173.63286 * 10 9 8 37 37 H 0.96995 * 120.00061 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.63051 * 291.47524 * 20 11 10 39 39 H 1.08998 * 109.79249 * 170.98629 * 20 11 10 40 40 H 1.09005 * 109.48718 * 307.20903 * 21 8 6 41 41 H 1.08996 * 109.49400 * 67.28852 * 21 8 6 42 42 H 1.08999 * 109.46827 * 299.99623 * 22 6 5 43 43 H 1.08999 * 109.46751 * 180.02562 * 22 6 5 44 44 H 1.09003 * 109.47022 * 59.99764 * 25 23 2 45 45 H 1.09004 * 109.47229 * 300.00668 * 25 23 2 46 46 H 1.08994 * 109.47765 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4710 0.0001 8 7 5.5485 -1.4435 0.0010 9 6 6.0749 -0.0722 -0.0151 10 6 7.5958 -0.1103 0.1686 11 7 8.1668 -1.0076 -0.8473 12 6 9.2024 -0.5984 -1.6443 13 1 9.3366 -1.0360 -2.6225 14 6 10.0797 0.3791 -1.1950 15 7 10.1370 0.6732 0.0866 16 14 11.1790 1.2772 -2.4093 17 1 10.3385 1.9821 -3.4103 18 1 12.0168 2.2645 -1.6823 19 1 12.0559 0.2983 -3.1007 20 6 7.5963 -2.3563 -0.9841 21 6 6.0754 -2.2297 -1.1224 22 6 3.5694 -0.7222 1.2496 23 6 2.0400 -0.7212 1.2492 24 1 1.6766 -1.7490 1.2492 25 6 1.5300 0.0000 2.4985 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9334 -1.2353 -2.1391 32 1 3.9338 0.3057 -1.2486 33 1 5.8354 0.3983 -0.9688 34 1 5.6248 0.4998 0.7963 35 1 7.8352 -0.4846 1.1639 36 1 8.0076 0.8915 0.0453 37 1 10.7502 1.3559 0.4006 38 1 7.8357 -2.9466 -0.0996 39 1 8.0054 -2.8419 -1.8700 40 1 5.6256 -3.2226 -1.1141 41 1 5.8359 -1.7293 -2.0606 42 1 3.9332 0.3053 1.2499 43 1 3.9328 -1.2360 2.1396 44 1 0.4400 0.0000 2.4984 45 1 1.8933 1.0277 2.4985 46 1 1.8936 -0.5136 3.3885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251525391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = 5.457100 kcal Electronic energy + Delta-G solvation = -21792.224145 eV Core-core repulsion = 18909.308860 eV Total energy + Delta-G solvation = -2882.915285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76986 -37.38177 -34.56311 -32.20286 -31.89079 -30.21833 -29.83298 -27.36788 -26.18367 -24.56731 -22.92513 -22.60084 -21.74899 -20.36341 -19.62922 -18.52133 -16.60373 -15.43164 -15.06733 -14.72061 -14.56154 -14.26783 -14.10509 -13.92856 -13.53306 -13.26975 -13.16363 -12.86081 -12.38652 -12.36065 -12.05578 -11.84952 -11.72026 -11.43565 -11.20519 -11.05170 -10.89867 -10.77813 -10.69714 -10.51646 -10.41765 -10.26536 -10.09344 -9.97884 -9.78120 -9.63404 -9.43836 -8.45306 -7.63016 -6.60326 -5.73522 -3.14297 3.40731 3.46328 3.47605 4.38116 4.53956 4.62824 4.72620 4.92607 5.06624 5.15998 5.38279 5.40681 5.44141 5.48914 5.50247 5.54276 5.58308 5.67850 5.74461 5.79239 5.86690 5.90399 5.97102 5.99281 6.04239 6.10867 6.16611 6.18764 6.25516 6.30998 6.35482 6.36798 6.46042 6.49164 6.60374 6.68396 6.79975 7.00605 7.33009 7.71585 7.75286 7.80406 7.89895 8.48519 9.26277 9.90020 10.48992 11.35153 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.004453 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.083788 B = 6286.564591 C = 6363.705959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.152 4.152 6 C 0.086 3.914 7 H 0.072 0.928 8 N -0.527 5.527 9 C 0.032 3.968 10 C 0.178 3.822 11 N -0.595 5.595 12 C -0.252 4.252 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.149 3.851 21 C 0.044 3.956 22 C -0.106 4.106 23 C -0.084 4.084 24 H 0.067 0.933 25 C -0.148 4.148 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.299 -2.146 1.205 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.192 4.192 6 C -0.023 4.023 7 H 0.090 0.910 8 N -0.250 5.250 9 C -0.096 4.096 10 C 0.052 3.948 11 N -0.318 5.318 12 C -0.381 4.381 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.731 3.269 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.103 4.103 24 H 0.085 0.915 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.975 -2.254 1.722 18.197 hybrid contribution 0.332 0.888 -1.394 1.685 sum -17.643 -1.367 0.328 17.699 Atomic orbital electron populations 1.21891 0.95688 1.01547 1.01395 1.21173 0.94970 0.99696 0.94758 0.91377 1.21513 0.95630 1.00245 0.97162 1.22231 0.95434 1.01861 0.99628 1.21709 0.88507 0.98617 0.93469 0.91027 1.62185 1.04811 1.14339 1.43642 1.22929 0.99812 0.88122 0.98785 1.20862 0.86106 0.96623 0.91233 1.44100 1.37460 1.08649 1.41605 1.19157 1.03753 1.19658 0.95556 0.91790 1.25003 0.97446 1.01797 0.95440 1.70023 1.39028 1.33853 1.11927 0.86383 0.80240 0.79659 0.80571 1.21159 1.21617 1.20931 1.20967 0.89778 0.88501 0.98555 1.22599 0.98323 0.96133 0.91495 1.21646 0.93638 1.01087 0.97996 1.21118 0.95608 0.99342 0.94207 0.91488 1.21876 1.00618 1.00571 0.97430 0.92517 0.93085 0.92909 0.92302 0.92519 0.92105 0.91684 0.95596 0.91967 0.95789 0.89556 0.93632 0.95833 0.92840 0.92347 0.95301 0.91701 0.91309 0.92708 0.92789 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 2 C -0.09 -0.90 2.25 -90.62 -0.20 -1.11 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 5 C -0.15 -2.09 4.52 -26.74 -0.12 -2.21 16 6 C 0.09 1.25 2.23 -67.71 -0.15 1.10 16 7 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 8 N -0.53 -9.54 4.61 -226.34 -1.04 -10.58 16 9 C 0.03 0.65 4.76 -3.70 -0.02 0.63 16 10 C 0.18 4.40 5.42 -3.60 -0.02 4.38 16 11 N -0.59 -15.45 3.04 -172.02 -0.52 -15.98 16 12 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 13 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 15 N -0.90 -26.66 11.15 55.49 0.62 -26.04 16 16 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.15 3.27 6.69 -3.60 -0.02 3.25 16 21 C 0.04 0.81 5.14 -3.70 -0.02 0.80 16 22 C -0.11 -1.38 4.29 -26.75 -0.11 -1.50 16 23 C -0.08 -0.89 2.24 -90.65 -0.20 -1.09 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 C -0.15 -1.40 8.84 37.16 0.33 -1.07 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.88 6.69 -51.93 -0.35 0.54 16 32 H 0.06 0.98 6.56 -51.93 -0.34 0.64 16 33 H 0.03 0.54 6.71 -51.93 -0.35 0.19 16 34 H 0.06 1.14 5.97 -51.93 -0.31 0.83 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 2.36 6.11 -51.93 -0.32 2.04 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 1.13 7.96 -51.93 -0.41 0.72 16 40 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 41 H 0.03 0.55 6.81 -51.93 -0.35 0.20 16 42 H 0.06 0.91 6.26 -51.93 -0.33 0.59 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -29.18 332.51 -10.01 -39.20 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.46 Total: -2.20 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.59 Total: -6.37 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.95 Total: -52.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.18 -10.01 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251525391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.653 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds