Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46882 * 2 1 4 4 C 1.52998 * 109.47138 * 239.99716 * 2 1 3 5 5 C 1.52996 * 109.47105 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47266 * 60.00262 * 5 4 2 7 7 H 1.08999 * 109.47026 * 59.99717 * 6 5 4 8 8 N 1.46895 * 109.47513 * 180.02562 * 6 5 4 9 9 C 1.46895 * 110.99976 * 59.30075 * 8 6 5 10 10 C 1.53241 * 109.34099 * 172.74948 * 9 8 6 11 11 N 1.47080 * 108.52299 * 53.82793 * 10 9 8 12 12 C 1.36940 * 120.88189 * 128.83769 * 11 10 9 13 13 H 1.07995 * 120.00160 * 206.63086 * 12 11 10 14 14 C 1.38813 * 120.00064 * 26.62399 * 12 11 10 15 15 N 1.31619 * 119.99834 * 17.03965 * 14 12 11 16 16 Si 1.86797 * 120.00358 * 197.04198 * 14 12 11 17 17 H 1.48505 * 109.46967 * 59.99781 * 16 14 12 18 18 H 1.48500 * 109.47454 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46829 * 300.00320 * 16 14 12 20 20 C 1.47075 * 118.23801 * 308.81747 * 11 10 9 21 21 C 1.46906 * 111.00071 * 295.00253 * 8 6 5 22 22 C 1.53009 * 109.46994 * 300.00216 * 6 5 4 23 23 C 1.52994 * 109.46836 * 119.99992 * 2 1 3 24 24 H 1.09008 * 109.47239 * 60.00059 * 23 2 1 25 25 C 1.52999 * 109.47529 * 299.99980 * 23 2 1 26 26 H 1.08996 * 109.47419 * 300.00253 * 1 2 3 27 27 H 1.09003 * 109.46843 * 60.00559 * 1 2 3 28 28 H 1.09008 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47162 * 300.00323 * 4 2 1 30 30 H 1.09007 * 109.47074 * 60.00408 * 4 2 1 31 31 H 1.09003 * 109.47173 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.47330 * 300.00165 * 5 4 2 33 33 H 1.09007 * 109.49521 * 292.70558 * 9 8 6 34 34 H 1.09001 * 109.49795 * 52.79069 * 9 8 6 35 35 H 1.08998 * 109.62859 * 294.11773 * 10 9 8 36 36 H 1.09006 * 109.78686 * 173.63286 * 10 9 8 37 37 H 0.96995 * 120.00061 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.63051 * 291.47524 * 20 11 10 39 39 H 1.08998 * 109.79249 * 170.98629 * 20 11 10 40 40 H 1.09005 * 109.48718 * 307.20903 * 21 8 6 41 41 H 1.08996 * 109.49400 * 67.28852 * 21 8 6 42 42 H 1.08999 * 109.46827 * 299.99623 * 22 6 5 43 43 H 1.08999 * 109.46751 * 180.02562 * 22 6 5 44 44 H 1.09003 * 109.47022 * 59.99764 * 25 23 2 45 45 H 1.09004 * 109.47229 * 300.00668 * 25 23 2 46 46 H 1.08994 * 109.47765 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4710 0.0001 8 7 5.5485 -1.4435 0.0010 9 6 6.0749 -0.0722 -0.0151 10 6 7.5958 -0.1103 0.1686 11 7 8.1668 -1.0076 -0.8473 12 6 9.2024 -0.5984 -1.6443 13 1 9.3366 -1.0360 -2.6225 14 6 10.0797 0.3791 -1.1950 15 7 10.1370 0.6732 0.0866 16 14 11.1790 1.2772 -2.4093 17 1 10.3385 1.9821 -3.4103 18 1 12.0168 2.2645 -1.6823 19 1 12.0559 0.2983 -3.1007 20 6 7.5963 -2.3563 -0.9841 21 6 6.0754 -2.2297 -1.1224 22 6 3.5694 -0.7222 1.2496 23 6 2.0400 -0.7212 1.2492 24 1 1.6766 -1.7490 1.2492 25 6 1.5300 0.0000 2.4985 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9334 -1.2353 -2.1391 32 1 3.9338 0.3057 -1.2486 33 1 5.8354 0.3983 -0.9688 34 1 5.6248 0.4998 0.7963 35 1 7.8352 -0.4846 1.1639 36 1 8.0076 0.8915 0.0453 37 1 10.7502 1.3559 0.4006 38 1 7.8357 -2.9466 -0.0996 39 1 8.0054 -2.8419 -1.8700 40 1 5.6256 -3.2226 -1.1141 41 1 5.8359 -1.7293 -2.0606 42 1 3.9332 0.3053 1.2499 43 1 3.9328 -1.2360 2.1396 44 1 0.4400 0.0000 2.4984 45 1 1.8933 1.0277 2.4985 46 1 1.8936 -0.5136 3.3885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251525391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = -11.062217 kcal Electronic energy + Delta-G solvation = -21792.940477 eV Core-core repulsion = 18909.308860 eV Total energy + Delta-G solvation = -2883.631617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95791 -38.80154 -36.22163 -33.69873 -33.05655 -31.69149 -31.60115 -28.58945 -27.58817 -25.81203 -24.58905 -24.30199 -22.72278 -21.75438 -20.63926 -20.09521 -18.55398 -17.09562 -16.48437 -16.07538 -15.72350 -15.55033 -15.38911 -15.17082 -15.09310 -14.92407 -14.74710 -14.09757 -13.67068 -13.53785 -13.15516 -12.97079 -12.87178 -12.70143 -12.64155 -12.59360 -12.37084 -12.23357 -12.09071 -12.04085 -11.86315 -11.69690 -11.51552 -11.37476 -11.23732 -10.92069 -10.80710 -10.57871 -9.13709 -8.66771 -7.88074 -5.33028 1.45291 1.47807 1.54952 2.50060 3.02033 3.27055 3.66908 3.72047 3.81176 3.98003 4.10133 4.17738 4.32102 4.35055 4.44122 4.51379 4.56028 4.58576 4.62877 4.67444 4.71393 4.78028 4.79343 4.86586 4.93121 4.97449 5.01503 5.05901 5.13931 5.16419 5.20795 5.22552 5.24848 5.34582 5.36415 5.39028 5.52499 5.57669 5.60049 5.67240 5.68290 6.24790 6.36841 6.38372 7.12391 7.83289 8.38097 9.18551 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.004453 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.083788 B = 6286.564591 C = 6363.705959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.056 0.944 4 C -0.102 4.102 5 C -0.147 4.147 6 C 0.088 3.912 7 H 0.085 0.915 8 N -0.536 5.536 9 C 0.054 3.946 10 C 0.186 3.814 11 N -0.613 5.613 12 C -0.268 4.268 13 H 0.067 0.933 14 C -0.050 4.050 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.274 1.274 20 C 0.144 3.856 21 C 0.056 3.944 22 C -0.102 4.102 23 C -0.077 4.077 24 H 0.076 0.924 25 C -0.146 4.146 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.018 0.982 34 H 0.077 0.923 35 H -0.005 1.005 36 H 0.054 0.946 37 H 0.250 0.750 38 H 0.014 0.986 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 -2.718 0.488 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.140 4.140 5 C -0.186 4.186 6 C -0.020 4.020 7 H 0.104 0.896 8 N -0.260 5.260 9 C -0.075 4.075 10 C 0.060 3.940 11 N -0.338 5.338 12 C -0.398 4.398 13 H 0.085 0.915 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.200 1.200 20 C 0.018 3.982 21 C -0.073 4.073 22 C -0.140 4.140 23 C -0.096 4.096 24 H 0.094 0.906 25 C -0.203 4.203 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.244 -2.850 0.995 20.468 hybrid contribution 1.033 1.002 -1.143 1.837 sum -19.211 -1.849 -0.148 19.300 Atomic orbital electron populations 1.21849 0.93957 1.02252 1.02025 1.21153 0.96354 0.98848 0.94113 0.92500 1.21482 0.93350 1.01211 0.97915 1.22145 0.97515 1.00299 0.98606 1.21807 0.85802 0.99784 0.94621 0.89648 1.62133 1.07431 1.12809 1.43608 1.22536 0.96377 0.89735 0.98870 1.20618 0.89195 0.94565 0.89612 1.44380 1.37498 1.10422 1.41456 1.19516 1.04272 1.19950 0.96033 0.91548 1.25798 0.99122 1.02607 0.97025 1.70191 1.39921 1.34327 1.13738 0.85318 0.78379 0.78295 0.78315 1.20507 1.21813 1.20004 1.21127 0.92249 0.86553 0.98280 1.22429 0.95731 0.97786 0.91387 1.21617 0.95695 0.99803 0.96898 1.21075 0.93427 1.00125 0.95006 0.90574 1.21859 1.01616 1.00037 0.96786 0.91791 0.92664 0.92125 0.91110 0.91863 0.92933 0.93590 0.96372 0.90524 0.98717 0.92738 0.94052 0.96836 0.92271 0.89196 0.95719 0.93101 0.92026 0.91089 0.93346 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.84 71.98 0.64 -1.38 16 2 C -0.09 -1.56 2.25 -10.79 -0.02 -1.58 16 3 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.10 -1.98 5.20 30.59 0.16 -1.83 16 5 C -0.15 -3.78 4.52 30.59 0.14 -3.64 16 6 C 0.09 2.39 2.23 44.92 0.10 2.49 16 7 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 8 N -0.54 -19.03 4.61 -869.99 -4.01 -23.05 16 9 C 0.05 2.19 4.76 86.38 0.41 2.60 16 10 C 0.19 9.58 5.42 86.35 0.47 10.05 16 11 N -0.61 -32.62 3.04 -698.14 -2.12 -34.74 16 12 C -0.27 -15.32 9.63 84.03 0.81 -14.51 16 13 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 14 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16 15 N -0.94 -56.98 11.15 21.65 0.24 -56.74 16 16 Si 0.97 45.84 29.59 68.60 2.03 47.86 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.14 6.33 6.69 86.35 0.58 6.90 16 21 C 0.06 2.00 5.14 86.38 0.44 2.44 16 22 C -0.10 -2.53 4.29 30.58 0.13 -2.40 16 23 C -0.08 -1.45 2.24 -10.81 -0.02 -1.47 16 24 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 25 C -0.15 -2.42 8.84 71.98 0.64 -1.78 16 26 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.44 6.69 -2.39 -0.02 1.42 16 32 H 0.05 1.36 6.56 -2.39 -0.02 1.34 16 33 H 0.02 0.76 6.71 -2.38 -0.02 0.75 16 34 H 0.08 2.86 5.97 -2.39 -0.01 2.84 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.05 3.13 6.11 -2.38 -0.01 3.11 16 37 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 40 H 0.09 2.67 8.05 -2.38 -0.02 2.65 16 41 H 0.02 0.91 6.81 -2.39 -0.02 0.90 16 42 H 0.05 1.39 6.26 -2.39 -0.01 1.38 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 0.96 6.43 -2.39 -0.02 0.94 16 45 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -63.86 332.51 1.94 -61.93 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.92 Total: 11.30 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 4.88 Total: -6.56 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -5.89 Total: -114.53 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -63.86 1.94 -61.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251525391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.864 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds