Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00029 * 2 1 4 4 C 1.50705 * 109.46873 * 90.00381 * 3 2 1 5 5 H 1.08001 * 119.99958 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99569 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00579 * 359.72418 * 6 4 3 8 8 Si 1.86804 * 119.99541 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46977 * 269.72102 * 8 6 4 10 10 H 1.48491 * 109.47145 * 29.72599 * 8 6 4 11 11 H 1.48500 * 109.47143 * 149.72491 * 8 6 4 12 12 C 1.34779 * 120.00228 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00048 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99483 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.47016 * 180.02562 * 14 12 2 16 16 N 1.46893 * 109.47004 * 175.49021 * 15 14 12 17 17 C 1.50620 * 110.99891 * 174.49032 * 16 15 14 18 18 C 1.50040 * 82.13950 * 203.47140 * 17 16 15 19 19 H 1.09000 * 114.63731 * 290.43698 * 18 17 16 20 20 C 1.52113 * 128.13437 * 132.58284 * 18 17 16 21 21 C 1.58437 * 100.71371 * 232.99994 * 20 18 17 22 22 C 1.55690 * 105.25623 * 25.61863 * 21 20 18 23 23 C 1.42695 * 111.00443 * 86.81331 * 16 15 14 24 24 H 1.09004 * 111.44001 * 41.29643 * 23 16 15 25 25 H 1.09006 * 109.47195 * 89.99355 * 1 2 3 26 26 H 1.08999 * 109.47348 * 210.00212 * 1 2 3 27 27 H 1.09004 * 109.47039 * 329.99613 * 1 2 3 28 28 H 1.08992 * 109.47036 * 330.00218 * 3 2 1 29 29 H 1.09000 * 109.47192 * 209.99914 * 3 2 1 30 30 H 0.97003 * 119.99700 * 0.27048 * 7 6 4 31 31 H 1.09004 * 109.47341 * 299.99456 * 14 12 2 32 32 H 1.08995 * 109.47472 * 59.99924 * 14 12 2 33 33 H 1.09005 * 109.46849 * 295.48800 * 15 14 12 34 34 H 1.08998 * 109.47266 * 55.48620 * 15 14 12 35 35 H 1.09003 * 114.42605 * 316.78438 * 17 16 15 36 36 H 1.08994 * 114.43127 * 90.14852 * 17 16 15 37 37 H 1.08998 * 110.96680 * 351.21247 * 20 18 17 38 38 H 1.09005 * 110.96508 * 114.95527 * 20 18 17 39 39 H 1.09007 * 109.70517 * 266.87452 * 21 20 18 40 40 H 1.09001 * 110.70085 * 144.87959 * 21 20 18 41 41 H 1.08998 * 110.49246 * 249.97806 * 22 21 20 42 42 H 1.09002 * 110.60305 * 127.37453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0975 1.0961 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5576 3.6156 0.6733 8 14 3.4368 3.4174 3.4340 9 1 2.3096 4.2655 3.8981 10 1 3.5476 2.2206 4.3060 11 1 4.7003 4.1950 3.4979 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4722 -0.0017 15 6 2.3796 -3.6352 -0.0014 16 7 1.6482 -4.9046 0.1063 17 6 2.5826 -6.0787 -0.0247 18 6 1.3196 -6.7741 -0.4402 19 1 0.5962 -6.9200 0.3620 20 6 1.0980 -7.6804 -1.6416 21 6 -0.1581 -6.9828 -2.3091 22 6 -0.0895 -5.4949 -1.8557 23 6 1.2510 -5.3769 -1.1803 24 1 2.0414 -5.2366 -1.9177 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 3.3960 3.3356 -0.2413 31 1 0.7584 -2.5306 0.8881 32 1 0.7590 -2.5294 -0.8919 33 1 2.9525 -3.6236 -0.9287 34 1 3.0576 -3.5334 0.8459 35 1 3.3238 -5.9785 -0.8177 36 1 3.0009 -6.4294 0.9186 37 1 1.9628 -7.6672 -2.3050 38 1 0.8666 -8.6976 -1.3253 39 1 -1.0740 -7.4485 -1.9449 40 1 -0.1047 -7.0511 -3.3957 41 1 -0.8920 -5.2729 -1.1523 42 1 -0.1428 -4.8287 -2.7167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357002021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = 46.206800 kcal Electronic energy + Delta-G solvation = -20461.487196 eV Core-core repulsion = 17444.505856 eV Total energy + Delta-G solvation = -3016.981340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01531 -39.00906 -35.39629 -34.86943 -32.91955 -31.97747 -29.09568 -27.68922 -26.50716 -25.33837 -24.25324 -23.10468 -21.88607 -20.76044 -19.68357 -18.50095 -16.93891 -16.43792 -15.83827 -15.38678 -15.22026 -14.91075 -14.80972 -14.56817 -13.97125 -13.69632 -13.56949 -12.66922 -12.53693 -12.24011 -12.20051 -12.11057 -11.88275 -11.53055 -11.42656 -11.35096 -11.15558 -10.97212 -10.87124 -10.77657 -10.63162 -10.54593 -10.10448 -9.47962 -9.24365 -9.11596 -8.95675 -8.37632 -7.61304 -6.37929 -4.09664 3.18839 3.37777 3.43297 3.49234 3.64405 3.83436 4.16580 4.46245 4.54241 4.56561 4.68765 4.91328 4.96596 5.03852 5.15823 5.19846 5.25368 5.36544 5.39280 5.43177 5.52528 5.56666 5.59571 5.66716 5.74221 5.76604 5.81766 5.86448 5.96932 5.99819 6.06451 6.16470 6.17340 6.34857 6.81501 6.90059 7.13246 7.41095 8.05031 8.30100 8.44795 8.78740 9.02666 9.60263 10.99469 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038821 B = 0.003604 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.090954 B = 7766.534567 C = 8071.877851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.235 3.765 4 C -0.606 4.606 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.127 4.127 15 C 0.021 3.979 16 N -0.432 5.432 17 C 0.011 3.989 18 C -0.135 4.135 19 H 0.115 0.885 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.020 4.020 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.922 -21.228 -5.185 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.115 3.885 4 C -0.645 4.645 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.547 5.547 8 Si 0.903 3.097 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.168 4.168 15 C -0.107 4.107 16 N -0.154 5.154 17 C -0.116 4.116 18 C -0.154 4.154 19 H 0.133 0.867 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.130 4.130 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.077 -19.825 -3.670 21.719 hybrid contribution -0.309 -0.875 -1.589 1.840 sum -8.386 -20.700 -5.259 22.945 Atomic orbital electron populations 1.21636 0.81217 1.02764 1.00334 1.47962 1.06198 1.07488 1.71524 1.19336 0.91961 0.79084 0.98139 1.22287 1.40691 1.09522 0.91960 0.93017 1.25835 0.93270 0.93344 1.06094 1.70775 1.44005 1.39785 1.00109 0.83459 0.76830 0.75617 0.73788 1.21418 1.21494 1.20845 1.20354 0.88072 0.85197 0.77241 1.90653 1.14038 1.87370 1.50347 1.21478 0.99083 0.92424 1.03808 1.22541 0.95915 0.89694 1.02557 1.70530 1.21257 1.00845 1.22783 1.23775 0.93922 0.92056 1.01874 1.23572 0.99334 0.94287 0.98184 0.86657 1.22325 0.98045 0.98122 0.96013 1.23304 0.98086 0.94048 1.00102 1.21523 0.96399 0.96363 0.99677 1.23918 0.98793 0.97859 0.92450 0.91103 0.93835 0.92145 0.90828 0.96149 0.94911 0.92234 0.88816 0.90044 0.93190 0.89620 0.90271 0.89527 0.91366 0.91450 0.91407 0.91561 0.90989 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.24 59.84 0.61 2.02 16 2 N -0.60 -13.34 2.86 -182.95 -0.52 -13.86 16 3 C 0.23 6.32 4.47 -5.19 -0.02 6.30 16 4 C -0.61 -17.88 9.39 -34.44 -0.32 -18.20 16 5 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 7 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 8 Si 1.08 26.16 29.90 -169.99 -5.08 21.08 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.50 10.98 7.67 -10.99 -0.08 10.89 16 13 O -0.55 -14.21 15.51 5.56 0.09 -14.12 16 14 C -0.13 -2.03 4.48 -27.88 -0.12 -2.16 16 15 C 0.02 0.32 4.27 -3.82 -0.02 0.31 16 16 N -0.43 -5.37 6.30 -364.56 -2.30 -7.66 16 17 C 0.01 0.11 7.51 -33.51 -0.25 -0.14 16 18 C -0.13 -1.21 4.64 -92.27 -0.43 -1.64 16 19 H 0.12 1.10 8.12 -51.93 -0.42 0.68 16 20 C -0.11 -0.77 6.87 -24.18 -0.17 -0.94 16 21 C -0.12 -0.84 7.04 -22.30 -0.16 -1.00 16 22 C -0.10 -0.91 6.66 -26.52 -0.18 -1.09 16 23 C -0.02 -0.21 3.45 -98.56 -0.34 -0.55 16 24 H 0.07 0.77 6.65 -51.93 -0.35 0.43 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 27 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.02 0.55 7.94 -51.93 -0.41 0.13 16 29 H 0.03 0.98 7.28 -51.93 -0.38 0.60 16 30 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 31 H 0.09 1.42 7.40 -51.93 -0.38 1.04 16 32 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 34 H 0.09 1.45 7.97 -51.93 -0.41 1.03 16 35 H 0.08 0.76 7.30 -51.93 -0.38 0.38 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -34.18 334.62 -10.77 -44.95 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.18 Total: -2.13 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.58 Total: -5.74 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -2.06 Total: -49.08 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.18 -10.77 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357002021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.155 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds