Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00029 * 2 1 4 4 C 1.50705 * 109.46873 * 90.00381 * 3 2 1 5 5 H 1.08001 * 119.99958 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99569 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00579 * 359.72418 * 6 4 3 8 8 Si 1.86804 * 119.99541 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46977 * 269.72102 * 8 6 4 10 10 H 1.48491 * 109.47145 * 29.72599 * 8 6 4 11 11 H 1.48500 * 109.47143 * 149.72491 * 8 6 4 12 12 C 1.34779 * 120.00228 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00048 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99483 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.47016 * 180.02562 * 14 12 2 16 16 N 1.46893 * 109.47004 * 175.49021 * 15 14 12 17 17 C 1.50620 * 110.99891 * 174.49032 * 16 15 14 18 18 C 1.50040 * 82.13950 * 203.47140 * 17 16 15 19 19 H 1.09000 * 114.63731 * 290.43698 * 18 17 16 20 20 C 1.52113 * 128.13437 * 132.58284 * 18 17 16 21 21 C 1.58437 * 100.71371 * 232.99994 * 20 18 17 22 22 C 1.55690 * 105.25623 * 25.61863 * 21 20 18 23 23 C 1.42695 * 111.00443 * 86.81331 * 16 15 14 24 24 H 1.09004 * 111.44001 * 41.29643 * 23 16 15 25 25 H 1.09006 * 109.47195 * 89.99355 * 1 2 3 26 26 H 1.08999 * 109.47348 * 210.00212 * 1 2 3 27 27 H 1.09004 * 109.47039 * 329.99613 * 1 2 3 28 28 H 1.08992 * 109.47036 * 330.00218 * 3 2 1 29 29 H 1.09000 * 109.47192 * 209.99914 * 3 2 1 30 30 H 0.97003 * 119.99700 * 0.27048 * 7 6 4 31 31 H 1.09004 * 109.47341 * 299.99456 * 14 12 2 32 32 H 1.08995 * 109.47472 * 59.99924 * 14 12 2 33 33 H 1.09005 * 109.46849 * 295.48800 * 15 14 12 34 34 H 1.08998 * 109.47266 * 55.48620 * 15 14 12 35 35 H 1.09003 * 114.42605 * 316.78438 * 17 16 15 36 36 H 1.08994 * 114.43127 * 90.14852 * 17 16 15 37 37 H 1.08998 * 110.96680 * 351.21247 * 20 18 17 38 38 H 1.09005 * 110.96508 * 114.95527 * 20 18 17 39 39 H 1.09007 * 109.70517 * 266.87452 * 21 20 18 40 40 H 1.09001 * 110.70085 * 144.87959 * 21 20 18 41 41 H 1.08998 * 110.49246 * 249.97806 * 22 21 20 42 42 H 1.09002 * 110.60305 * 127.37453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0975 1.0961 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5576 3.6156 0.6733 8 14 3.4368 3.4174 3.4340 9 1 2.3096 4.2655 3.8981 10 1 3.5476 2.2206 4.3060 11 1 4.7003 4.1950 3.4979 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4722 -0.0017 15 6 2.3796 -3.6352 -0.0014 16 7 1.6482 -4.9046 0.1063 17 6 2.5826 -6.0787 -0.0247 18 6 1.3196 -6.7741 -0.4402 19 1 0.5962 -6.9200 0.3620 20 6 1.0980 -7.6804 -1.6416 21 6 -0.1581 -6.9828 -2.3091 22 6 -0.0895 -5.4949 -1.8557 23 6 1.2510 -5.3769 -1.1803 24 1 2.0414 -5.2366 -1.9177 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 3.3960 3.3356 -0.2413 31 1 0.7584 -2.5306 0.8881 32 1 0.7590 -2.5294 -0.8919 33 1 2.9525 -3.6236 -0.9287 34 1 3.0576 -3.5334 0.8459 35 1 3.3238 -5.9785 -0.8177 36 1 3.0009 -6.4294 0.9186 37 1 1.9628 -7.6672 -2.3050 38 1 0.8666 -8.6976 -1.3253 39 1 -1.0740 -7.4485 -1.9449 40 1 -0.1047 -7.0511 -3.3957 41 1 -0.8920 -5.2729 -1.1523 42 1 -0.1428 -4.8287 -2.7167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357002021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = 20.706397 kcal Electronic energy + Delta-G solvation = -20462.592976 eV Core-core repulsion = 17444.505856 eV Total energy + Delta-G solvation = -3018.087121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.84944 -40.75351 -36.91536 -36.08939 -35.02049 -33.22035 -30.09588 -29.31206 -27.75584 -26.92791 -25.16315 -24.83354 -23.17660 -21.55393 -20.50708 -20.14975 -19.08767 -18.00084 -17.23068 -16.92911 -16.15134 -15.94004 -15.85302 -15.67584 -15.40352 -15.26057 -14.75027 -14.32816 -14.03655 -13.78897 -13.63983 -13.44984 -13.12210 -12.97923 -12.86181 -12.54963 -12.48274 -12.16577 -12.01531 -12.00272 -11.81785 -11.57096 -11.35613 -11.23821 -10.79006 -10.64927 -10.39222 -10.04626 -9.53383 -8.73997 -6.50101 1.46559 1.57316 1.67695 1.75415 2.13835 2.47885 2.52313 3.05615 3.22997 3.62081 3.64449 3.79377 3.93876 3.99128 4.21501 4.24741 4.27287 4.35458 4.39890 4.49935 4.54624 4.58950 4.65240 4.68442 4.74678 4.80314 4.85420 4.86913 4.89580 4.95477 5.07312 5.17176 5.22697 5.31469 5.39581 5.48980 5.53411 5.77214 5.95234 6.08942 6.40178 6.59733 7.22376 7.34677 8.60908 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038821 B = 0.003604 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.090954 B = 7766.534567 C = 8071.877851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.608 5.608 3 C 0.245 3.755 4 C -0.620 4.620 5 H 0.044 0.956 6 C -0.032 4.032 7 N -0.930 5.930 8 Si 1.123 2.877 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.494 3.506 13 O -0.600 6.600 14 C -0.107 4.107 15 C 0.029 3.971 16 N -0.440 5.440 17 C 0.008 3.992 18 C -0.118 4.118 19 H 0.114 0.886 20 C -0.103 4.103 21 C -0.112 4.112 22 C -0.102 4.102 23 C -0.032 4.032 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.020 0.980 29 H -0.008 1.008 30 H 0.255 0.745 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 -23.028 -4.731 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.339 5.339 3 C 0.123 3.877 4 C -0.658 4.658 5 H 0.063 0.937 6 C -0.230 4.230 7 N -0.567 5.567 8 Si 0.943 3.057 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.284 3.716 13 O -0.482 6.482 14 C -0.147 4.147 15 C -0.100 4.100 16 N -0.162 5.162 17 C -0.119 4.119 18 C -0.137 4.137 19 H 0.132 0.868 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.142 4.142 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.010 0.990 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.162 -21.650 -3.238 24.134 hybrid contribution 0.307 -0.368 -1.787 1.850 sum -9.855 -22.018 -5.025 24.641 Atomic orbital electron populations 1.21944 0.77578 1.04075 1.02684 1.48059 1.08496 1.06040 1.71308 1.18890 0.90883 0.81459 0.96514 1.22567 1.40755 1.09644 0.92830 0.93746 1.27432 0.92456 0.93560 1.09567 1.70897 1.45329 1.40499 1.00007 0.82867 0.77676 0.76027 0.69089 1.18552 1.20477 1.20571 1.21417 0.87816 0.86731 0.75682 1.90620 1.16710 1.88256 1.52649 1.21383 0.98748 0.88910 1.05683 1.22376 0.95529 0.91198 1.00868 1.70616 1.21683 0.99779 1.24131 1.23866 0.94476 0.91233 1.02375 1.23505 0.98035 0.93846 0.98349 0.86823 1.22347 0.98265 0.98478 0.94977 1.23292 0.98426 0.92617 1.00709 1.21578 0.95186 0.97792 0.99450 1.24009 0.99663 0.98700 0.91814 0.91683 0.90895 0.88792 0.91574 0.96217 0.99004 0.93547 0.87191 0.87317 0.94341 0.92188 0.89945 0.89134 0.91110 0.89959 0.90343 0.90636 0.91183 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.48 10.24 127.77 1.31 3.79 16 2 N -0.61 -27.10 2.86 -851.13 -2.43 -29.53 16 3 C 0.24 13.62 4.47 85.63 0.38 14.00 16 4 C -0.62 -37.27 9.39 25.60 0.24 -37.03 16 5 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 6 C -0.03 -1.92 5.46 84.65 0.46 -1.46 16 7 N -0.93 -59.09 13.65 21.45 0.29 -58.79 16 8 Si 1.12 52.37 29.90 68.60 2.05 54.42 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.49 21.73 7.67 87.66 0.67 22.40 16 13 O -0.60 -32.64 15.51 -3.02 -0.05 -32.68 16 14 C -0.11 -3.28 4.48 29.85 0.13 -3.15 16 15 C 0.03 0.87 4.27 86.31 0.37 1.24 16 16 N -0.44 -10.37 6.30 ******* -8.23 -18.61 16 17 C 0.01 0.15 7.51 64.98 0.49 0.64 16 18 C -0.12 -1.86 4.64 -9.24 -0.04 -1.90 16 19 H 0.11 1.88 8.12 -2.39 -0.02 1.86 16 20 C -0.10 -1.18 6.87 32.25 0.22 -0.96 16 21 C -0.11 -1.26 7.04 33.47 0.24 -1.03 16 22 C -0.10 -1.57 6.66 30.73 0.20 -1.37 16 23 C -0.03 -0.62 3.45 27.15 0.09 -0.52 16 24 H 0.07 1.35 6.65 -2.38 -0.02 1.33 16 25 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.09 2.31 6.44 -2.39 -0.02 2.30 16 27 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 28 H 0.02 1.09 7.94 -2.39 -0.02 1.07 16 29 H -0.01 -0.51 7.28 -2.39 -0.02 -0.53 16 30 H 0.26 16.39 7.22 -92.71 -0.67 15.72 16 31 H 0.11 3.06 7.40 -2.38 -0.02 3.04 16 32 H 0.11 2.76 8.11 -2.39 -0.02 2.75 16 33 H 0.04 1.22 7.47 -2.38 -0.02 1.20 16 34 H 0.06 2.09 7.97 -2.39 -0.02 2.07 16 35 H 0.08 1.52 7.30 -2.39 -0.02 1.51 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.70 334.62 -2.52 -79.22 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.08 Total: 11.34 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.77 Total: -5.36 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -10.37 Total: -106.93 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.05 Total: -32.68 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -76.70 -2.52 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357002021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.929 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds