Wall clock time and date at job start Mon Mar 30 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.34777 * 119.99857 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00042 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00130 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.47116 * 179.97438 * 14 12 2 16 16 N 1.46892 * 109.46999 * 179.97438 * 15 14 12 17 17 C 1.47200 * 111.00219 * 267.23114 * 16 15 14 18 18 C 1.52857 * 88.79702 * 224.37560 * 17 16 15 19 19 H 1.08996 * 115.27052 * 138.58400 * 18 17 16 20 20 C 1.53118 * 115.97364 * 276.07138 * 18 17 16 21 21 C 1.53732 * 107.24922 * 93.70935 * 20 18 17 22 22 C 1.55572 * 106.37170 * 16.94695 * 21 20 18 23 23 C 1.47828 * 110.99891 * 170.00093 * 16 15 14 24 24 H 1.09003 * 115.94770 * 16.81112 * 23 16 15 25 25 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 26 26 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 27 27 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 28 28 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 29 29 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47151 * 299.99768 * 14 12 2 32 32 H 1.08993 * 109.47232 * 59.99939 * 14 12 2 33 33 H 1.08999 * 109.47153 * 300.00435 * 15 14 12 34 34 H 1.09002 * 109.46712 * 60.00084 * 15 14 12 35 35 H 1.09000 * 113.33620 * 339.36493 * 17 16 15 36 36 H 1.09004 * 113.33389 * 109.38926 * 17 16 15 37 37 H 1.08997 * 109.88644 * 213.12010 * 20 18 17 38 38 H 1.09004 * 109.89070 * 334.29478 * 20 18 17 39 39 H 1.08996 * 110.17808 * 136.71745 * 21 20 18 40 40 H 1.08997 * 110.17285 * 258.46081 * 21 20 18 41 41 H 1.09000 * 112.08134 * 212.42109 * 22 21 20 42 42 H 1.09000 * 109.39860 * 89.57352 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 2.8607 2.4165 4.3673 10 1 4.9014 3.5241 3.6670 11 1 2.8017 4.7373 3.6676 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0005 16 7 1.6451 -4.9074 0.0011 17 6 1.4393 -5.3971 1.3740 18 6 1.8418 -6.7940 0.9016 19 1 2.4879 -7.3473 1.5831 20 6 0.7304 -7.6327 0.2646 21 6 0.8046 -7.4095 -1.2546 22 6 2.2066 -6.7985 -1.5400 23 6 2.5572 -6.0458 -0.2385 24 1 3.6189 -5.8446 -0.0954 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6084 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5137 30 1 4.0310 4.4434 0.8504 31 1 0.7583 -2.5299 0.8903 32 1 0.7590 -2.5303 -0.8896 33 1 3.0063 -3.5775 -0.8894 34 1 3.0062 -3.5775 0.8905 35 1 2.1353 -4.9676 2.0945 36 1 0.4021 -5.3350 1.7036 37 1 0.8849 -8.6873 0.4924 38 1 -0.2403 -7.3085 0.6400 39 1 0.6874 -8.3573 -1.7800 40 1 0.0326 -6.7075 -1.5695 41 1 2.1890 -6.1093 -2.3843 42 1 2.9218 -7.6014 -1.7188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357002024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:04 Heat of formation + Delta-G solvation = -33.597958 kcal Electronic energy + Delta-G solvation = -20416.930323 eV Core-core repulsion = 17396.488388 eV Total energy + Delta-G solvation = -3020.441934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88773 -40.57136 -36.67534 -35.68306 -34.75003 -32.70716 -30.47327 -29.65727 -27.74403 -27.13859 -25.57493 -24.84380 -22.95306 -21.15550 -19.98757 -19.41545 -18.73224 -18.09516 -17.20925 -17.10701 -16.83888 -16.24170 -16.19087 -15.46703 -15.08648 -14.69169 -14.39455 -14.12494 -13.93253 -13.64097 -13.55050 -13.45799 -13.19675 -12.97768 -12.82208 -12.58325 -12.31425 -12.23365 -12.11503 -11.98253 -11.70754 -11.67742 -11.54186 -11.20929 -11.13491 -10.67500 -10.62209 -9.81086 -9.44081 -8.24898 -6.40298 1.34603 1.36994 1.49049 1.81537 2.27484 2.41167 2.99230 3.04491 3.29275 3.69234 3.80063 3.91135 4.03651 4.22309 4.24668 4.34510 4.39740 4.44401 4.55012 4.61594 4.69078 4.71852 4.79715 4.80410 4.91217 4.94029 4.97041 5.01488 5.08654 5.13657 5.17730 5.20699 5.28406 5.39378 5.47468 5.53963 5.62220 5.82046 6.03477 6.11687 6.67012 6.76850 7.25465 7.45836 8.82524 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.003633 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.498104 B = 7704.546297 C = 7910.497080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.107 4.107 15 C 0.048 3.952 16 N -0.467 5.467 17 C 0.003 3.997 18 C -0.113 4.113 19 H 0.098 0.902 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.105 4.105 23 C 0.010 3.990 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.023 0.977 29 H -0.004 1.004 30 H 0.268 0.732 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -22.618 -0.730 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.147 4.147 15 C -0.082 4.082 16 N -0.190 5.190 17 C -0.126 4.126 18 C -0.132 4.132 19 H 0.116 0.884 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.099 4.099 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.337 -22.283 -1.235 24.192 hybrid contribution 1.436 1.136 1.124 2.148 sum -7.901 -21.147 -0.112 22.575 Atomic orbital electron populations 1.21929 0.77779 1.03984 1.02600 1.48212 1.08497 1.06419 1.71127 1.18762 0.91051 0.80480 0.96091 1.21736 1.36797 1.06703 0.92990 0.92878 1.25907 0.94860 0.96369 1.02205 1.70062 1.38926 1.14823 1.33075 0.85324 0.77913 0.78444 0.78853 1.19089 1.20681 1.19241 1.21426 0.87809 0.86791 0.75758 1.90622 1.16751 1.88310 1.52767 1.21397 0.98711 0.88727 1.05887 1.22187 0.94708 0.90368 1.00894 1.68512 1.32482 0.99731 1.18246 1.23749 1.02970 0.94861 0.91010 1.22980 0.98314 0.94913 0.97004 0.88374 1.21568 0.97509 0.99289 0.94805 1.22205 0.96472 1.00291 0.95821 1.22329 0.97941 0.98357 0.95671 1.24318 0.95957 0.91931 0.97712 0.90266 0.91141 0.88820 0.91540 0.95862 0.98575 0.92341 0.87514 0.86704 0.92176 0.94867 0.91870 0.88718 0.90398 0.91171 0.90748 0.92433 0.92154 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.24 127.77 1.31 3.75 16 2 N -0.61 -26.96 2.86 -851.13 -2.43 -29.39 16 3 C 0.26 14.40 5.16 85.63 0.44 14.84 16 4 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.32 5.46 84.66 0.46 0.78 16 7 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.49 21.33 7.67 87.66 0.67 22.00 16 13 O -0.60 -32.40 15.56 -3.04 -0.05 -32.45 16 14 C -0.11 -3.18 4.58 29.85 0.14 -3.05 16 15 C 0.05 1.40 4.12 86.31 0.36 1.76 16 16 N -0.47 -10.74 5.69 -877.60 -4.99 -15.73 16 17 C 0.00 0.06 7.36 85.06 0.63 0.68 16 18 C -0.11 -1.83 4.97 -10.47 -0.05 -1.88 16 19 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 20 C -0.09 -1.27 6.43 30.88 0.20 -1.07 16 21 C -0.11 -1.63 6.56 31.73 0.21 -1.42 16 22 C -0.11 -1.82 6.79 31.95 0.22 -1.60 16 23 C 0.01 0.20 4.27 44.40 0.19 0.39 16 24 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.22 6.44 -2.39 -0.02 2.20 16 27 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 28 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.11 2.74 7.40 -2.38 -0.02 2.72 16 32 H 0.11 2.91 8.11 -2.39 -0.02 2.89 16 33 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.03 1.09 7.25 -2.39 -0.02 1.07 16 35 H 0.06 1.33 7.38 -2.39 -0.02 1.31 16 36 H 0.09 1.64 8.03 -2.38 -0.02 1.62 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.94 7.95 -2.39 -0.02 0.92 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.15 336.50 0.82 -73.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.97 Total: 10.35 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.00 Total: 3.25 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -7.14 Total: -102.09 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.15 0.82 -73.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357002024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.731 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds