Wall clock time and date at job start Mon Mar 30 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00141 * 2 1 4 4 O 1.21283 * 119.99653 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00126 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47377 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47440 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99594 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00148 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99897 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00027 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47093 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46848 * 120.00088 * 11 9 7 14 14 H 1.48498 * 109.47112 * 239.99851 * 11 9 7 15 15 C 1.46503 * 119.99581 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.62477 * 176.89393 * 15 2 1 17 17 C 1.55136 * 110.70726 * 53.60151 * 15 2 1 18 18 C 1.54908 * 101.65381 * 205.95989 * 17 15 2 19 19 N 1.47848 * 104.79298 * 37.07081 * 18 17 15 20 20 C 1.46901 * 110.99582 * 213.63475 * 19 18 17 21 21 C 1.53003 * 117.49776 * 246.83809 * 20 19 18 22 22 C 1.53005 * 117.49637 * 178.18330 * 20 19 18 23 23 C 1.47440 * 108.56832 * 335.90186 * 19 18 17 24 24 H 1.09000 * 109.47330 * 270.00673 * 1 2 3 25 25 H 1.09001 * 109.46498 * 30.00346 * 1 2 3 26 26 H 1.08997 * 109.47226 * 150.00415 * 1 2 3 27 27 H 1.09007 * 109.47373 * 300.00520 * 5 3 2 28 28 H 1.08997 * 109.47292 * 60.00067 * 5 3 2 29 29 H 1.08997 * 109.46778 * 299.99709 * 6 5 3 30 30 H 1.08997 * 109.47359 * 59.99491 * 6 5 3 31 31 H 0.97002 * 119.99573 * 180.02562 * 10 9 7 32 32 H 1.09004 * 110.99115 * 87.86711 * 17 15 2 33 33 H 1.09001 * 110.99256 * 324.05154 * 17 15 2 34 34 H 1.08996 * 110.37289 * 278.24240 * 18 17 15 35 35 H 1.09001 * 110.37508 * 155.89681 * 18 17 15 36 36 H 1.08998 * 115.55293 * 32.50922 * 20 19 18 37 37 H 1.09001 * 117.49646 * 0.02562 * 21 20 19 38 38 H 1.08995 * 117.49747 * 145.02550 * 21 20 19 39 39 H 1.09003 * 117.49220 * 214.98264 * 22 20 19 40 40 H 1.09000 * 117.49520 * 359.97438 * 22 20 19 41 41 H 1.08998 * 109.88732 * 120.39452 * 23 19 18 42 42 H 1.09000 * 109.89045 * 241.42200 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3798 3.6351 -0.0011 7 6 1.6263 4.9403 -0.0023 8 1 0.5463 4.9403 -0.0031 9 6 2.3157 6.1343 -0.0024 10 7 3.6309 6.1342 -0.0020 11 14 1.3818 7.7521 -0.0047 12 1 -0.0782 7.4808 -0.0055 13 1 1.7392 8.5316 1.2077 14 1 1.7419 8.5299 -1.2173 15 6 2.1974 -1.2688 0.0006 16 1 3.2716 -1.0921 -0.0548 17 6 1.7259 -2.1749 -1.1671 18 6 2.0536 -3.5865 -0.6197 19 7 1.7522 -3.5103 0.8257 20 6 2.6705 -4.3558 1.6002 21 6 2.0791 -5.5755 2.3098 22 6 2.5176 -4.3547 3.1226 23 6 1.8452 -2.1017 1.2511 24 1 -0.3634 0.0001 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7585 2.5302 0.8891 29 1 3.0063 3.5778 0.8889 30 1 3.0065 3.5770 -0.8910 31 1 4.1159 6.9743 -0.0017 32 1 2.2916 -1.9673 -2.0754 33 1 0.6558 -2.0623 -1.3411 34 1 3.1070 -3.8190 -0.7759 35 1 1.4236 -4.3354 -1.0997 36 1 3.6784 -4.4486 1.1956 37 1 1.0087 -5.7507 2.2017 38 1 2.6980 -6.4705 2.3725 39 1 3.4250 -4.4471 3.7195 40 1 1.7359 -3.7263 3.5494 41 1 0.8888 -1.7733 1.6579 42 1 2.6255 -1.9924 2.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360380057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:57 Heat of formation + Delta-G solvation = -5.728394 kcal Electronic energy + Delta-G solvation = -20328.541913 eV Core-core repulsion = 17309.308493 eV Total energy + Delta-G solvation = -3019.233419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14913 -38.72707 -36.43876 -34.40208 -33.47064 -31.10530 -29.73068 -28.79821 -26.66393 -25.58163 -22.87561 -22.52176 -21.83848 -20.82864 -20.03174 -18.56699 -17.17493 -16.88661 -16.27617 -15.45032 -15.42036 -15.18621 -14.53451 -14.31843 -13.79161 -13.50204 -13.17668 -12.95831 -12.72685 -12.38334 -12.24111 -12.11321 -12.05991 -11.76927 -11.66280 -11.50335 -11.10524 -10.94353 -10.82185 -10.62166 -10.56795 -10.34433 -9.95248 -9.62493 -9.16579 -8.99022 -8.69121 -8.34029 -8.28318 -5.95935 -4.00241 3.16004 3.19182 3.32656 3.39804 3.43120 3.53948 3.66395 4.46335 4.50157 4.56034 4.68667 4.72924 4.88311 5.01769 5.08353 5.18978 5.24658 5.34016 5.39111 5.42036 5.46993 5.51359 5.56911 5.65121 5.71421 5.80922 5.86461 5.91847 5.93726 6.08476 6.22558 6.24171 6.63733 6.78435 6.87645 6.90917 7.72497 7.75180 7.86515 8.07430 8.38714 8.72687 9.08417 9.63348 11.15092 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040857 B = 0.003331 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.160493 B = 8404.687308 C = 8527.413765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.619 5.619 3 C 0.512 3.488 4 O -0.535 6.535 5 C -0.127 4.127 6 C 0.036 3.964 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.121 3.879 16 H 0.105 0.895 17 C -0.143 4.143 18 C 0.048 3.952 19 N -0.500 5.500 20 C -0.002 4.002 21 C -0.163 4.163 22 C -0.175 4.175 23 C 0.034 3.966 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -22.422 1.445 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.354 5.354 3 C 0.303 3.697 4 O -0.410 6.410 5 C -0.167 4.167 6 C -0.001 4.001 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.529 5.529 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.016 3.984 16 H 0.123 0.877 17 C -0.181 4.181 18 C -0.080 4.080 19 N -0.224 5.224 20 C -0.111 4.111 21 C -0.200 4.200 22 C -0.213 4.213 23 C -0.095 4.095 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.022 -22.455 1.541 23.300 hybrid contribution 0.297 1.149 -0.101 1.191 sum -5.725 -21.307 1.440 22.109 Atomic orbital electron populations 1.21749 0.79806 1.03153 1.01734 1.47952 1.06737 1.05224 1.75529 1.21648 0.88445 0.85551 0.74095 1.90652 1.14491 1.87214 1.48631 1.21885 1.00673 0.91771 1.02337 1.18914 0.93200 0.89440 0.98570 1.21255 0.92953 0.90984 1.51206 0.92553 1.25031 0.94826 0.99247 0.95328 1.70013 1.06060 1.26455 1.50325 0.86536 0.80013 0.83838 0.77581 1.19732 1.21023 1.21021 1.22177 0.98527 0.83689 0.94045 0.87715 1.23115 1.02702 0.93889 0.98425 1.22991 0.99898 0.97428 0.87639 1.63407 1.48655 1.07121 1.03190 1.22695 0.95226 0.99920 0.93269 1.23050 1.01969 0.91862 1.03166 1.23068 1.03502 1.02013 0.92715 1.23174 1.02257 0.86689 0.97343 0.92852 0.90389 0.91259 0.90206 0.90219 0.95870 0.95881 0.93017 0.90277 0.89898 0.93169 0.89915 0.89165 0.88221 0.88916 0.88676 0.88298 0.89960 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.19 59.85 0.55 1.43 16 2 N -0.62 -9.21 2.88 -171.85 -0.49 -9.71 16 3 C 0.51 10.13 7.67 -10.99 -0.08 10.05 16 4 O -0.53 -12.81 15.35 5.56 0.09 -12.73 16 5 C -0.13 -2.61 4.19 -27.89 -0.12 -2.73 16 6 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.12 1.61 3.35 -66.11 -0.22 1.39 16 16 H 0.10 1.67 7.00 -51.93 -0.36 1.30 16 17 C -0.14 -1.50 6.60 -24.59 -0.16 -1.66 16 18 C 0.05 0.46 6.73 -2.30 -0.02 0.44 16 19 N -0.50 -5.22 5.33 -223.29 -1.19 -6.41 16 20 C 0.00 -0.02 5.09 -67.71 -0.34 -0.36 16 21 C -0.16 -1.31 10.46 -26.69 -0.28 -1.59 16 22 C -0.18 -1.52 9.52 -26.69 -0.25 -1.77 16 23 C 0.03 0.40 6.13 -2.84 -0.02 0.38 16 24 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 25 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 26 H 0.07 0.64 5.99 -51.93 -0.31 0.33 16 27 H 0.08 1.50 7.40 -51.92 -0.38 1.11 16 28 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.82 6.02 -51.93 -0.31 0.50 16 34 H 0.05 0.46 7.54 -51.93 -0.39 0.07 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 41 H 0.08 0.97 7.01 -51.93 -0.36 0.61 16 42 H 0.06 0.79 7.14 -51.93 -0.37 0.42 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -33.37 334.74 -9.29 -42.66 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.98 Total: -1.44 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.48 Total: -7.28 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.95 Total: -42.97 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.37 -9.29 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360380057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.935 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds