Wall clock time and date at job start Mon Mar 30 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00141 * 2 1 4 4 O 1.21283 * 119.99653 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00126 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47377 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47440 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99594 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00148 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99897 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00027 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47093 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46848 * 120.00088 * 11 9 7 14 14 H 1.48498 * 109.47112 * 239.99851 * 11 9 7 15 15 C 1.46503 * 119.99581 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.62477 * 176.89393 * 15 2 1 17 17 C 1.55136 * 110.70726 * 53.60151 * 15 2 1 18 18 C 1.54908 * 101.65381 * 205.95989 * 17 15 2 19 19 N 1.47848 * 104.79298 * 37.07081 * 18 17 15 20 20 C 1.46901 * 110.99582 * 213.63475 * 19 18 17 21 21 C 1.53003 * 117.49776 * 246.83809 * 20 19 18 22 22 C 1.53005 * 117.49637 * 178.18330 * 20 19 18 23 23 C 1.47440 * 108.56832 * 335.90186 * 19 18 17 24 24 H 1.09000 * 109.47330 * 270.00673 * 1 2 3 25 25 H 1.09001 * 109.46498 * 30.00346 * 1 2 3 26 26 H 1.08997 * 109.47226 * 150.00415 * 1 2 3 27 27 H 1.09007 * 109.47373 * 300.00520 * 5 3 2 28 28 H 1.08997 * 109.47292 * 60.00067 * 5 3 2 29 29 H 1.08997 * 109.46778 * 299.99709 * 6 5 3 30 30 H 1.08997 * 109.47359 * 59.99491 * 6 5 3 31 31 H 0.97002 * 119.99573 * 180.02562 * 10 9 7 32 32 H 1.09004 * 110.99115 * 87.86711 * 17 15 2 33 33 H 1.09001 * 110.99256 * 324.05154 * 17 15 2 34 34 H 1.08996 * 110.37289 * 278.24240 * 18 17 15 35 35 H 1.09001 * 110.37508 * 155.89681 * 18 17 15 36 36 H 1.08998 * 115.55293 * 32.50922 * 20 19 18 37 37 H 1.09001 * 117.49646 * 0.02562 * 21 20 19 38 38 H 1.08995 * 117.49747 * 145.02550 * 21 20 19 39 39 H 1.09003 * 117.49220 * 214.98264 * 22 20 19 40 40 H 1.09000 * 117.49520 * 359.97438 * 22 20 19 41 41 H 1.08998 * 109.88732 * 120.39452 * 23 19 18 42 42 H 1.09000 * 109.89045 * 241.42200 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3798 3.6351 -0.0011 7 6 1.6263 4.9403 -0.0023 8 1 0.5463 4.9403 -0.0031 9 6 2.3157 6.1343 -0.0024 10 7 3.6309 6.1342 -0.0020 11 14 1.3818 7.7521 -0.0047 12 1 -0.0782 7.4808 -0.0055 13 1 1.7392 8.5316 1.2077 14 1 1.7419 8.5299 -1.2173 15 6 2.1974 -1.2688 0.0006 16 1 3.2716 -1.0921 -0.0548 17 6 1.7259 -2.1749 -1.1671 18 6 2.0536 -3.5865 -0.6197 19 7 1.7522 -3.5103 0.8257 20 6 2.6705 -4.3558 1.6002 21 6 2.0791 -5.5755 2.3098 22 6 2.5176 -4.3547 3.1226 23 6 1.8452 -2.1017 1.2511 24 1 -0.3634 0.0001 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7585 2.5302 0.8891 29 1 3.0063 3.5778 0.8889 30 1 3.0065 3.5770 -0.8910 31 1 4.1159 6.9743 -0.0017 32 1 2.2916 -1.9673 -2.0754 33 1 0.6558 -2.0623 -1.3411 34 1 3.1070 -3.8190 -0.7759 35 1 1.4236 -4.3354 -1.0997 36 1 3.6784 -4.4486 1.1956 37 1 1.0087 -5.7507 2.2017 38 1 2.6980 -6.4705 2.3725 39 1 3.4250 -4.4471 3.7195 40 1 1.7359 -3.7263 3.5494 41 1 0.8888 -1.7733 1.6579 42 1 2.6255 -1.9924 2.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360380057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:57 Heat of formation + Delta-G solvation = -28.197270 kcal Electronic energy + Delta-G solvation = -20329.516236 eV Core-core repulsion = 17309.308493 eV Total energy + Delta-G solvation = -3020.207743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34287 -39.88955 -37.43743 -35.64229 -35.47937 -33.02789 -30.69428 -29.85129 -27.93250 -27.35068 -24.22803 -23.21472 -23.14300 -21.86047 -21.10977 -19.91808 -18.89990 -17.93812 -17.74163 -16.84894 -16.73324 -16.48362 -16.10532 -15.41371 -14.89125 -14.74255 -14.36452 -14.31061 -14.07589 -13.70583 -13.55656 -13.34440 -13.15140 -13.01475 -12.85536 -12.60317 -12.50454 -12.39930 -12.32913 -11.93631 -11.75234 -11.59399 -11.32548 -11.28946 -11.07528 -10.69664 -10.58468 -9.75766 -9.30555 -8.18665 -6.32885 1.42089 1.43653 1.57029 1.63388 1.96396 2.42760 2.75336 2.92565 3.14453 3.55179 3.62013 3.83018 3.97591 3.99510 4.08970 4.20939 4.26160 4.31194 4.38472 4.46055 4.50636 4.54063 4.69973 4.76189 4.79007 4.81952 4.88203 4.97856 5.01373 5.07087 5.09471 5.15514 5.29746 5.47733 5.60676 5.61632 5.81836 5.84448 6.08129 6.16556 6.36610 6.85739 7.22715 7.37608 8.94384 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040857 B = 0.003331 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.160493 B = 8404.687308 C = 8527.413765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.509 3.491 4 O -0.592 6.592 5 C -0.114 4.114 6 C 0.042 3.958 7 C -0.541 4.541 8 H 0.077 0.923 9 C -0.008 4.008 10 N -0.939 5.939 11 Si 0.975 3.025 12 H -0.251 1.251 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.113 3.887 16 H 0.070 0.930 17 C -0.132 4.132 18 C 0.051 3.949 19 N -0.497 5.497 20 C -0.021 4.021 21 C -0.146 4.146 22 C -0.179 4.179 23 C 0.044 3.956 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.103 0.897 29 H -0.020 1.020 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -23.538 1.350 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.299 3.701 4 O -0.472 6.472 5 C -0.153 4.153 6 C 0.005 3.995 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.799 3.201 12 H -0.174 1.174 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.008 3.992 16 H 0.088 0.912 17 C -0.171 4.171 18 C -0.076 4.076 19 N -0.221 5.221 20 C -0.130 4.130 21 C -0.183 4.183 22 C -0.217 4.217 23 C -0.084 4.084 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.121 0.879 29 H -0.002 1.002 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.208 -23.631 1.446 25.403 hybrid contribution 1.289 1.402 -0.059 1.905 sum -7.919 -22.229 1.387 23.639 Atomic orbital electron populations 1.22090 0.76867 1.04895 1.03361 1.47885 1.08443 1.04253 1.73196 1.21476 0.87666 0.86816 0.74131 1.90633 1.16804 1.88068 1.51737 1.21639 0.99219 0.89865 1.04592 1.18697 0.93698 0.92601 0.94521 1.21736 0.94029 0.91481 1.50613 0.90462 1.26164 0.95733 1.04038 0.94637 1.70195 1.08373 1.27745 1.51582 0.85253 0.79363 0.77971 0.77531 1.17440 1.20670 1.20629 1.22276 0.96734 0.83496 0.96679 0.91173 1.23080 1.03459 0.93558 0.96996 1.23046 1.00409 0.97079 0.87116 1.63504 1.48924 1.05957 1.03760 1.22809 0.95357 1.01076 0.93732 1.23095 1.02187 0.91787 1.01258 1.23107 1.03748 1.02556 0.92271 1.23031 1.01867 0.87528 0.96019 0.91236 0.89732 0.88523 0.87675 0.87907 1.00182 1.00110 0.92873 0.90504 0.88266 0.93225 0.87917 0.89297 0.88153 0.87269 0.87951 0.88957 0.89399 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 9.19 127.77 1.17 2.50 16 2 N -0.61 -17.52 2.88 -816.01 -2.35 -19.87 16 3 C 0.51 20.59 7.67 87.66 0.67 21.27 16 4 O -0.59 -30.26 15.35 -3.04 -0.05 -30.31 16 5 C -0.11 -4.67 4.19 29.85 0.13 -4.54 16 6 C 0.04 2.41 4.26 29.85 0.13 2.54 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 10 N -0.94 -60.19 13.29 21.45 0.28 -59.91 16 11 Si 0.98 44.49 29.54 68.60 2.03 46.51 16 12 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.11 3.00 3.35 46.17 0.15 3.16 16 16 H 0.07 2.37 7.00 -2.39 -0.02 2.35 16 17 C -0.13 -2.56 6.60 31.98 0.21 -2.35 16 18 C 0.05 0.86 6.73 86.77 0.58 1.45 16 19 N -0.50 -9.53 5.33 -860.35 -4.59 -14.12 16 20 C -0.02 -0.37 5.09 44.92 0.23 -0.14 16 21 C -0.15 -2.02 10.46 30.62 0.32 -1.70 16 22 C -0.18 -2.89 9.52 30.62 0.29 -2.60 16 23 C 0.04 1.01 6.13 86.65 0.53 1.54 16 24 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 25 H 0.08 1.57 6.44 -2.39 -0.02 1.55 16 26 H 0.10 1.38 5.99 -2.39 -0.01 1.37 16 27 H 0.11 3.77 7.40 -2.38 -0.02 3.75 16 28 H 0.10 3.73 8.11 -2.39 -0.02 3.71 16 29 H -0.02 -1.31 8.10 -2.39 -0.02 -1.32 16 30 H -0.02 -1.26 8.10 -2.39 -0.02 -1.27 16 31 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.10 1.61 6.02 -2.39 -0.01 1.60 16 34 H 0.05 0.86 7.54 -2.39 -0.02 0.84 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.59 7.71 -2.39 -0.02 1.57 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 41 H 0.09 1.91 7.01 -2.39 -0.02 1.89 16 42 H 0.05 1.23 7.14 -2.39 -0.02 1.21 16 Total: -1.00 -76.53 334.74 1.43 -75.10 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.99 Total: 12.28 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.12 Total: -9.69 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -6.65 Total: -93.89 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.53 1.43 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360380057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.899 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds