Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99515 * 2 1 4 4 O 1.21288 * 119.99426 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00479 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47247 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.46930 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99728 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00256 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99821 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47339 * 59.99866 * 11 9 7 13 13 H 1.48502 * 109.47262 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47139 * 299.99734 * 11 9 7 15 15 C 1.46497 * 120.00408 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.27541 * 182.09551 * 15 2 1 17 17 C 1.54599 * 110.39272 * 304.23446 * 15 2 1 18 18 C 1.54931 * 102.92064 * 140.91163 * 17 15 2 19 19 N 1.48527 * 103.23058 * 322.58870 * 18 17 15 20 20 C 1.46905 * 111.00057 * 159.71645 * 19 18 17 21 21 C 1.52998 * 117.49882 * 105.73311 * 20 19 18 22 22 C 1.52993 * 117.50169 * 174.39400 * 20 19 18 23 23 C 1.47902 * 105.81992 * 39.20845 * 19 18 17 24 24 H 1.08994 * 109.47467 * 270.00238 * 1 2 3 25 25 H 1.08995 * 109.46909 * 30.00553 * 1 2 3 26 26 H 1.08999 * 109.46595 * 149.99757 * 1 2 3 27 27 H 1.09006 * 109.46792 * 299.99879 * 5 3 2 28 28 H 1.08993 * 109.47129 * 59.99496 * 5 3 2 29 29 H 1.08998 * 109.47320 * 299.99867 * 6 5 3 30 30 H 1.09005 * 109.47077 * 59.99665 * 6 5 3 31 31 H 0.97007 * 120.00089 * 180.02562 * 10 9 7 32 32 H 1.09000 * 110.72567 * 259.27860 * 17 15 2 33 33 H 1.09007 * 110.71965 * 22.56020 * 17 15 2 34 34 H 1.09000 * 110.67126 * 204.15082 * 18 17 15 35 35 H 1.09005 * 110.66587 * 81.02834 * 18 17 15 36 36 H 1.09003 * 115.54956 * 320.06384 * 20 19 18 37 37 H 1.08994 * 117.50136 * 215.00855 * 21 20 19 38 38 H 1.09000 * 117.49635 * 0.02562 * 21 20 19 39 39 H 1.09008 * 117.49786 * 359.97438 * 22 20 19 40 40 H 1.08996 * 117.50286 * 144.99646 * 22 20 19 41 41 H 1.08996 * 109.92195 * 94.01861 * 23 19 18 42 42 H 1.09006 * 109.91817 * 215.31744 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3795 3.6353 -0.0011 7 6 1.6259 4.9404 -0.0023 8 1 0.5459 4.9404 -0.0023 9 6 2.3153 6.1344 -0.0024 10 7 3.6304 6.1345 -0.0010 11 14 1.3812 7.7521 -0.0032 12 1 0.5271 7.8312 1.2089 13 1 2.3462 8.8809 -0.0038 14 1 0.5279 7.8304 -1.2161 15 6 2.1976 -1.2687 0.0006 16 1 3.2713 -1.0848 0.0379 17 6 1.7610 -2.1423 1.1990 18 6 1.7298 -3.5686 0.5948 19 7 1.2087 -3.3449 -0.7780 20 6 1.5477 -4.4700 -1.6596 21 6 0.4230 -5.4366 -2.0358 22 6 0.9702 -4.4564 -3.0763 23 6 1.8395 -2.0932 -1.2498 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 0.7590 2.5299 -0.8909 28 1 0.7583 2.5303 0.8890 29 1 3.0062 3.5780 0.8889 30 1 3.0062 3.5771 -0.8911 31 1 4.1154 6.9746 -0.0007 32 1 2.4903 -2.0813 2.0068 33 1 0.7708 -1.8500 1.5489 34 1 1.0569 -4.2120 1.1616 35 1 2.7328 -3.9941 0.5610 36 1 2.5462 -4.8867 -1.5272 37 1 0.6814 -6.4892 -2.1507 38 1 -0.5686 -5.2375 -1.6294 39 1 0.3383 -3.6127 -3.3541 40 1 1.5886 -4.8641 -3.8759 41 1 2.7431 -2.3226 -1.8145 42 1 1.1398 -1.5368 -1.8735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360380058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -6.395239 kcal Electronic energy + Delta-G solvation = -20344.920782 eV Core-core repulsion = 17325.658446 eV Total energy + Delta-G solvation = -3019.262336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11831 -38.66957 -36.46653 -34.34050 -33.45290 -31.09728 -29.80891 -28.74966 -26.54698 -25.53629 -22.80837 -22.60560 -21.81090 -20.82218 -20.05990 -18.50693 -17.12053 -16.90816 -16.20882 -15.54244 -15.39306 -15.10618 -14.61111 -14.39366 -13.75566 -13.45077 -13.17248 -12.71750 -12.65449 -12.26072 -12.20478 -12.09439 -12.02170 -11.79280 -11.73847 -11.57649 -11.09514 -10.89640 -10.85004 -10.66937 -10.59287 -10.33071 -9.92342 -9.60174 -9.15648 -8.96690 -8.69601 -8.39106 -8.29322 -5.94297 -3.98709 3.20860 3.25810 3.35593 3.40236 3.42085 3.50536 3.61970 4.44678 4.49097 4.57086 4.65751 4.75980 4.89623 5.07416 5.12209 5.22150 5.27965 5.32766 5.38904 5.40474 5.51181 5.56482 5.60707 5.66230 5.69834 5.78508 5.90066 5.90760 5.95916 6.03274 6.25175 6.26914 6.59474 6.80093 6.83626 6.93802 7.75656 7.77396 7.88497 8.09188 8.40475 8.76017 9.09646 9.64652 11.16658 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003329 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.096666 B = 8408.416855 C = 8528.328823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.620 5.620 3 C 0.512 3.488 4 O -0.536 6.536 5 C -0.127 4.127 6 C 0.037 3.963 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.130 3.870 16 H 0.105 0.895 17 C -0.134 4.134 18 C 0.041 3.959 19 N -0.489 5.489 20 C -0.007 4.007 21 C -0.162 4.162 22 C -0.170 4.170 23 C 0.030 3.970 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 -22.856 -1.696 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C 0.302 3.698 4 O -0.411 6.411 5 C -0.167 4.167 6 C 0.000 4.000 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.529 5.529 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.025 3.975 16 H 0.123 0.877 17 C -0.173 4.173 18 C -0.087 4.087 19 N -0.214 5.214 20 C -0.116 4.116 21 C -0.199 4.199 22 C -0.208 4.208 23 C -0.099 4.099 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.286 -22.661 -1.708 23.864 hybrid contribution 0.350 0.753 -0.037 0.831 sum -6.936 -21.908 -1.745 23.046 Atomic orbital electron populations 1.21710 0.79724 1.03261 1.01599 1.48051 1.06792 1.05213 1.75445 1.21644 0.88440 0.85596 0.74114 1.90650 1.14485 1.87252 1.48730 1.21880 1.00660 0.91829 1.02305 1.18901 0.93187 0.89404 0.98546 1.21189 0.92885 0.91031 1.51438 0.92662 1.25024 0.94821 0.99208 0.95320 1.69989 1.06065 1.26672 1.50163 0.86652 0.79546 0.83184 0.78546 1.20246 1.21299 1.20246 1.21797 0.98446 0.83698 0.93529 0.87725 1.22889 1.02943 0.93756 0.97726 1.23175 0.98660 0.97255 0.89599 1.64583 1.54116 1.01146 1.01520 1.22605 0.96454 0.96526 0.96033 1.23013 0.98840 0.95429 1.02645 1.23013 1.03836 1.02443 0.91495 1.23209 0.98547 0.90674 0.97455 0.93057 0.90637 0.90878 0.90243 0.90263 0.95888 0.95895 0.92907 0.90482 0.89956 0.89799 0.93485 0.89479 0.88904 0.88169 0.88260 0.88755 0.92971 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 8.84 59.85 0.53 1.46 16 2 N -0.62 -9.32 2.77 -172.38 -0.48 -9.80 16 3 C 0.51 10.17 7.67 -10.98 -0.08 10.09 16 4 O -0.54 -12.85 15.34 5.55 0.09 -12.77 16 5 C -0.13 -2.64 4.19 -27.89 -0.12 -2.75 16 6 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.13 1.74 3.39 -66.57 -0.23 1.51 16 16 H 0.10 1.64 6.96 -51.93 -0.36 1.28 16 17 C -0.13 -1.44 6.65 -24.87 -0.17 -1.61 16 18 C 0.04 0.38 6.56 -1.90 -0.01 0.37 16 19 N -0.49 -4.95 5.42 -222.51 -1.21 -6.15 16 20 C -0.01 -0.06 4.87 -67.71 -0.33 -0.39 16 21 C -0.16 -1.23 10.46 -26.70 -0.28 -1.50 16 22 C -0.17 -1.38 10.19 -26.70 -0.27 -1.65 16 23 C 0.03 0.34 5.64 -2.76 -0.02 0.33 16 24 H 0.05 0.55 7.88 -51.93 -0.41 0.14 16 25 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 26 H 0.07 0.75 6.97 -51.93 -0.36 0.39 16 27 H 0.08 1.51 7.40 -51.93 -0.38 1.13 16 28 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.87 6.85 -51.92 -0.36 0.52 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.42 7.90 -51.93 -0.41 0.01 16 36 H 0.09 0.75 7.97 -51.93 -0.41 0.34 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.62 7.77 -51.93 -0.40 0.21 16 42 H 0.09 1.05 7.10 -51.93 -0.37 0.68 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -33.25 337.44 -9.44 -42.69 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.14 Total: -1.84 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.50 Total: -7.06 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.95 Total: -42.89 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.25 -9.44 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360380058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.299 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds