Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99515 * 2 1 4 4 O 1.21288 * 119.99426 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00479 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47247 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.46930 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99728 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00256 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99821 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47339 * 59.99866 * 11 9 7 13 13 H 1.48502 * 109.47262 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47139 * 299.99734 * 11 9 7 15 15 C 1.46497 * 120.00408 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.27541 * 182.09551 * 15 2 1 17 17 C 1.54599 * 110.39272 * 304.23446 * 15 2 1 18 18 C 1.54931 * 102.92064 * 140.91163 * 17 15 2 19 19 N 1.48527 * 103.23058 * 322.58870 * 18 17 15 20 20 C 1.46905 * 111.00057 * 159.71645 * 19 18 17 21 21 C 1.52998 * 117.49882 * 105.73311 * 20 19 18 22 22 C 1.52993 * 117.50169 * 174.39400 * 20 19 18 23 23 C 1.47902 * 105.81992 * 39.20845 * 19 18 17 24 24 H 1.08994 * 109.47467 * 270.00238 * 1 2 3 25 25 H 1.08995 * 109.46909 * 30.00553 * 1 2 3 26 26 H 1.08999 * 109.46595 * 149.99757 * 1 2 3 27 27 H 1.09006 * 109.46792 * 299.99879 * 5 3 2 28 28 H 1.08993 * 109.47129 * 59.99496 * 5 3 2 29 29 H 1.08998 * 109.47320 * 299.99867 * 6 5 3 30 30 H 1.09005 * 109.47077 * 59.99665 * 6 5 3 31 31 H 0.97007 * 120.00089 * 180.02562 * 10 9 7 32 32 H 1.09000 * 110.72567 * 259.27860 * 17 15 2 33 33 H 1.09007 * 110.71965 * 22.56020 * 17 15 2 34 34 H 1.09000 * 110.67126 * 204.15082 * 18 17 15 35 35 H 1.09005 * 110.66587 * 81.02834 * 18 17 15 36 36 H 1.09003 * 115.54956 * 320.06384 * 20 19 18 37 37 H 1.08994 * 117.50136 * 215.00855 * 21 20 19 38 38 H 1.09000 * 117.49635 * 0.02562 * 21 20 19 39 39 H 1.09008 * 117.49786 * 359.97438 * 22 20 19 40 40 H 1.08996 * 117.50286 * 144.99646 * 22 20 19 41 41 H 1.08996 * 109.92195 * 94.01861 * 23 19 18 42 42 H 1.09006 * 109.91817 * 215.31744 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3795 3.6353 -0.0011 7 6 1.6259 4.9404 -0.0023 8 1 0.5459 4.9404 -0.0023 9 6 2.3153 6.1344 -0.0024 10 7 3.6304 6.1345 -0.0010 11 14 1.3812 7.7521 -0.0032 12 1 0.5271 7.8312 1.2089 13 1 2.3462 8.8809 -0.0038 14 1 0.5279 7.8304 -1.2161 15 6 2.1976 -1.2687 0.0006 16 1 3.2713 -1.0848 0.0379 17 6 1.7610 -2.1423 1.1990 18 6 1.7298 -3.5686 0.5948 19 7 1.2087 -3.3449 -0.7780 20 6 1.5477 -4.4700 -1.6596 21 6 0.4230 -5.4366 -2.0358 22 6 0.9702 -4.4564 -3.0763 23 6 1.8395 -2.0932 -1.2498 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 0.7590 2.5299 -0.8909 28 1 0.7583 2.5303 0.8890 29 1 3.0062 3.5780 0.8889 30 1 3.0062 3.5771 -0.8911 31 1 4.1154 6.9746 -0.0007 32 1 2.4903 -2.0813 2.0068 33 1 0.7708 -1.8500 1.5489 34 1 1.0569 -4.2120 1.1616 35 1 2.7328 -3.9941 0.5610 36 1 2.5462 -4.8867 -1.5272 37 1 0.6814 -6.4892 -2.1507 38 1 -0.5686 -5.2375 -1.6294 39 1 0.3383 -3.6127 -3.3541 40 1 1.5886 -4.8641 -3.8759 41 1 2.7431 -2.3226 -1.8145 42 1 1.1398 -1.5368 -1.8735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360380058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -28.595888 kcal Electronic energy + Delta-G solvation = -20345.883475 eV Core-core repulsion = 17325.658446 eV Total energy + Delta-G solvation = -3020.225028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32555 -39.81434 -37.43247 -35.62352 -35.44352 -33.01946 -30.77854 -29.79920 -27.89971 -27.27383 -24.16085 -23.25860 -23.11062 -21.70960 -21.23145 -19.86868 -18.87733 -17.90030 -17.71074 -16.82146 -16.72027 -16.48218 -16.13958 -15.48301 -14.83704 -14.75932 -14.37272 -14.26459 -13.92254 -13.60251 -13.48991 -13.32430 -13.01195 -12.94550 -12.83634 -12.71414 -12.53562 -12.46451 -12.33675 -11.91197 -11.80130 -11.58121 -11.32423 -11.31737 -11.01019 -10.66656 -10.55998 -9.64072 -9.49778 -8.17818 -6.32253 1.42164 1.46988 1.54643 1.65383 2.01173 2.43514 2.76934 2.90992 3.14959 3.51569 3.68790 3.88420 3.99829 4.03661 4.10468 4.24801 4.31815 4.35750 4.37793 4.47544 4.52026 4.57294 4.73544 4.75730 4.81490 4.82453 4.89965 4.93879 5.02548 5.07700 5.10575 5.14641 5.32208 5.48048 5.61985 5.65162 5.73620 5.84809 6.07890 6.17304 6.39097 6.85961 7.24619 7.38124 8.94803 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003329 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.096666 B = 8408.416855 C = 8528.328823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.509 3.491 4 O -0.592 6.592 5 C -0.114 4.114 6 C 0.044 3.956 7 C -0.544 4.544 8 H 0.077 0.923 9 C -0.007 4.007 10 N -0.939 5.939 11 Si 0.975 3.025 12 H -0.262 1.262 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.123 3.877 16 H 0.073 0.927 17 C -0.127 4.127 18 C 0.046 3.954 19 N -0.488 5.488 20 C -0.023 4.023 21 C -0.147 4.147 22 C -0.173 4.173 23 C 0.040 3.960 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.102 0.898 29 H -0.020 1.020 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 -23.968 -1.632 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.299 3.701 4 O -0.472 6.472 5 C -0.154 4.154 6 C 0.006 3.994 7 C -0.581 4.581 8 H 0.095 0.905 9 C -0.205 4.205 10 N -0.579 5.579 11 Si 0.798 3.202 12 H -0.186 1.186 13 H -0.214 1.214 14 H -0.186 1.186 15 C 0.018 3.982 16 H 0.091 0.909 17 C -0.165 4.165 18 C -0.081 4.081 19 N -0.212 5.212 20 C -0.132 4.132 21 C -0.184 4.184 22 C -0.210 4.210 23 C -0.089 4.089 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.121 0.879 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.421 -23.832 -1.643 26.063 hybrid contribution 1.314 1.000 -0.068 1.653 sum -9.107 -22.832 -1.711 24.641 Atomic orbital electron populations 1.21992 0.77011 1.04529 1.03220 1.47990 1.08360 1.04340 1.73141 1.21456 0.87671 0.86798 0.74166 1.90631 1.16714 1.88072 1.51768 1.21636 0.99230 0.89994 1.04494 1.18682 0.93670 0.92530 0.94527 1.21685 0.94014 0.91549 1.50901 0.90518 1.26158 0.95725 1.04010 0.94588 1.70179 1.08372 1.27885 1.51429 0.85360 0.78045 0.77223 0.79535 1.18609 1.21362 1.18615 1.21916 0.96754 0.83402 0.96097 0.90852 1.22846 1.03158 0.94021 0.96497 1.23197 0.99396 0.96364 0.89174 1.64620 1.53723 1.00846 1.02030 1.22710 0.97287 0.96749 0.96499 1.23061 0.98066 0.95998 1.01303 1.23059 1.03873 1.02586 0.91518 1.23020 0.98238 0.91352 0.96256 0.91163 0.90070 0.88984 0.87873 0.87937 1.00117 1.00131 0.92850 0.90545 0.89119 0.87945 0.93191 0.89245 0.87237 0.88301 0.89050 0.87762 0.93694 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 8.84 127.77 1.13 2.65 16 2 N -0.61 -17.82 2.77 -817.68 -2.27 -20.09 16 3 C 0.51 20.71 7.67 87.66 0.67 21.38 16 4 O -0.59 -30.19 15.34 -3.05 -0.05 -30.24 16 5 C -0.11 -4.73 4.19 29.85 0.13 -4.60 16 6 C 0.04 2.48 4.26 29.85 0.13 2.61 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 9 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 10 N -0.94 -60.33 13.29 21.45 0.28 -60.05 16 11 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 C 0.12 3.26 3.39 45.87 0.16 3.42 16 16 H 0.07 2.43 6.96 -2.39 -0.02 2.42 16 17 C -0.13 -2.53 6.65 31.80 0.21 -2.32 16 18 C 0.05 0.76 6.56 86.65 0.57 1.33 16 19 N -0.49 -8.91 5.42 -857.88 -4.65 -13.56 16 20 C -0.02 -0.37 4.87 44.91 0.22 -0.15 16 21 C -0.15 -1.84 10.46 30.62 0.32 -1.52 16 22 C -0.17 -2.48 10.19 30.62 0.31 -2.17 16 23 C 0.04 0.90 5.64 86.45 0.49 1.39 16 24 H 0.07 1.25 7.88 -2.39 -0.02 1.23 16 25 H 0.08 1.62 6.44 -2.39 -0.02 1.60 16 26 H 0.09 1.60 6.97 -2.39 -0.02 1.58 16 27 H 0.10 3.77 7.40 -2.38 -0.02 3.75 16 28 H 0.10 3.76 8.11 -2.39 -0.02 3.74 16 29 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 30 H -0.02 -1.27 8.10 -2.38 -0.02 -1.29 16 31 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.68 6.85 -2.38 -0.02 1.66 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 0.81 7.90 -2.38 -0.02 0.79 16 36 H 0.09 1.39 7.97 -2.39 -0.02 1.37 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 1.07 7.77 -2.39 -0.02 1.05 16 42 H 0.08 1.92 7.10 -2.38 -0.02 1.91 16 Total: -1.00 -75.80 337.44 1.35 -74.45 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.98 Total: 11.93 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.02 Total: -9.06 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -6.63 Total: -93.69 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.80 1.35 -74.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360380058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.852 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds