Wall clock time and date at job start Mon Mar 30 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 120.00005 * 2 1 4 4 O 1.21285 * 120.00191 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00170 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47214 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.47000 * 180.02562 * 6 5 3 8 8 H 1.08004 * 120.00606 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99716 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00019 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47103 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46695 * 119.99967 * 11 9 7 14 14 H 1.48493 * 109.47179 * 239.99931 * 11 9 7 15 15 C 1.46506 * 119.99827 * 179.97438 * 2 1 3 16 16 H 1.09007 * 109.57042 * 172.40677 * 15 2 1 17 17 C 1.53133 * 109.67807 * 52.09452 * 15 2 1 18 18 N 1.46943 * 109.34794 * 240.18452 * 17 15 2 19 19 C 1.46936 * 110.97205 * 297.91207 * 18 17 15 20 20 C 1.53131 * 109.35489 * 62.08536 * 19 18 17 21 21 C 1.53383 * 109.58163 * 292.66552 * 15 2 1 22 22 C 1.53387 * 108.59514 * 60.93523 * 21 15 2 23 23 C 1.46912 * 111.05518 * 61.95868 * 18 17 15 24 24 H 1.08997 * 109.47185 * 275.73567 * 1 2 3 25 25 H 1.08993 * 109.47001 * 35.74303 * 1 2 3 26 26 H 1.09003 * 109.47062 * 155.74073 * 1 2 3 27 27 H 1.08995 * 109.46979 * 300.00664 * 5 3 2 28 28 H 1.08998 * 109.46916 * 60.00325 * 5 3 2 29 29 H 1.08996 * 109.47239 * 300.00474 * 6 5 3 30 30 H 1.08998 * 109.46893 * 60.00336 * 6 5 3 31 31 H 0.97000 * 120.00181 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.49444 * 120.21897 * 17 15 2 33 33 H 1.09005 * 109.48722 * 0.14503 * 17 15 2 34 34 H 1.08999 * 109.49379 * 182.05492 * 19 18 17 35 35 H 1.09004 * 109.49019 * 302.12698 * 19 18 17 36 36 H 1.09000 * 109.57656 * 240.13168 * 20 19 18 37 37 H 1.08995 * 109.67739 * 119.81083 * 20 19 18 38 38 H 1.09000 * 110.11641 * 300.30112 * 21 15 2 39 39 H 1.08999 * 109.58383 * 299.15944 * 22 21 15 40 40 H 1.09006 * 109.68500 * 178.83400 * 22 21 15 41 41 H 1.08999 * 109.49017 * 57.97392 * 23 18 17 42 42 H 1.09000 * 109.48314 * 178.00933 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 6 1.6262 4.9402 0.0002 8 1 0.5461 4.9403 0.0002 9 6 2.3156 6.1344 0.0004 10 7 3.6306 6.1343 0.0009 11 14 1.3815 7.7521 0.0011 12 1 -0.0784 7.4807 0.0022 13 1 1.7407 8.5304 1.2138 14 1 1.7398 8.5311 -1.2112 15 6 2.1975 -1.2688 0.0006 16 1 3.2617 -1.0761 -0.1352 17 6 1.6881 -2.1588 -1.1367 18 7 1.1522 -3.4067 -0.5757 19 6 2.2002 -4.1604 0.1261 20 6 2.7245 -3.3281 1.2997 21 6 1.9722 -1.9918 1.3344 22 6 0.4732 -2.2781 1.4885 23 6 0.0109 -3.1399 0.3101 24 1 -0.3633 0.1027 1.0225 25 1 -0.3633 0.8340 -0.6003 26 1 -0.3633 -0.9369 -0.4222 27 1 0.7590 2.5298 -0.8907 28 1 0.7584 2.5302 0.8892 29 1 3.0056 3.5774 0.8906 30 1 3.0069 3.5774 -0.8893 31 1 4.1157 6.9743 0.0006 32 1 2.5099 -2.3883 -1.8149 33 1 0.9010 -1.6375 -1.6818 34 1 1.7861 -5.0967 0.5005 35 1 3.0179 -4.3736 -0.5624 36 1 3.7908 -3.1437 1.1692 37 1 2.5584 -3.8651 2.2336 38 1 2.3223 -1.3726 2.1603 39 1 -0.0796 -1.3387 1.4930 40 1 0.2953 -2.8110 2.4227 41 1 -0.7643 -2.6115 -0.2448 42 1 -0.3879 -4.0831 0.6833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362778039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:01 Heat of formation + Delta-G solvation = -22.581869 kcal Electronic energy + Delta-G solvation = -21260.046592 eV Core-core repulsion = 18240.082351 eV Total energy + Delta-G solvation = -3019.964241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38798 -38.82345 -35.10791 -33.50091 -32.24722 -31.50919 -31.18666 -29.81388 -26.73640 -25.70855 -23.26602 -23.12481 -22.87441 -21.14579 -18.75066 -17.58530 -17.19715 -16.86468 -16.50481 -16.18404 -15.35233 -15.12069 -14.53809 -14.32531 -13.62841 -13.34842 -13.20352 -12.82563 -12.49043 -12.44796 -12.40598 -12.16507 -12.06367 -12.00900 -11.68327 -11.60405 -11.10976 -11.02599 -10.94912 -10.58330 -10.49087 -10.32297 -9.95087 -9.61743 -9.15457 -8.99112 -8.69053 -8.32724 -8.13637 -5.95978 -4.00322 3.20335 3.25161 3.32484 3.39726 3.43006 3.78520 4.40286 4.47211 4.55616 4.72175 4.82708 4.93956 5.01211 5.03428 5.11483 5.14650 5.27310 5.35679 5.39039 5.44014 5.53819 5.61367 5.63734 5.69768 5.78016 5.85972 5.97382 5.99890 6.05695 6.11555 6.23272 6.24054 6.70496 6.84225 6.87116 6.95119 7.73196 7.75162 7.86555 8.07400 8.38829 8.74544 9.08368 9.63249 11.15055 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.003939 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.150122 B = 7106.206504 C = 7358.607697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.620 5.620 3 C 0.511 3.489 4 O -0.534 6.534 5 C -0.127 4.127 6 C 0.036 3.964 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.112 3.888 16 H 0.101 0.899 17 C 0.042 3.958 18 N -0.529 5.529 19 C 0.052 3.948 20 C -0.147 4.147 21 C -0.097 4.097 22 C -0.171 4.171 23 C 0.051 3.949 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 -21.194 1.114 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.356 5.356 3 C 0.302 3.698 4 O -0.409 6.409 5 C -0.166 4.166 6 C -0.001 4.001 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.528 5.528 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.006 3.994 16 H 0.119 0.881 17 C -0.087 4.087 18 N -0.249 5.249 19 C -0.076 4.076 20 C -0.187 4.187 21 C -0.118 4.118 22 C -0.209 4.209 23 C -0.078 4.078 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.449 -21.368 0.684 22.640 hybrid contribution -0.187 1.431 0.853 1.676 sum -7.636 -19.937 1.536 21.405 Atomic orbital electron populations 1.22045 0.80540 1.03124 1.01452 1.48078 1.06415 1.05469 1.75620 1.21622 0.88453 0.85560 0.74187 1.90651 1.14461 1.87190 1.48622 1.21875 1.00647 0.91891 1.02225 1.18908 0.93197 0.89447 0.98555 1.21255 0.92937 0.90998 1.51244 0.92581 1.25028 0.94814 0.99228 0.95311 1.70008 1.06067 1.26458 1.50301 0.86539 0.80010 0.83856 0.77590 1.19743 1.21028 1.21000 1.21723 0.98870 0.83968 0.94798 0.88129 1.22659 1.00728 0.89143 0.96185 1.62551 1.08261 1.19702 1.34396 1.22214 0.94442 0.96433 0.94545 1.22244 1.00527 0.96030 0.99878 1.21470 0.95691 0.96215 0.98375 1.22708 0.96551 1.02269 0.99413 1.22266 0.93392 0.99511 0.92593 0.92447 0.90927 0.90697 0.90269 0.90394 0.95924 0.95857 0.93013 0.89910 0.89637 0.90686 0.90540 0.91355 0.91487 0.90190 0.89480 0.91891 0.90454 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 7.61 59.85 0.46 1.24 16 2 N -0.62 -9.15 2.73 -173.62 -0.47 -9.62 16 3 C 0.51 10.12 7.67 -10.99 -0.08 10.03 16 4 O -0.53 -12.82 15.33 5.55 0.09 -12.74 16 5 C -0.13 -2.62 4.27 -27.88 -0.12 -2.74 16 6 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.11 1.48 2.69 -67.66 -0.18 1.30 16 16 H 0.10 1.61 6.95 -51.92 -0.36 1.25 16 17 C 0.04 0.47 5.52 -3.73 -0.02 0.45 16 18 N -0.53 -5.17 5.22 -234.29 -1.22 -6.39 16 19 C 0.05 0.46 6.09 -3.74 -0.02 0.43 16 20 C -0.15 -1.40 5.75 -26.46 -0.15 -1.56 16 21 C -0.10 -1.11 3.16 -90.02 -0.28 -1.40 16 22 C -0.17 -1.61 5.18 -26.46 -0.14 -1.75 16 23 C 0.05 0.43 5.61 -3.75 -0.02 0.41 16 24 H 0.06 0.59 6.48 -51.93 -0.34 0.25 16 25 H 0.07 0.79 6.68 -51.93 -0.35 0.45 16 26 H 0.07 0.68 3.51 -51.93 -0.18 0.50 16 27 H 0.08 1.49 7.41 -51.93 -0.39 1.11 16 28 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 29 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.95 6.46 -51.93 -0.34 0.61 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.84 4.04 -51.93 -0.21 0.63 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.62 6.38 -51.93 -0.33 0.29 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -33.41 313.21 -8.95 -42.36 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.67 Total: -1.73 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.10 Total: -6.44 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.96 Total: -42.89 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.41 -8.95 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362778039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.777 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds