Wall clock time and date at job start Mon Mar 30 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 120.00005 * 2 1 4 4 O 1.21285 * 120.00191 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00170 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47214 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.47000 * 180.02562 * 6 5 3 8 8 H 1.08004 * 120.00606 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99716 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00019 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47103 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46695 * 119.99967 * 11 9 7 14 14 H 1.48493 * 109.47179 * 239.99931 * 11 9 7 15 15 C 1.46506 * 119.99827 * 179.97438 * 2 1 3 16 16 H 1.09007 * 109.57042 * 172.40677 * 15 2 1 17 17 C 1.53133 * 109.67807 * 52.09452 * 15 2 1 18 18 N 1.46943 * 109.34794 * 240.18452 * 17 15 2 19 19 C 1.46936 * 110.97205 * 297.91207 * 18 17 15 20 20 C 1.53131 * 109.35489 * 62.08536 * 19 18 17 21 21 C 1.53383 * 109.58163 * 292.66552 * 15 2 1 22 22 C 1.53387 * 108.59514 * 60.93523 * 21 15 2 23 23 C 1.46912 * 111.05518 * 61.95868 * 18 17 15 24 24 H 1.08997 * 109.47185 * 275.73567 * 1 2 3 25 25 H 1.08993 * 109.47001 * 35.74303 * 1 2 3 26 26 H 1.09003 * 109.47062 * 155.74073 * 1 2 3 27 27 H 1.08995 * 109.46979 * 300.00664 * 5 3 2 28 28 H 1.08998 * 109.46916 * 60.00325 * 5 3 2 29 29 H 1.08996 * 109.47239 * 300.00474 * 6 5 3 30 30 H 1.08998 * 109.46893 * 60.00336 * 6 5 3 31 31 H 0.97000 * 120.00181 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.49444 * 120.21897 * 17 15 2 33 33 H 1.09005 * 109.48722 * 0.14503 * 17 15 2 34 34 H 1.08999 * 109.49379 * 182.05492 * 19 18 17 35 35 H 1.09004 * 109.49019 * 302.12698 * 19 18 17 36 36 H 1.09000 * 109.57656 * 240.13168 * 20 19 18 37 37 H 1.08995 * 109.67739 * 119.81083 * 20 19 18 38 38 H 1.09000 * 110.11641 * 300.30112 * 21 15 2 39 39 H 1.08999 * 109.58383 * 299.15944 * 22 21 15 40 40 H 1.09006 * 109.68500 * 178.83400 * 22 21 15 41 41 H 1.08999 * 109.49017 * 57.97392 * 23 18 17 42 42 H 1.09000 * 109.48314 * 178.00933 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 6 1.6262 4.9402 0.0002 8 1 0.5461 4.9403 0.0002 9 6 2.3156 6.1344 0.0004 10 7 3.6306 6.1343 0.0009 11 14 1.3815 7.7521 0.0011 12 1 -0.0784 7.4807 0.0022 13 1 1.7407 8.5304 1.2138 14 1 1.7398 8.5311 -1.2112 15 6 2.1975 -1.2688 0.0006 16 1 3.2617 -1.0761 -0.1352 17 6 1.6881 -2.1588 -1.1367 18 7 1.1522 -3.4067 -0.5757 19 6 2.2002 -4.1604 0.1261 20 6 2.7245 -3.3281 1.2997 21 6 1.9722 -1.9918 1.3344 22 6 0.4732 -2.2781 1.4885 23 6 0.0109 -3.1399 0.3101 24 1 -0.3633 0.1027 1.0225 25 1 -0.3633 0.8340 -0.6003 26 1 -0.3633 -0.9369 -0.4222 27 1 0.7590 2.5298 -0.8907 28 1 0.7584 2.5302 0.8892 29 1 3.0056 3.5774 0.8906 30 1 3.0069 3.5774 -0.8893 31 1 4.1157 6.9743 0.0006 32 1 2.5099 -2.3883 -1.8149 33 1 0.9010 -1.6375 -1.6818 34 1 1.7861 -5.0967 0.5005 35 1 3.0179 -4.3736 -0.5624 36 1 3.7908 -3.1437 1.1692 37 1 2.5584 -3.8651 2.2336 38 1 2.3223 -1.3726 2.1603 39 1 -0.0796 -1.3387 1.4930 40 1 0.2953 -2.8110 2.4227 41 1 -0.7643 -2.6115 -0.2448 42 1 -0.3879 -4.0831 0.6833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362778039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:00 Heat of formation + Delta-G solvation = -46.159343 kcal Electronic energy + Delta-G solvation = -21261.068988 eV Core-core repulsion = 18240.082351 eV Total energy + Delta-G solvation = -3020.986637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.35665 -40.26224 -36.39361 -35.61720 -33.28622 -32.94598 -32.20469 -31.02378 -27.95497 -27.50670 -24.47266 -24.05661 -23.79774 -22.74968 -20.19382 -18.90271 -18.47945 -17.97933 -17.71080 -17.45484 -16.63957 -16.48424 -16.40601 -15.64545 -14.84093 -14.47156 -14.31807 -14.17156 -13.92699 -13.77579 -13.32995 -13.30690 -13.18215 -13.14700 -12.88907 -12.83157 -12.59385 -12.49609 -12.40442 -11.95420 -11.88991 -11.61229 -11.33474 -11.29320 -11.12505 -10.66459 -10.59162 -9.76335 -9.11143 -8.19300 -6.33782 1.41601 1.43280 1.56626 1.64394 1.99868 2.42388 3.00188 3.13814 3.53717 3.68700 3.77288 3.88786 3.96276 4.17613 4.21185 4.25336 4.30306 4.37324 4.42477 4.44621 4.46574 4.60342 4.66448 4.74387 4.82689 4.97599 4.98321 5.04223 5.05000 5.11537 5.18205 5.18719 5.31310 5.46863 5.59511 5.63524 5.83088 6.03875 6.13372 6.15648 6.36220 6.84758 7.23647 7.36837 8.93799 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.003939 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.150122 B = 7106.206504 C = 7358.607697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.606 5.606 3 C 0.507 3.493 4 O -0.593 6.593 5 C -0.113 4.113 6 C 0.043 3.957 7 C -0.542 4.542 8 H 0.077 0.923 9 C -0.007 4.007 10 N -0.939 5.939 11 Si 0.976 3.024 12 H -0.251 1.251 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.109 3.891 16 H 0.062 0.938 17 C 0.051 3.949 18 N -0.528 5.528 19 C 0.053 3.947 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.165 4.165 23 C 0.050 3.950 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.101 0.899 29 H -0.022 1.022 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 -22.389 1.160 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.338 5.338 3 C 0.298 3.702 4 O -0.473 6.473 5 C -0.152 4.152 6 C 0.005 3.995 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.205 4.205 10 N -0.579 5.579 11 Si 0.799 3.201 12 H -0.174 1.174 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.003 3.997 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.248 5.248 19 C -0.075 4.075 20 C -0.183 4.183 21 C -0.119 4.119 22 C -0.203 4.203 23 C -0.078 4.078 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.119 0.881 29 H -0.003 1.003 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.139 -22.623 0.732 25.227 hybrid contribution 0.973 1.718 0.860 2.154 sum -10.167 -20.905 1.592 23.301 Atomic orbital electron populations 1.22397 0.77578 1.04971 1.03007 1.48019 1.08168 1.04466 1.73185 1.21463 0.87678 0.86859 0.74249 1.90631 1.16822 1.88062 1.51775 1.21625 0.99187 0.89993 1.04439 1.18690 0.93688 0.92650 0.94456 1.21732 0.94012 0.91471 1.50733 0.90475 1.26164 0.95713 1.04039 0.94564 1.70191 1.08411 1.27771 1.51522 0.85246 0.79352 0.77928 0.77554 1.17433 1.20663 1.20581 1.21853 0.96820 0.83707 0.97283 0.91981 1.22550 1.00806 0.89384 0.95143 1.62597 1.08692 1.18437 1.35039 1.22284 0.94468 0.96775 0.93995 1.22230 0.99599 0.95219 1.01237 1.21426 0.97989 0.96507 0.95975 1.22683 0.94263 1.02724 1.00658 1.22387 0.92966 1.00450 0.91948 0.90763 0.90201 0.88075 0.87748 0.88127 1.00317 1.00116 0.92858 0.90210 0.89036 0.88584 0.90490 0.92635 0.89972 0.92938 0.89498 0.90642 0.89260 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 7.61 127.77 0.97 2.15 16 2 N -0.61 -17.64 2.73 -821.62 -2.25 -19.89 16 3 C 0.51 20.77 7.67 87.66 0.67 21.44 16 4 O -0.59 -30.67 15.33 -3.04 -0.05 -30.72 16 5 C -0.11 -4.69 4.27 29.85 0.13 -4.56 16 6 C 0.04 2.45 4.26 29.85 0.13 2.57 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 10 N -0.94 -60.37 13.29 21.45 0.28 -60.09 16 11 Si 0.98 44.55 29.54 68.60 2.03 46.57 16 12 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 15 C 0.11 2.91 2.69 45.16 0.12 3.03 16 16 H 0.06 2.15 6.95 -2.38 -0.02 2.14 16 17 C 0.05 1.06 5.52 86.34 0.48 1.53 16 18 N -0.53 -8.82 5.22 -895.16 -4.67 -13.49 16 19 C 0.05 0.81 6.09 86.34 0.53 1.33 16 20 C -0.14 -2.59 5.75 30.77 0.18 -2.41 16 21 C -0.10 -2.21 3.16 -10.41 -0.03 -2.24 16 22 C -0.16 -2.63 5.18 30.77 0.16 -2.47 16 23 C 0.05 0.66 5.61 86.35 0.48 1.15 16 24 H 0.07 1.26 6.48 -2.39 -0.02 1.24 16 25 H 0.08 1.48 6.68 -2.39 -0.02 1.46 16 26 H 0.10 1.45 3.51 -2.39 -0.01 1.44 16 27 H 0.10 3.79 7.41 -2.39 -0.02 3.77 16 28 H 0.10 3.70 8.11 -2.39 -0.02 3.68 16 29 H -0.02 -1.40 8.10 -2.39 -0.02 -1.42 16 30 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 31 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.81 6.46 -2.38 -0.02 1.80 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.39 4.04 -2.39 -0.01 1.38 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.09 1.00 6.38 -2.39 -0.02 0.98 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -77.50 313.21 0.85 -76.65 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.00 Total: 10.38 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.51 Total: -9.41 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -6.63 Total: -93.47 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.50 0.85 -76.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362778039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.487 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds