Wall clock time and date at job start Mon Mar 30 2020 04:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00253 * 2 1 4 4 C 1.50705 * 109.46695 * 270.00043 * 3 2 1 5 5 H 1.07996 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99597 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00153 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99976 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47190 * 89.99885 * 8 6 4 10 10 H 1.48504 * 109.47198 * 209.99773 * 8 6 4 11 11 H 1.48498 * 109.47243 * 329.99703 * 8 6 4 12 12 C 1.34782 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99796 * 179.97438 * 12 2 1 14 14 C 1.50691 * 120.00036 * 0.02562 * 12 2 1 15 15 H 1.09004 * 109.63845 * 60.40655 * 14 12 2 16 16 C 1.53310 * 109.63838 * 299.99827 * 14 12 2 17 17 C 1.52831 * 108.15762 * 176.41011 * 16 14 12 18 18 C 1.50858 * 111.63293 * 58.96597 * 17 16 14 19 19 H 1.08991 * 108.92033 * 185.66690 * 18 17 16 20 20 C 1.54223 * 112.64288 * 63.94183 * 18 17 16 21 21 C 1.54686 * 102.21338 * 200.02965 * 20 18 17 22 22 N 1.47616 * 107.20930 * 21.63292 * 21 20 18 23 23 C 1.48970 * 108.13337 * 3.38546 * 22 21 20 24 24 H 1.09003 * 111.76986 * 212.60577 * 23 22 21 25 25 C 1.52600 * 109.63898 * 181.02401 * 14 12 2 26 26 H 1.09000 * 109.46688 * 270.00250 * 1 2 3 27 27 H 1.08993 * 109.47044 * 30.00099 * 1 2 3 28 28 H 1.09000 * 109.46967 * 149.99992 * 1 2 3 29 29 H 1.08996 * 109.46793 * 29.99467 * 3 2 1 30 30 H 1.08997 * 109.47134 * 150.00250 * 3 2 1 31 31 H 0.96994 * 119.99894 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.72950 * 56.73892 * 16 14 12 33 33 H 1.09001 * 109.72317 * 296.07351 * 16 14 12 34 34 H 1.08994 * 109.05016 * 298.40724 * 17 16 14 35 35 H 1.09006 * 108.99224 * 179.47845 * 17 16 14 36 36 H 1.09003 * 110.85961 * 318.20628 * 20 18 17 37 37 H 1.08999 * 110.85991 * 81.64275 * 20 18 17 38 38 H 1.09000 * 109.89703 * 141.03297 * 21 20 18 39 39 H 1.09007 * 109.89181 * 262.06825 * 21 20 18 40 40 H 1.00896 * 111.00353 * 241.40057 * 22 21 20 41 41 H 1.09004 * 109.17802 * 61.63088 * 25 14 12 42 42 H 1.08999 * 109.18130 * 302.38883 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4368 3.4174 -3.4340 9 1 2.3064 4.2601 -3.9003 10 1 4.6969 4.2008 -3.4967 11 1 3.5542 2.2205 -4.3050 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 1 0.7636 -2.5362 -0.8924 16 6 0.5022 -2.5573 1.2507 17 6 -0.3119 -3.8483 1.1718 18 6 0.5787 -5.0631 1.0886 19 1 -0.0413 -5.9459 0.9330 20 6 1.4408 -5.2550 2.3529 21 6 2.5753 -6.1725 1.8392 22 7 2.6347 -6.0144 0.3727 23 6 1.6405 -4.9778 -0.0224 24 1 1.2126 -5.1814 -1.0041 25 6 2.3735 -3.6349 0.0268 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5137 30 1 3.1500 1.1383 0.5138 31 1 4.0294 4.4443 -0.8505 32 1 -0.1701 -1.7000 1.2852 33 1 1.1280 -2.5709 2.1430 34 1 -0.9495 -3.8135 0.2885 35 1 -0.9389 -3.9272 2.0600 36 1 1.8397 -4.3015 2.6991 37 1 0.8693 -5.7439 3.1419 38 1 3.5246 -5.8727 2.2832 39 1 2.3578 -7.2097 2.0945 40 1 2.4488 -6.8899 -0.0932 41 1 2.9637 -3.5826 0.9418 42 1 3.0393 -3.5586 -0.8328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380165313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:06 Heat of formation + Delta-G solvation = -40.519036 kcal Electronic energy + Delta-G solvation = -21290.411066 eV Core-core repulsion = 18269.669012 eV Total energy + Delta-G solvation = -3020.742055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49426 -38.60393 -34.95446 -34.73712 -32.53368 -31.70316 -29.29250 -28.30499 -27.53108 -25.84988 -23.81403 -22.63487 -21.82249 -20.98102 -18.86180 -18.26827 -16.80673 -16.44801 -16.14222 -15.75380 -15.16738 -14.56596 -14.40012 -13.90634 -13.70413 -13.61054 -13.18438 -12.82428 -12.45140 -12.22922 -12.19413 -12.05806 -11.75032 -11.70172 -11.39966 -11.20235 -11.13980 -10.85438 -10.75504 -10.51086 -10.43073 -10.27959 -10.12733 -10.00935 -9.57621 -8.73633 -8.53481 -8.40093 -7.56703 -6.00703 -4.05278 3.32290 3.38952 3.43134 3.53557 3.91020 4.13491 4.44798 4.47857 4.60115 4.73310 5.01370 5.09720 5.14138 5.21288 5.27569 5.32877 5.40203 5.47621 5.50957 5.57588 5.68174 5.74134 5.82351 5.84437 5.89627 5.95230 5.99032 6.10343 6.17025 6.23447 6.31497 6.52851 6.64134 6.79862 7.12073 7.29940 7.49601 7.60925 7.96252 8.27999 8.50307 8.95106 9.19296 9.59911 11.07366 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.004540 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.544018 B = 6165.788644 C = 6461.479300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.509 3.491 13 O -0.540 6.540 14 C -0.106 4.106 15 H 0.089 0.911 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.114 4.114 19 H 0.065 0.935 20 C -0.139 4.139 21 C 0.047 3.953 22 N -0.680 5.680 23 C 0.083 3.917 24 H 0.083 0.917 25 C -0.079 4.079 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.333 0.667 41 H 0.071 0.929 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 -17.846 4.847 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.417 6.417 14 C -0.128 4.128 15 H 0.107 0.893 16 C -0.160 4.160 17 C -0.140 4.140 18 C -0.134 4.134 19 H 0.084 0.916 20 C -0.177 4.177 21 C -0.083 4.083 22 N -0.307 5.307 23 C -0.027 4.027 24 H 0.101 0.899 25 C -0.118 4.118 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.947 -17.239 4.885 20.027 hybrid contribution -0.764 -0.091 -0.866 1.159 sum -9.712 -17.330 4.019 20.268 Atomic orbital electron populations 1.21749 0.81850 1.02401 1.00054 1.48126 1.05950 1.07855 1.71588 1.19268 0.92546 0.78226 0.97413 1.21446 1.36375 1.06170 0.92362 0.92517 1.24938 0.95388 0.96422 0.97395 1.69936 1.38527 1.14318 1.30705 0.86502 0.77652 0.78573 0.84734 1.20678 1.21084 1.19894 1.20301 0.87992 0.84979 0.77235 1.90665 1.13997 1.87202 1.49881 1.21282 0.97903 0.94021 0.99595 0.89290 1.21868 0.98626 0.98098 0.97425 1.20907 0.97488 0.93674 1.01953 1.21944 0.96760 0.98575 0.96134 0.91648 1.22791 0.96725 1.00909 0.97317 1.22676 0.98922 0.98169 0.88505 1.62298 1.51517 1.11272 1.05659 1.22556 0.89827 0.93155 0.97144 0.89919 1.21128 0.96632 0.89850 1.04151 0.93609 0.91061 0.92277 0.95145 0.93907 0.92762 0.90003 0.91448 0.91793 0.91901 0.90336 0.91353 0.90799 0.93186 0.85196 0.91011 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 8.81 59.85 0.53 1.85 16 2 N -0.60 -12.98 2.86 -182.96 -0.52 -13.51 16 3 C 0.24 6.54 5.16 -5.19 -0.03 6.52 16 4 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.51 10.82 7.08 -10.99 -0.08 10.74 16 13 O -0.54 -14.09 15.54 5.56 0.09 -14.01 16 14 C -0.11 -1.61 1.68 -91.82 -0.15 -1.76 16 15 H 0.09 1.23 7.43 -51.93 -0.39 0.85 16 16 C -0.12 -1.49 4.72 -26.66 -0.13 -1.62 16 17 C -0.10 -0.96 5.38 -27.89 -0.15 -1.11 16 18 C -0.11 -1.09 2.89 -90.58 -0.26 -1.36 16 19 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 20 C -0.14 -1.35 5.84 -25.20 -0.15 -1.50 16 21 C 0.05 0.46 7.30 -2.54 -0.02 0.45 16 22 N -0.68 -7.51 6.91 -103.20 -0.71 -8.22 16 23 C 0.08 0.93 3.93 -66.05 -0.26 0.67 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.08 -1.19 3.66 -26.90 -0.10 -1.29 16 26 H 0.05 0.62 6.89 -51.93 -0.36 0.26 16 27 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.77 6.06 -51.93 -0.31 0.46 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.08 0.96 4.52 -51.93 -0.23 0.72 16 33 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.88 6.02 -51.93 -0.31 0.57 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.33 2.99 8.92 -39.29 -0.35 2.64 16 41 H 0.07 1.21 7.02 -51.93 -0.36 0.84 16 42 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -33.47 319.03 -8.65 -42.13 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.81 Total: 0.19 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.21 Total: -2.25 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.50 Total: -48.04 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.47 -8.65 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.607 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds