Wall clock time and date at job start Mon Mar 30 2020 04:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00253 * 2 1 4 4 C 1.50705 * 109.46695 * 270.00043 * 3 2 1 5 5 H 1.07996 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99597 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00153 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99976 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47190 * 89.99885 * 8 6 4 10 10 H 1.48504 * 109.47198 * 209.99773 * 8 6 4 11 11 H 1.48498 * 109.47243 * 329.99703 * 8 6 4 12 12 C 1.34782 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99796 * 179.97438 * 12 2 1 14 14 C 1.50691 * 120.00036 * 0.02562 * 12 2 1 15 15 H 1.09004 * 109.63845 * 60.40655 * 14 12 2 16 16 C 1.53310 * 109.63838 * 299.99827 * 14 12 2 17 17 C 1.52831 * 108.15762 * 176.41011 * 16 14 12 18 18 C 1.50858 * 111.63293 * 58.96597 * 17 16 14 19 19 H 1.08991 * 108.92033 * 185.66690 * 18 17 16 20 20 C 1.54223 * 112.64288 * 63.94183 * 18 17 16 21 21 C 1.54686 * 102.21338 * 200.02965 * 20 18 17 22 22 N 1.47616 * 107.20930 * 21.63292 * 21 20 18 23 23 C 1.48970 * 108.13337 * 3.38546 * 22 21 20 24 24 H 1.09003 * 111.76986 * 212.60577 * 23 22 21 25 25 C 1.52600 * 109.63898 * 181.02401 * 14 12 2 26 26 H 1.09000 * 109.46688 * 270.00250 * 1 2 3 27 27 H 1.08993 * 109.47044 * 30.00099 * 1 2 3 28 28 H 1.09000 * 109.46967 * 149.99992 * 1 2 3 29 29 H 1.08996 * 109.46793 * 29.99467 * 3 2 1 30 30 H 1.08997 * 109.47134 * 150.00250 * 3 2 1 31 31 H 0.96994 * 119.99894 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.72950 * 56.73892 * 16 14 12 33 33 H 1.09001 * 109.72317 * 296.07351 * 16 14 12 34 34 H 1.08994 * 109.05016 * 298.40724 * 17 16 14 35 35 H 1.09006 * 108.99224 * 179.47845 * 17 16 14 36 36 H 1.09003 * 110.85961 * 318.20628 * 20 18 17 37 37 H 1.08999 * 110.85991 * 81.64275 * 20 18 17 38 38 H 1.09000 * 109.89703 * 141.03297 * 21 20 18 39 39 H 1.09007 * 109.89181 * 262.06825 * 21 20 18 40 40 H 1.00896 * 111.00353 * 241.40057 * 22 21 20 41 41 H 1.09004 * 109.17802 * 61.63088 * 25 14 12 42 42 H 1.08999 * 109.18130 * 302.38883 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4368 3.4174 -3.4340 9 1 2.3064 4.2601 -3.9003 10 1 4.6969 4.2008 -3.4967 11 1 3.5542 2.2205 -4.3050 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 1 0.7636 -2.5362 -0.8924 16 6 0.5022 -2.5573 1.2507 17 6 -0.3119 -3.8483 1.1718 18 6 0.5787 -5.0631 1.0886 19 1 -0.0413 -5.9459 0.9330 20 6 1.4408 -5.2550 2.3529 21 6 2.5753 -6.1725 1.8392 22 7 2.6347 -6.0144 0.3727 23 6 1.6405 -4.9778 -0.0224 24 1 1.2126 -5.1814 -1.0041 25 6 2.3735 -3.6349 0.0268 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5137 30 1 3.1500 1.1383 0.5138 31 1 4.0294 4.4443 -0.8505 32 1 -0.1701 -1.7000 1.2852 33 1 1.1280 -2.5709 2.1430 34 1 -0.9495 -3.8135 0.2885 35 1 -0.9389 -3.9272 2.0600 36 1 1.8397 -4.3015 2.6991 37 1 0.8693 -5.7439 3.1419 38 1 3.5246 -5.8727 2.2832 39 1 2.3578 -7.2097 2.0945 40 1 2.4488 -6.8899 -0.0932 41 1 2.9637 -3.5826 0.9418 42 1 3.0393 -3.5586 -0.8328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380165313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:05 Heat of formation + Delta-G solvation = -64.584851 kcal Electronic energy + Delta-G solvation = -21291.454638 eV Core-core repulsion = 18269.669012 eV Total energy + Delta-G solvation = -3021.785627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63093 -40.02724 -36.65596 -35.99160 -34.61901 -32.70826 -30.56654 -29.26914 -29.14852 -27.39903 -25.56806 -23.61879 -23.29254 -21.83832 -20.09412 -19.56462 -18.68277 -17.69497 -17.62731 -17.18908 -16.58563 -16.27742 -15.81830 -15.06320 -14.95242 -14.61667 -14.39426 -14.15674 -13.78848 -13.69788 -13.53942 -13.44234 -13.24521 -12.89996 -12.79021 -12.61746 -12.47761 -12.35710 -12.23511 -12.21362 -11.74762 -11.63880 -11.36696 -11.18605 -11.02726 -10.65189 -10.40488 -9.40596 -9.37160 -8.23318 -6.38675 1.35082 1.38759 1.49070 1.86679 2.31698 2.46534 3.05808 3.20923 3.58552 3.65177 3.91571 3.96215 4.11091 4.11447 4.32096 4.35820 4.41254 4.51622 4.52457 4.59440 4.67306 4.72272 4.85549 4.89779 4.97466 5.01365 5.01721 5.08144 5.13169 5.20862 5.25530 5.30251 5.40012 5.46812 5.54963 5.56868 5.85273 5.93327 6.05546 6.59477 6.69177 6.81220 7.27666 7.51479 8.83792 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.004540 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.544018 B = 6165.788644 C = 6461.479300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.495 3.505 13 O -0.604 6.604 14 C -0.091 4.091 15 H 0.115 0.885 16 C -0.118 4.118 17 C -0.096 4.096 18 C -0.107 4.107 19 H 0.093 0.907 20 C -0.139 4.139 21 C 0.045 3.955 22 N -0.700 5.700 23 C 0.087 3.913 24 H 0.101 0.899 25 C -0.072 4.072 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.024 0.976 30 H -0.007 1.007 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.347 0.653 41 H 0.041 0.959 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -19.655 3.963 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.285 3.715 13 O -0.486 6.486 14 C -0.113 4.113 15 H 0.132 0.868 16 C -0.155 4.155 17 C -0.134 4.134 18 C -0.127 4.127 19 H 0.111 0.889 20 C -0.178 4.178 21 C -0.084 4.084 22 N -0.329 5.329 23 C -0.022 4.022 24 H 0.119 0.881 25 C -0.111 4.111 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.042 0.958 30 H 0.011 0.989 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.060 0.940 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.146 -19.069 4.010 22.962 hybrid contribution 0.285 0.479 -0.534 0.771 sum -11.862 -18.590 3.476 22.324 Atomic orbital electron populations 1.22097 0.77978 1.03947 1.02452 1.48160 1.08368 1.06220 1.71221 1.18739 0.90981 0.80608 0.96009 1.21708 1.36939 1.06541 0.93010 0.92928 1.25892 0.94818 0.96395 1.02137 1.70058 1.38970 1.14784 1.33116 0.85388 0.78173 0.78185 0.78895 1.18504 1.20605 1.19873 1.21527 0.87713 0.86790 0.75485 1.90624 1.17101 1.88247 1.52591 1.21267 0.97775 0.89810 1.02410 0.86761 1.21869 0.98179 1.00695 0.94748 1.20912 0.97136 0.91302 1.04059 1.21942 0.96291 0.99892 0.94582 0.88912 1.22786 0.96851 0.99844 0.98270 1.22671 0.98235 0.99641 0.87841 1.62129 1.52146 1.12104 1.06535 1.22477 0.90068 0.90615 0.99032 0.88126 1.21045 0.96432 0.92620 1.01012 0.90697 0.91690 0.88563 0.95792 0.98921 0.92381 0.88940 0.93137 0.89645 0.89735 0.92792 0.89155 0.92969 0.90735 0.83561 0.93973 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 8.81 127.77 1.13 3.42 16 2 N -0.61 -26.75 2.86 -851.13 -2.43 -29.18 16 3 C 0.26 14.50 5.16 85.63 0.44 14.94 16 4 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 8 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.50 21.85 7.08 87.65 0.62 22.47 16 13 O -0.60 -33.87 15.54 -3.03 -0.05 -33.92 16 14 C -0.09 -2.69 1.68 -11.57 -0.02 -2.71 16 15 H 0.11 2.83 7.43 -2.39 -0.02 2.82 16 16 C -0.12 -2.59 4.72 30.64 0.14 -2.44 16 17 C -0.10 -1.37 5.38 29.84 0.16 -1.21 16 18 C -0.11 -1.65 2.89 -10.77 -0.03 -1.68 16 19 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 20 C -0.14 -2.41 5.84 31.58 0.18 -2.22 16 21 C 0.05 0.84 7.30 86.74 0.63 1.48 16 22 N -0.70 -14.56 6.91 -480.43 -3.32 -17.88 16 23 C 0.09 1.80 3.93 44.85 0.18 1.98 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 C -0.07 -2.22 3.66 30.48 0.11 -2.11 16 26 H 0.07 1.82 6.89 -2.39 -0.02 1.80 16 27 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 28 H 0.10 2.15 6.06 -2.39 -0.01 2.14 16 29 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 30 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.09 1.84 4.52 -2.39 -0.01 1.83 16 33 H 0.05 1.30 6.71 -2.39 -0.02 1.28 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 1.20 6.02 -2.39 -0.01 1.19 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.35 5.46 8.92 -89.70 -0.80 4.66 16 41 H 0.04 1.51 7.02 -2.39 -0.02 1.50 16 42 H 0.04 1.34 8.02 -2.39 -0.02 1.32 16 Total: -1.00 -78.84 319.03 0.97 -77.86 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.21 Total: 11.89 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.25 Total: 0.63 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -5.47 Total: -104.42 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.05 Total: -33.92 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.84 0.97 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.280 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds