Wall clock time and date at job start Mon Mar 30 2020 04:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99933 * 2 1 4 4 C 1.50703 * 109.47144 * 270.00260 * 3 2 1 5 5 H 1.07994 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00338 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99801 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46932 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46875 * 120.00045 * 8 6 4 11 11 H 1.48495 * 109.47246 * 240.00111 * 8 6 4 12 12 C 1.34781 * 120.00177 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99782 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99846 * 359.97438 * 12 2 1 15 15 H 1.09007 * 109.09087 * 60.90705 * 14 12 2 16 16 C 1.52576 * 109.04965 * 301.84753 * 14 12 2 17 17 C 1.53705 * 111.49992 * 184.70408 * 16 14 12 18 18 C 1.51918 * 107.28128 * 58.10787 * 17 16 14 19 19 H 1.08999 * 110.99201 * 56.85843 * 18 17 16 20 20 C 1.53980 * 115.30859 * 184.85517 * 18 17 16 21 21 C 1.55340 * 101.69824 * 153.44816 * 20 18 17 22 22 N 1.48619 * 107.17229 * 337.66936 * 21 20 18 23 23 C 1.45824 * 107.00565 * 354.93549 * 22 21 20 24 24 H 1.09001 * 109.24723 * 274.68853 * 23 22 21 25 25 C 1.51436 * 117.66829 * 149.41212 * 23 22 21 26 26 H 1.09001 * 109.47016 * 269.99599 * 1 2 3 27 27 H 1.08997 * 109.47160 * 30.00176 * 1 2 3 28 28 H 1.09005 * 109.46568 * 149.99954 * 1 2 3 29 29 H 1.09004 * 109.46968 * 29.99781 * 3 2 1 30 30 H 1.08997 * 109.47258 * 149.99559 * 3 2 1 31 31 H 0.96995 * 119.99835 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.07256 * 305.22775 * 16 14 12 33 33 H 1.08997 * 109.07455 * 64.24859 * 16 14 12 34 34 H 1.08993 * 109.89409 * 177.55187 * 17 16 14 35 35 H 1.09001 * 109.89135 * 298.66502 * 17 16 14 36 36 H 1.09005 * 110.91733 * 35.40845 * 20 18 17 37 37 H 1.08997 * 111.13076 * 271.58226 * 20 18 17 38 38 H 1.09002 * 109.92824 * 218.22913 * 21 20 18 39 39 H 1.08996 * 109.92929 * 97.10754 * 21 20 18 40 40 H 1.00902 * 111.00432 * 116.18897 * 22 21 20 41 41 H 1.09003 * 109.87979 * 298.05738 * 25 23 22 42 42 H 1.09000 * 109.87891 * 59.13459 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5524 3.6187 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.8607 2.4165 -4.3673 10 1 2.7997 4.7374 -3.6678 11 1 4.9004 3.5259 -3.6665 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7731 -2.5304 -0.9004 16 6 0.4780 -2.5233 1.2249 17 6 -0.2320 -3.8814 1.3439 18 6 0.8460 -4.9494 1.4159 19 1 1.5262 -4.7622 2.2468 20 6 0.3344 -6.4017 1.4217 21 6 1.5432 -7.1639 0.8127 22 7 2.3372 -6.1774 0.0348 23 6 1.5964 -4.9215 0.0566 24 1 0.8597 -4.9250 -0.7468 25 6 2.3924 -3.6345 -0.0011 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5139 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0285 4.4449 -0.8503 32 1 1.0776 -2.3552 2.1195 33 1 -0.2719 -1.7362 1.1459 34 1 -0.8384 -3.9048 2.2493 35 1 -0.8619 -4.0484 0.4701 36 1 -0.5493 -6.5056 0.7919 37 1 0.1301 -6.7423 2.4367 38 1 1.1888 -7.9573 0.1546 39 1 2.1547 -7.5877 1.6093 40 1 3.2578 -6.0611 0.4311 41 1 3.0431 -3.5618 0.8704 42 1 2.9886 -3.6080 -0.9132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380165320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:07 Heat of formation + Delta-G solvation = -42.521726 kcal Electronic energy + Delta-G solvation = -21095.560751 eV Core-core repulsion = 18074.731853 eV Total energy + Delta-G solvation = -3020.828898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48363 -38.71101 -35.15384 -34.86255 -32.56948 -31.92154 -29.35136 -28.34169 -27.43867 -25.85562 -23.66465 -22.37389 -21.57060 -20.85014 -20.27874 -18.35364 -16.68079 -16.41977 -15.62846 -15.53048 -15.21383 -14.82081 -14.42704 -14.25169 -14.05326 -13.53220 -13.12051 -12.93169 -12.56227 -12.34728 -12.21327 -11.93395 -11.88625 -11.74400 -11.32710 -11.19433 -11.08183 -10.90516 -10.83410 -10.66791 -10.56528 -10.35821 -10.15097 -10.11455 -9.59221 -8.78234 -8.57643 -8.43103 -7.61790 -6.03618 -4.08285 3.30400 3.37636 3.40971 3.47157 3.81435 4.12239 4.45391 4.48147 4.54198 4.68918 4.89799 4.99254 5.11534 5.17763 5.29469 5.31391 5.33342 5.39929 5.47924 5.55739 5.60474 5.64161 5.74375 5.79918 5.86954 5.90528 5.94083 6.01467 6.13434 6.18102 6.24857 6.39990 6.45569 6.75265 7.07410 7.27823 7.45470 7.56198 7.93155 8.24597 8.44500 8.91788 9.12610 9.57054 11.04486 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004286 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.405574 B = 6531.312936 C = 6889.218364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.508 3.492 13 O -0.541 6.541 14 C -0.100 4.100 15 H 0.090 0.910 16 C -0.125 4.125 17 C -0.101 4.101 18 C -0.131 4.131 19 H 0.077 0.923 20 C -0.136 4.136 21 C 0.044 3.956 22 N -0.671 5.671 23 C 0.074 3.926 24 H 0.080 0.920 25 C -0.091 4.091 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.337 0.663 41 H 0.070 0.930 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -17.542 5.231 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.334 5.334 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.294 3.706 13 O -0.419 6.419 14 C -0.123 4.123 15 H 0.108 0.892 16 C -0.163 4.163 17 C -0.139 4.139 18 C -0.151 4.151 19 H 0.096 0.904 20 C -0.174 4.174 21 C -0.085 4.085 22 N -0.298 5.298 23 C -0.036 4.036 24 H 0.098 0.902 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.302 -17.568 4.595 20.403 hybrid contribution 0.247 0.785 -0.043 0.824 sum -9.055 -16.783 4.552 19.606 Atomic orbital electron populations 1.21798 0.81788 1.02473 1.00161 1.48128 1.06000 1.07855 1.71387 1.19284 0.92539 0.78182 0.97482 1.21481 1.36382 1.06188 0.92351 0.92430 1.24943 0.95366 0.96406 0.97444 1.69944 1.38534 1.14307 1.30664 0.86443 0.78102 0.78285 0.84603 1.19793 1.20970 1.20855 1.20290 0.88000 0.84990 0.77293 1.90659 1.13962 1.87205 1.50073 1.21267 0.97300 0.93676 1.00022 0.89196 1.21858 0.98931 0.97983 0.97520 1.21362 0.96875 0.93778 1.01861 1.22765 0.98818 0.94254 0.99285 0.90434 1.22713 0.98481 0.95231 1.01009 1.23058 0.94125 0.95659 0.95680 1.62033 1.05550 1.07789 1.54399 1.22100 0.95942 0.89140 0.96461 0.90176 1.21199 0.96912 0.90996 1.03817 0.93504 0.90972 0.92171 0.95079 0.93905 0.92790 0.91767 0.89840 0.91704 0.91504 0.90947 0.91219 0.90806 0.92755 0.84707 0.91150 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 8.74 59.85 0.52 1.80 16 2 N -0.60 -12.77 2.86 -182.95 -0.52 -13.29 16 3 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.51 10.57 7.07 -10.99 -0.08 10.49 16 13 O -0.54 -13.76 15.54 5.56 0.09 -13.67 16 14 C -0.10 -1.49 1.73 -91.59 -0.16 -1.65 16 15 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 16 C -0.13 -1.50 4.68 -26.58 -0.12 -1.62 16 17 C -0.10 -0.96 5.62 -26.91 -0.15 -1.11 16 18 C -0.13 -1.30 2.63 -89.44 -0.24 -1.54 16 19 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 20 C -0.14 -1.14 6.58 -24.98 -0.16 -1.31 16 21 C 0.04 0.39 7.61 -1.63 -0.01 0.38 16 22 N -0.67 -7.39 7.40 -104.37 -0.77 -8.16 16 23 C 0.07 0.85 2.73 -67.87 -0.19 0.67 16 24 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 25 C -0.09 -1.30 4.33 -27.12 -0.12 -1.41 16 26 H 0.05 0.62 7.03 -51.93 -0.37 0.26 16 27 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.77 5.89 -51.93 -0.31 0.47 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.08 0.94 4.36 -51.93 -0.23 0.71 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.60 7.97 -51.93 -0.41 0.18 16 36 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.34 3.55 8.74 -39.29 -0.34 3.20 16 41 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -32.81 323.75 -8.78 -41.59 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.01 Total: 0.33 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.15 Total: -2.62 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.56 Total: -47.57 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.81 -8.78 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.931 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds