Wall clock time and date at job start Mon Mar 30 2020 04:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99933 * 2 1 4 4 C 1.50703 * 109.47144 * 270.00260 * 3 2 1 5 5 H 1.07994 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00338 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99801 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46932 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46875 * 120.00045 * 8 6 4 11 11 H 1.48495 * 109.47246 * 240.00111 * 8 6 4 12 12 C 1.34781 * 120.00177 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99782 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99846 * 359.97438 * 12 2 1 15 15 H 1.09007 * 109.09087 * 60.90705 * 14 12 2 16 16 C 1.52576 * 109.04965 * 301.84753 * 14 12 2 17 17 C 1.53705 * 111.49992 * 184.70408 * 16 14 12 18 18 C 1.51918 * 107.28128 * 58.10787 * 17 16 14 19 19 H 1.08999 * 110.99201 * 56.85843 * 18 17 16 20 20 C 1.53980 * 115.30859 * 184.85517 * 18 17 16 21 21 C 1.55340 * 101.69824 * 153.44816 * 20 18 17 22 22 N 1.48619 * 107.17229 * 337.66936 * 21 20 18 23 23 C 1.45824 * 107.00565 * 354.93549 * 22 21 20 24 24 H 1.09001 * 109.24723 * 274.68853 * 23 22 21 25 25 C 1.51436 * 117.66829 * 149.41212 * 23 22 21 26 26 H 1.09001 * 109.47016 * 269.99599 * 1 2 3 27 27 H 1.08997 * 109.47160 * 30.00176 * 1 2 3 28 28 H 1.09005 * 109.46568 * 149.99954 * 1 2 3 29 29 H 1.09004 * 109.46968 * 29.99781 * 3 2 1 30 30 H 1.08997 * 109.47258 * 149.99559 * 3 2 1 31 31 H 0.96995 * 119.99835 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.07256 * 305.22775 * 16 14 12 33 33 H 1.08997 * 109.07455 * 64.24859 * 16 14 12 34 34 H 1.08993 * 109.89409 * 177.55187 * 17 16 14 35 35 H 1.09001 * 109.89135 * 298.66502 * 17 16 14 36 36 H 1.09005 * 110.91733 * 35.40845 * 20 18 17 37 37 H 1.08997 * 111.13076 * 271.58226 * 20 18 17 38 38 H 1.09002 * 109.92824 * 218.22913 * 21 20 18 39 39 H 1.08996 * 109.92929 * 97.10754 * 21 20 18 40 40 H 1.00902 * 111.00432 * 116.18897 * 22 21 20 41 41 H 1.09003 * 109.87979 * 298.05738 * 25 23 22 42 42 H 1.09000 * 109.87891 * 59.13459 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5524 3.6187 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.8607 2.4165 -4.3673 10 1 2.7997 4.7374 -3.6678 11 1 4.9004 3.5259 -3.6665 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7731 -2.5304 -0.9004 16 6 0.4780 -2.5233 1.2249 17 6 -0.2320 -3.8814 1.3439 18 6 0.8460 -4.9494 1.4159 19 1 1.5262 -4.7622 2.2468 20 6 0.3344 -6.4017 1.4217 21 6 1.5432 -7.1639 0.8127 22 7 2.3372 -6.1774 0.0348 23 6 1.5964 -4.9215 0.0566 24 1 0.8597 -4.9250 -0.7468 25 6 2.3924 -3.6345 -0.0011 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5139 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0285 4.4449 -0.8503 32 1 1.0776 -2.3552 2.1195 33 1 -0.2719 -1.7362 1.1459 34 1 -0.8384 -3.9048 2.2493 35 1 -0.8619 -4.0484 0.4701 36 1 -0.5493 -6.5056 0.7919 37 1 0.1301 -6.7423 2.4367 38 1 1.1888 -7.9573 0.1546 39 1 2.1547 -7.5877 1.6093 40 1 3.2578 -6.0611 0.4311 41 1 3.0431 -3.5618 0.8704 42 1 2.9886 -3.6080 -0.9132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380165320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:07 Heat of formation + Delta-G solvation = -65.689372 kcal Electronic energy + Delta-G solvation = -21096.565376 eV Core-core repulsion = 18074.731853 eV Total energy + Delta-G solvation = -3021.833523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63021 -40.06949 -36.68728 -36.22824 -34.65572 -32.85019 -30.70514 -29.26652 -29.02082 -27.39769 -25.37811 -23.54904 -22.75476 -21.65704 -21.17353 -19.93081 -18.71390 -17.93249 -17.17061 -16.60257 -16.49420 -16.31696 -15.67788 -15.46487 -15.25993 -14.60284 -14.50343 -14.26963 -13.90010 -13.54544 -13.49561 -13.46670 -13.25356 -12.98083 -12.85120 -12.65203 -12.50912 -12.29682 -12.17569 -12.00529 -11.77296 -11.68290 -11.56053 -11.29585 -11.09013 -10.66821 -10.44803 -9.42884 -9.38305 -8.24350 -6.39526 1.34909 1.37549 1.49418 1.82922 2.29375 2.43639 3.04980 3.14703 3.50332 3.66971 3.81620 3.92808 4.06291 4.12220 4.26653 4.27358 4.43134 4.47574 4.52623 4.55254 4.60466 4.67603 4.85288 4.89794 4.92407 4.97745 5.02400 5.09162 5.15786 5.20901 5.21711 5.23433 5.26213 5.36122 5.54067 5.55158 5.83098 5.94725 6.04405 6.42949 6.68199 6.78470 7.26523 7.47696 8.82899 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004286 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.405574 B = 6531.312936 C = 6889.218364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.496 3.504 13 O -0.601 6.601 14 C -0.085 4.085 15 H 0.110 0.890 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.128 4.128 19 H 0.067 0.933 20 C -0.127 4.127 21 C 0.041 3.959 22 N -0.685 5.685 23 C 0.079 3.921 24 H 0.083 0.917 25 C -0.086 4.086 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.025 0.975 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.336 0.664 41 H 0.051 0.949 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 -19.077 4.740 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.285 3.715 13 O -0.483 6.483 14 C -0.107 4.107 15 H 0.128 0.872 16 C -0.158 4.158 17 C -0.129 4.129 18 C -0.148 4.148 19 H 0.085 0.915 20 C -0.165 4.165 21 C -0.088 4.088 22 N -0.312 5.312 23 C -0.031 4.031 24 H 0.101 0.899 25 C -0.124 4.124 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.043 0.957 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.152 0.848 41 H 0.070 0.930 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.021 -19.121 4.113 22.958 hybrid contribution 1.126 1.257 0.152 1.694 sum -10.896 -17.864 4.265 21.355 Atomic orbital electron populations 1.22141 0.78039 1.03923 1.02557 1.48154 1.08348 1.06269 1.71107 1.18753 0.91045 0.80548 0.96003 1.21740 1.36886 1.06527 0.93046 0.92939 1.25878 0.94843 0.96405 1.02077 1.70057 1.38985 1.14793 1.33020 0.85350 0.77886 0.78456 0.79005 1.19144 1.19199 1.20773 1.21444 0.87741 0.86677 0.75605 1.90620 1.16868 1.88202 1.52588 1.21248 0.97209 0.89709 1.02546 0.87172 1.21854 0.98422 1.00475 0.95007 1.21341 0.96576 0.91356 1.03674 1.22740 0.98689 0.95793 0.97567 0.91492 1.22685 0.98275 0.93476 1.02095 1.23154 0.94395 0.95276 0.95951 1.62057 1.05905 1.07894 1.55381 1.21967 0.95433 0.87901 0.97819 0.89929 1.21097 0.96781 0.92877 1.01667 0.90535 0.91658 0.88614 0.95749 0.98713 0.92368 0.93295 0.88453 0.89597 0.89844 0.89996 0.89666 0.90288 0.91770 0.84821 0.92974 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 8.74 127.77 1.12 3.32 16 2 N -0.61 -26.18 2.86 -851.11 -2.43 -28.61 16 3 C 0.26 14.26 5.16 85.63 0.44 14.70 16 4 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 C 0.50 21.23 7.07 87.66 0.62 21.85 16 13 O -0.60 -32.48 15.54 -3.01 -0.05 -32.52 16 14 C -0.09 -2.45 1.73 -11.42 -0.02 -2.47 16 15 H 0.11 2.76 7.44 -2.38 -0.02 2.74 16 16 C -0.12 -2.58 4.68 30.69 0.14 -2.43 16 17 C -0.09 -1.38 5.62 30.48 0.17 -1.21 16 18 C -0.13 -2.19 2.63 -10.03 -0.03 -2.22 16 19 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 20 C -0.13 -1.68 6.58 31.73 0.21 -1.47 16 21 C 0.04 0.63 7.61 86.77 0.66 1.29 16 22 N -0.69 -14.30 7.40 -484.11 -3.58 -17.88 16 23 C 0.08 1.71 2.73 45.40 0.12 1.84 16 24 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 25 C -0.09 -2.48 4.33 30.34 0.13 -2.35 16 26 H 0.08 1.82 7.03 -2.39 -0.02 1.80 16 27 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 28 H 0.10 2.13 5.89 -2.38 -0.01 2.11 16 29 H 0.02 1.36 8.07 -2.38 -0.02 1.34 16 30 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 31 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 33 H 0.10 1.82 4.36 -2.39 -0.01 1.81 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.06 7.97 -2.39 -0.02 1.04 16 36 H 0.08 0.97 8.13 -2.38 -0.02 0.95 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.34 7.01 8.74 -89.69 -0.78 6.23 16 41 H 0.05 1.67 8.03 -2.39 -0.02 1.65 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.31 323.75 0.74 -74.57 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.22 Total: 13.63 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.27 Total: -0.09 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -5.73 Total: -103.24 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.31 0.74 -74.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.885 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds