Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99936 * 2 1 4 4 C 1.50701 * 109.47508 * 263.97110 * 3 2 1 5 5 H 1.08000 * 119.99816 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99922 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00005 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99860 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47286 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47192 * 299.99384 * 8 6 4 11 11 H 1.48506 * 109.47665 * 59.99630 * 8 6 4 12 12 C 1.34781 * 120.00389 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99374 * 3.97715 * 12 2 1 14 14 C 1.50699 * 120.00043 * 183.97965 * 12 2 1 15 15 H 1.09003 * 109.67051 * 28.18394 * 14 12 2 16 16 C 1.53238 * 109.67626 * 267.68093 * 14 12 2 17 17 C 1.52673 * 108.67471 * 177.11195 * 16 14 12 18 18 C 1.53015 * 110.72101 * 61.91911 * 17 16 14 19 19 H 1.09004 * 112.95000 * 72.42062 * 18 17 16 20 20 C 1.55464 * 106.89410 * 196.38807 * 18 17 16 21 21 C 1.54478 * 102.35310 * 77.94078 * 20 18 17 22 22 N 1.47816 * 107.11923 * 23.31068 * 21 20 18 23 23 C 1.46947 * 107.82310 * 1.41074 * 22 21 20 24 24 H 1.08999 * 108.49357 * 89.75297 * 23 22 21 25 25 C 1.51176 * 112.99475 * 210.23097 * 23 22 21 26 26 H 1.09005 * 109.46982 * 95.28365 * 1 2 3 27 27 H 1.09003 * 109.46754 * 215.27750 * 1 2 3 28 28 H 1.08995 * 109.47391 * 335.28412 * 1 2 3 29 29 H 1.08998 * 109.47212 * 143.96711 * 3 2 1 30 30 H 1.09007 * 109.47114 * 23.97172 * 3 2 1 31 31 H 0.97006 * 119.99456 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.60173 * 296.83100 * 16 14 12 33 33 H 1.08998 * 109.60464 * 57.31650 * 16 14 12 34 34 H 1.09002 * 109.20811 * 301.60652 * 17 16 14 35 35 H 1.09002 * 109.19815 * 182.22380 * 17 16 14 36 36 H 1.09007 * 110.54689 * 319.93643 * 20 18 17 37 37 H 1.08993 * 111.49537 * 196.37896 * 20 18 17 38 38 H 1.09007 * 109.90489 * 263.94088 * 21 20 18 39 39 H 1.09000 * 110.06178 * 142.77438 * 21 20 18 40 40 H 1.00897 * 111.00000 * 239.63630 * 22 21 20 41 41 H 1.08992 * 109.12363 * 305.24112 * 25 23 22 42 42 H 1.09000 * 109.07389 * 186.12396 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5779 1.6292 -1.4129 5 1 2.3021 0.9781 -2.2293 6 6 3.2791 2.7897 -1.6633 7 7 3.6154 3.5823 -0.6691 8 14 3.7500 3.2369 -3.4147 9 1 4.4926 4.5229 -3.4147 10 1 4.6098 2.1684 -3.9843 11 1 2.5217 3.3752 -4.2378 12 6 2.1390 -1.1672 -0.0005 13 8 1.5347 -2.2162 -0.0738 14 6 3.6433 -1.1687 0.0901 15 1 3.9794 -0.2820 0.6275 16 6 4.2450 -1.1769 -1.3192 17 6 5.7655 -1.1054 -1.2019 18 6 6.3091 -2.3267 -0.4573 19 1 6.2640 -3.2405 -1.0497 20 6 7.7597 -1.9797 -0.0188 21 6 7.5257 -1.0758 1.2119 22 7 6.1848 -1.4012 1.7421 23 6 5.6216 -2.4754 0.9124 24 1 5.9124 -3.4335 1.3432 25 6 4.1133 -2.4244 0.8243 26 1 -0.3633 -0.0946 -1.0234 27 1 -0.3633 -0.8390 0.5935 28 1 -0.3634 0.9335 0.4297 29 1 3.0988 1.1679 0.6045 30 1 1.5659 2.0529 0.4175 31 1 4.1084 4.3989 -0.8454 32 1 3.9611 -2.0956 -1.8327 33 1 3.8798 -0.3151 -1.8778 34 1 6.0412 -0.2016 -0.6586 35 1 6.2008 -1.0708 -2.2007 36 1 8.2772 -1.4327 -0.8070 37 1 8.3176 -2.8738 0.2591 38 1 7.5631 -0.0276 0.9150 39 1 8.2829 -1.2736 1.9705 40 1 5.5867 -0.5886 1.7363 41 1 3.6965 -2.4263 1.8314 42 1 3.7578 -3.3050 0.2893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380165323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -51.080461 kcal Electronic energy + Delta-G solvation = -21961.840008 eV Core-core repulsion = 18940.639975 eV Total energy + Delta-G solvation = -3021.200033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34016 -38.64739 -34.96521 -34.26927 -32.57101 -31.77775 -29.20944 -28.08871 -27.55987 -25.82801 -23.25538 -22.55065 -22.10257 -20.56435 -18.92829 -18.13058 -16.74659 -16.42766 -15.79592 -15.41683 -15.02134 -14.57357 -14.34023 -14.17693 -13.80750 -13.39106 -12.75952 -12.50795 -12.30481 -12.10715 -11.86881 -11.85113 -11.68785 -11.53449 -11.48870 -11.35432 -11.01192 -10.95888 -10.83065 -10.51007 -10.42831 -10.09218 -9.93550 -9.85269 -9.58432 -8.89377 -8.57540 -8.26238 -7.71088 -6.23110 -4.29357 3.19225 3.24995 3.26987 3.43630 3.98029 4.28807 4.39307 4.73810 4.87595 5.03602 5.10032 5.29827 5.33093 5.42065 5.56728 5.59739 5.72913 5.75364 5.77273 5.92684 5.96060 5.97431 6.06656 6.12994 6.17457 6.22212 6.32668 6.38095 6.43450 6.46980 6.56435 6.69479 6.80908 6.94264 7.10770 7.15828 7.52043 7.58722 7.72079 8.01660 8.32004 8.75023 9.04108 9.37221 10.83290 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.008534 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.129966 B = 3280.226793 C = 4411.458374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.601 5.601 3 C 0.237 3.763 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.578 6.578 14 C -0.096 4.096 15 H 0.095 0.905 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.117 4.117 19 H 0.084 0.916 20 C -0.139 4.139 21 C 0.044 3.956 22 N -0.676 5.676 23 C 0.088 3.912 24 H 0.074 0.926 25 C -0.103 4.103 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.266 0.734 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.341 0.659 41 H 0.066 0.934 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -7.270 1.726 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.332 5.332 3 C 0.117 3.883 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.459 6.459 14 C -0.117 4.117 15 H 0.113 0.887 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.137 4.137 19 H 0.103 0.897 20 C -0.178 4.178 21 C -0.085 4.085 22 N -0.305 5.305 23 C -0.022 4.022 24 H 0.092 0.908 25 C -0.141 4.141 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.084 0.916 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.373 -7.998 2.307 9.907 hybrid contribution 0.109 1.088 -1.854 2.152 sum 5.482 -6.910 0.453 8.832 Atomic orbital electron populations 1.21426 0.81160 1.01298 1.00961 1.48173 1.06262 1.08069 1.70668 1.19481 0.92106 0.79153 0.97556 1.21407 1.36197 1.06757 0.92859 0.92083 1.24902 0.95528 0.95932 0.97204 1.69909 1.38798 1.13015 1.30987 0.86658 0.78836 0.77904 0.84742 1.21129 1.19947 1.20145 1.20403 0.89784 0.83095 0.75629 1.90567 1.70725 1.31990 1.52659 1.21176 0.92142 0.99582 0.98849 0.88735 1.21566 0.94385 1.03615 0.95332 1.21472 0.95940 0.97143 0.99971 1.22755 0.94541 0.99058 0.97389 0.89734 1.22967 0.97053 0.99877 0.97888 1.22698 0.92001 0.98537 0.95262 1.62105 1.03985 1.12393 1.52054 1.21668 0.93750 0.96021 0.90799 0.90817 1.21124 0.93698 0.98451 1.00826 0.93636 0.92403 0.91654 0.94440 0.94596 0.92456 0.92526 0.88288 0.91674 0.92155 0.91188 0.91507 0.92734 0.91199 0.84132 0.91578 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.38 59.85 0.62 2.38 16 2 N -0.60 -12.75 2.87 -182.95 -0.53 -13.27 16 3 C 0.24 5.47 5.00 -5.19 -0.03 5.44 16 4 C -0.53 -13.28 7.44 -34.44 -0.26 -13.54 16 5 H 0.06 1.56 7.28 -52.49 -0.38 1.18 16 6 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -23.59 13.29 55.43 0.74 -22.85 16 8 Si 0.89 19.98 29.54 -169.99 -5.02 14.95 16 9 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 C 0.52 10.99 6.67 -10.98 -0.07 10.92 16 13 O -0.58 -13.26 15.89 5.56 0.09 -13.17 16 14 C -0.10 -1.75 1.79 -91.72 -0.16 -1.92 16 15 H 0.09 1.80 4.65 -51.93 -0.24 1.55 16 16 C -0.11 -1.99 5.19 -26.78 -0.14 -2.13 16 17 C -0.11 -1.66 4.89 -26.89 -0.13 -1.79 16 18 C -0.12 -1.57 3.62 -88.79 -0.32 -1.89 16 19 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.14 -1.65 6.34 -24.65 -0.16 -1.81 16 21 C 0.04 0.57 6.80 -2.54 -0.02 0.55 16 22 N -0.68 -9.66 7.17 -105.59 -0.76 -10.42 16 23 C 0.09 1.23 3.09 -68.10 -0.21 1.02 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 C -0.10 -1.64 4.43 -27.72 -0.12 -1.76 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.02 7.65 -51.93 -0.40 0.63 16 28 H 0.06 1.09 7.78 -51.93 -0.40 0.69 16 29 H 0.04 0.89 5.96 -51.93 -0.31 0.58 16 30 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 31 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 2.05 5.49 -51.93 -0.29 1.76 16 34 H 0.06 1.07 6.82 -51.93 -0.35 0.72 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.79 7.98 -51.92 -0.41 0.38 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.34 5.22 7.13 -39.29 -0.28 4.94 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.29 7.80 -51.93 -0.40 0.89 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -27.18 318.71 -8.57 -35.75 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.80 Total: 7.09 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.09 Total: -2.88 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.55 Total: -46.54 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.18 -8.57 -35.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.334 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds