Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99936 * 2 1 4 4 C 1.50701 * 109.47508 * 263.97110 * 3 2 1 5 5 H 1.08000 * 119.99816 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99922 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00005 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99860 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47286 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47192 * 299.99384 * 8 6 4 11 11 H 1.48506 * 109.47665 * 59.99630 * 8 6 4 12 12 C 1.34781 * 120.00389 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99374 * 3.97715 * 12 2 1 14 14 C 1.50699 * 120.00043 * 183.97965 * 12 2 1 15 15 H 1.09003 * 109.67051 * 28.18394 * 14 12 2 16 16 C 1.53238 * 109.67626 * 267.68093 * 14 12 2 17 17 C 1.52673 * 108.67471 * 177.11195 * 16 14 12 18 18 C 1.53015 * 110.72101 * 61.91911 * 17 16 14 19 19 H 1.09004 * 112.95000 * 72.42062 * 18 17 16 20 20 C 1.55464 * 106.89410 * 196.38807 * 18 17 16 21 21 C 1.54478 * 102.35310 * 77.94078 * 20 18 17 22 22 N 1.47816 * 107.11923 * 23.31068 * 21 20 18 23 23 C 1.46947 * 107.82310 * 1.41074 * 22 21 20 24 24 H 1.08999 * 108.49357 * 89.75297 * 23 22 21 25 25 C 1.51176 * 112.99475 * 210.23097 * 23 22 21 26 26 H 1.09005 * 109.46982 * 95.28365 * 1 2 3 27 27 H 1.09003 * 109.46754 * 215.27750 * 1 2 3 28 28 H 1.08995 * 109.47391 * 335.28412 * 1 2 3 29 29 H 1.08998 * 109.47212 * 143.96711 * 3 2 1 30 30 H 1.09007 * 109.47114 * 23.97172 * 3 2 1 31 31 H 0.97006 * 119.99456 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.60173 * 296.83100 * 16 14 12 33 33 H 1.08998 * 109.60464 * 57.31650 * 16 14 12 34 34 H 1.09002 * 109.20811 * 301.60652 * 17 16 14 35 35 H 1.09002 * 109.19815 * 182.22380 * 17 16 14 36 36 H 1.09007 * 110.54689 * 319.93643 * 20 18 17 37 37 H 1.08993 * 111.49537 * 196.37896 * 20 18 17 38 38 H 1.09007 * 109.90489 * 263.94088 * 21 20 18 39 39 H 1.09000 * 110.06178 * 142.77438 * 21 20 18 40 40 H 1.00897 * 111.00000 * 239.63630 * 22 21 20 41 41 H 1.08992 * 109.12363 * 305.24112 * 25 23 22 42 42 H 1.09000 * 109.07389 * 186.12396 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5779 1.6292 -1.4129 5 1 2.3021 0.9781 -2.2293 6 6 3.2791 2.7897 -1.6633 7 7 3.6154 3.5823 -0.6691 8 14 3.7500 3.2369 -3.4147 9 1 4.4926 4.5229 -3.4147 10 1 4.6098 2.1684 -3.9843 11 1 2.5217 3.3752 -4.2378 12 6 2.1390 -1.1672 -0.0005 13 8 1.5347 -2.2162 -0.0738 14 6 3.6433 -1.1687 0.0901 15 1 3.9794 -0.2820 0.6275 16 6 4.2450 -1.1769 -1.3192 17 6 5.7655 -1.1054 -1.2019 18 6 6.3091 -2.3267 -0.4573 19 1 6.2640 -3.2405 -1.0497 20 6 7.7597 -1.9797 -0.0188 21 6 7.5257 -1.0758 1.2119 22 7 6.1848 -1.4012 1.7421 23 6 5.6216 -2.4754 0.9124 24 1 5.9124 -3.4335 1.3432 25 6 4.1133 -2.4244 0.8243 26 1 -0.3633 -0.0946 -1.0234 27 1 -0.3633 -0.8390 0.5935 28 1 -0.3634 0.9335 0.4297 29 1 3.0988 1.1679 0.6045 30 1 1.5659 2.0529 0.4175 31 1 4.1084 4.3989 -0.8454 32 1 3.9611 -2.0956 -1.8327 33 1 3.8798 -0.3151 -1.8778 34 1 6.0412 -0.2016 -0.6586 35 1 6.2008 -1.0708 -2.2007 36 1 8.2772 -1.4327 -0.8070 37 1 8.3176 -2.8738 0.2591 38 1 7.5631 -0.0276 0.9150 39 1 8.2829 -1.2736 1.9705 40 1 5.5867 -0.5886 1.7363 41 1 3.6965 -2.4263 1.8314 42 1 3.7578 -3.3050 0.2893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380165323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -67.432053 kcal Electronic energy + Delta-G solvation = -21962.549066 eV Core-core repulsion = 18940.639975 eV Total energy + Delta-G solvation = -3021.909091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68631 -40.14209 -36.75597 -35.60108 -34.49951 -32.97204 -30.50156 -29.57579 -29.08605 -27.36113 -25.03938 -23.94881 -23.44199 -21.61281 -20.27690 -19.66367 -18.59391 -18.06445 -17.30415 -16.73508 -16.37614 -16.31070 -15.85649 -15.48160 -15.13750 -14.81121 -14.36788 -13.93333 -13.83015 -13.58842 -13.53370 -13.31469 -13.05599 -12.95742 -12.77855 -12.75755 -12.67332 -12.48654 -12.20206 -12.00857 -11.74216 -11.61238 -11.58543 -11.32205 -10.94705 -10.61805 -10.44768 -9.48232 -9.36231 -8.19576 -6.31391 1.40588 1.42608 1.48790 1.74168 2.31709 2.45754 3.10922 3.29069 3.56975 3.70018 3.83688 3.92003 4.04348 4.22319 4.32595 4.41579 4.47466 4.50452 4.54139 4.55982 4.62413 4.78133 4.82262 4.85360 4.87591 4.90016 4.98704 5.12871 5.16290 5.18053 5.23258 5.27664 5.30209 5.46156 5.49541 5.65733 5.83339 6.02630 6.06573 6.40089 6.53420 6.80902 7.29794 7.41421 8.85860 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.008534 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.129966 B = 3280.226793 C = 4411.458374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.608 5.608 3 C 0.251 3.749 4 C -0.535 4.535 5 H 0.051 0.949 6 C 0.029 3.971 7 N -0.915 5.915 8 Si 0.944 3.056 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.276 1.276 12 C 0.516 3.484 13 O -0.598 6.598 14 C -0.089 4.089 15 H 0.084 0.916 16 C -0.107 4.107 17 C -0.101 4.101 18 C -0.114 4.114 19 H 0.100 0.900 20 C -0.130 4.130 21 C 0.041 3.959 22 N -0.682 5.682 23 C 0.090 3.910 24 H 0.087 0.913 25 C -0.093 4.093 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.332 0.668 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -8.120 1.232 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.338 5.338 3 C 0.130 3.870 4 C -0.573 4.573 5 H 0.069 0.931 6 C -0.171 4.171 7 N -0.555 5.555 8 Si 0.770 3.230 9 H -0.208 1.208 10 H -0.192 1.192 11 H -0.202 1.202 12 C 0.305 3.695 13 O -0.481 6.481 14 C -0.111 4.111 15 H 0.102 0.898 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.134 4.134 19 H 0.118 0.882 20 C -0.169 4.169 21 C -0.088 4.088 22 N -0.311 5.311 23 C -0.020 4.020 24 H 0.105 0.895 25 C -0.131 4.131 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.647 -8.856 1.812 11.220 hybrid contribution -0.359 1.352 -1.674 2.181 sum 6.288 -7.504 0.138 9.791 Atomic orbital electron populations 1.21573 0.79747 1.02577 1.01287 1.48245 1.07391 1.07546 1.70575 1.19183 0.91669 0.79533 0.96586 1.21488 1.35996 1.06585 0.93234 0.93073 1.25497 0.95504 0.95876 1.00263 1.69992 1.39510 1.13397 1.32553 0.85817 0.78509 0.77767 0.80928 1.20811 1.19247 1.20181 1.20915 0.90975 0.82645 0.74924 1.90546 1.71430 1.32435 1.53667 1.21131 0.90214 1.00364 0.99345 0.89809 1.21473 0.96284 1.02206 0.94502 1.21409 0.93944 0.97790 1.00722 1.22741 0.95385 0.98555 0.96703 0.88178 1.22936 0.96044 1.00448 0.97430 1.22789 0.91382 0.98449 0.96179 1.62173 1.04518 1.12033 1.52385 1.21662 0.92203 0.96554 0.91558 0.89475 1.21042 0.95279 0.96844 0.99959 0.93657 0.91585 0.90042 0.95174 0.95878 0.92386 0.92307 0.91345 0.93065 0.91205 0.90406 0.89637 0.93524 0.89977 0.85181 0.92120 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.35 10.38 127.77 1.33 4.67 16 2 N -0.61 -25.97 2.87 -851.12 -2.45 -28.41 16 3 C 0.25 11.76 5.00 85.63 0.43 12.19 16 4 C -0.53 -26.82 7.44 25.60 0.19 -26.63 16 5 H 0.05 2.64 7.28 -2.91 -0.02 2.62 16 6 C 0.03 1.49 5.46 84.65 0.46 1.96 16 7 N -0.92 -48.73 13.29 21.45 0.28 -48.44 16 8 Si 0.94 40.65 29.54 68.60 2.03 42.68 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.52 21.84 6.67 87.66 0.58 22.42 16 13 O -0.60 -27.38 15.89 -3.03 -0.05 -27.43 16 14 C -0.09 -3.26 1.79 -11.50 -0.02 -3.28 16 15 H 0.08 3.25 4.65 -2.39 -0.01 3.24 16 16 C -0.11 -3.79 5.19 30.57 0.16 -3.63 16 17 C -0.10 -2.98 4.89 30.49 0.15 -2.83 16 18 C -0.11 -2.75 3.62 -9.61 -0.03 -2.79 16 19 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 20 C -0.13 -2.68 6.34 31.94 0.20 -2.48 16 21 C 0.04 0.97 6.80 86.63 0.59 1.56 16 22 N -0.68 -18.60 7.17 -487.98 -3.50 -22.10 16 23 C 0.09 2.37 3.09 44.64 0.14 2.51 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 C -0.09 -2.89 4.43 29.96 0.13 -2.76 16 26 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.07 2.31 7.65 -2.39 -0.02 2.29 16 28 H 0.08 2.69 7.78 -2.39 -0.02 2.67 16 29 H 0.03 1.47 5.96 -2.39 -0.01 1.45 16 30 H 0.02 1.14 7.78 -2.38 -0.02 1.12 16 31 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.86 5.49 -2.39 -0.01 2.84 16 34 H 0.05 1.65 6.82 -2.39 -0.02 1.64 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.51 7.98 -2.38 -0.02 1.49 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.16 7.77 -2.38 -0.02 1.14 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.33 10.09 7.13 -89.70 -0.64 9.45 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.38 7.80 -2.39 -0.02 2.37 16 Total: -1.00 -56.62 318.71 0.99 -55.62 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.37 Total: 27.18 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.31 Total: 0.91 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -5.66 Total: -98.96 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -56.62 0.99 -55.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380165323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.809 kcal (2) G-P(sol) polarization free energy of solvation -56.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds