Wall clock time and date at job start Mon Mar 30 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47006 * 240.00615 * 2 1 3 5 5 C 1.50693 * 109.47567 * 59.99387 * 4 2 1 6 6 H 1.08001 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00407 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00085 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46970 * 89.99726 * 9 7 5 11 11 H 1.48498 * 109.47401 * 210.00005 * 9 7 5 12 12 H 1.48498 * 109.46980 * 329.99971 * 9 7 5 13 13 C 1.52999 * 109.47478 * 120.00018 * 2 1 3 14 14 N 1.46907 * 109.47077 * 300.00131 * 13 2 1 15 15 C 1.46897 * 110.99767 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46992 * 179.97438 * 17 16 15 19 19 C 1.35488 * 126.98016 * 269.68450 * 18 17 16 20 20 N 1.30527 * 107.30683 * 179.84146 * 19 18 17 21 21 N 1.28598 * 109.67046 * 0.43713 * 20 19 18 22 22 C 1.30520 * 109.67311 * 359.72325 * 21 20 19 23 23 H 1.09005 * 109.46840 * 299.99836 * 1 2 3 24 24 H 1.08992 * 109.47643 * 60.00111 * 1 2 3 25 25 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47461 * 300.00208 * 3 2 1 28 28 H 1.09005 * 109.47274 * 60.00430 * 3 2 1 29 29 H 1.09006 * 109.47043 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46605 * 299.98907 * 4 2 1 31 31 H 0.96991 * 120.00413 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46754 * 180.02562 * 13 2 1 33 33 H 1.08992 * 109.47167 * 60.00041 * 13 2 1 34 34 H 1.00896 * 110.99852 * 303.95287 * 14 13 2 35 35 H 1.08997 * 109.47661 * 60.00082 * 15 14 13 36 36 H 1.09000 * 109.46973 * 299.99717 * 15 14 13 37 37 H 1.09000 * 109.47531 * 59.99474 * 16 15 14 38 38 H 1.09008 * 109.47250 * 300.00049 * 16 15 14 39 39 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 40 40 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 41 41 H 1.08002 * 126.34725 * 359.97438 * 19 18 17 42 42 H 1.07997 * 126.34949 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 1.4330 0.1388 -4.8058 9 14 2.9451 -2.0001 -3.9035 10 1 2.0866 -3.2109 -3.9495 11 1 3.7375 -1.9072 -5.1560 12 1 3.8651 -2.0895 -2.7413 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0220 -0.6945 3.6703 16 6 1.4925 0.0532 4.8955 17 6 1.9831 -0.6405 6.1678 18 7 1.4765 0.0759 7.3411 19 6 2.0811 1.0955 7.9973 20 7 1.2946 1.4466 8.9780 21 7 0.2447 0.7041 8.9780 22 6 0.3109 -0.1506 7.9938 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1300 -0.7207 -1.2496 30 1 1.6767 -1.7488 -1.2492 31 1 1.6673 -0.1925 -5.6868 32 1 3.1301 -0.7208 1.2493 33 1 1.6768 -1.7488 1.2492 34 1 1.8198 0.9436 2.4402 35 1 3.1119 -0.6939 3.6869 36 1 1.6589 -1.7221 3.6873 37 1 0.4026 0.0523 4.8788 38 1 1.8551 1.0811 4.8787 39 1 3.0730 -0.6398 6.1848 40 1 1.6200 -1.6681 6.1844 41 1 3.0358 1.5373 7.7528 42 1 -0.4264 -0.8997 7.7459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381702768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:03 Heat of formation + Delta-G solvation = 62.738314 kcal Electronic energy + Delta-G solvation = -19699.803613 eV Core-core repulsion = 16715.831884 eV Total energy + Delta-G solvation = -2983.971729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.37496 -38.13441 -36.60093 -34.57923 -32.40204 -31.03980 -30.85961 -27.81195 -26.56302 -26.43379 -24.58491 -22.65537 -22.59466 -21.80532 -21.77440 -17.98182 -17.80430 -16.86151 -16.29130 -16.22651 -15.51484 -15.14060 -14.79074 -14.59052 -14.16728 -14.01828 -13.42704 -13.05052 -12.73941 -12.57043 -12.33681 -12.26149 -11.88920 -11.61092 -11.41076 -11.11799 -10.99837 -10.92098 -10.68012 -10.57686 -10.54812 -10.43020 -9.86485 -9.74983 -9.72650 -9.37127 -8.96897 -8.54565 -8.35685 -6.04489 -4.01123 1.50930 2.12604 2.62838 3.27658 3.35666 3.37770 3.96514 4.03003 4.25545 4.30517 4.43449 4.59822 4.66945 4.80289 4.94359 5.02582 5.25981 5.28192 5.36989 5.47386 5.53980 5.66641 5.71394 5.78894 5.82496 6.03555 6.14378 6.31701 6.49937 6.50831 6.60269 6.72216 6.97974 7.03877 7.10203 7.17480 7.25318 7.36138 7.46547 7.80056 8.42163 8.54691 9.01156 9.58271 11.08592 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.049744 B = 0.002769 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.741803 B =10108.099271 C =10294.714479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.268 1.268 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.061 3.939 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.474 5.474 19 C 0.151 3.849 20 N -0.302 5.302 21 N -0.302 5.302 22 C 0.153 3.847 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.341 0.659 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.216 0.784 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -3.054 20.903 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.318 5.318 15 C -0.069 4.069 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.164 5.164 19 C -0.137 4.137 20 N -0.141 5.141 21 N -0.141 5.141 22 C -0.135 4.135 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.233 0.767 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.000 -2.648 21.911 22.161 hybrid contribution 2.101 -1.376 -1.577 2.966 sum 4.101 -4.025 20.334 21.130 Atomic orbital electron populations 1.21619 0.94479 1.00675 1.00762 1.20425 0.96241 0.95066 0.93218 1.21786 0.99587 0.96439 1.01017 1.19630 0.95800 0.95466 0.93324 1.21122 1.31541 1.13285 0.88669 0.90419 1.25025 0.95807 0.96751 0.96033 1.69904 1.46071 1.40595 0.97853 0.86842 0.81259 0.84035 0.77469 1.20428 1.21546 1.19238 1.22148 0.96321 0.98146 0.89442 1.60521 1.63701 1.06565 1.01005 1.21809 0.96949 0.98713 0.89448 1.21954 1.03056 1.00045 0.92214 1.22006 1.00830 0.96521 0.82357 1.46583 1.17245 1.27815 1.24772 1.26543 1.02135 0.91630 0.93424 1.74264 1.00180 1.21187 1.18476 1.74264 1.16400 1.05114 1.18361 1.26568 0.90519 1.03180 0.93227 0.93729 0.92049 0.94213 0.94136 0.91060 0.94629 0.96960 0.97150 0.92840 0.95779 0.91493 0.83995 0.95270 0.90795 0.89946 0.91120 0.88344 0.88097 0.76716 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.06 37.16 0.30 -1.85 16 2 C -0.05 -0.89 0.60 -154.51 -0.09 -0.98 16 3 C -0.13 -2.26 7.89 37.16 0.29 -1.97 16 4 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 5 C -0.51 -13.67 8.20 -34.45 -0.28 -13.95 16 6 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 9 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.07 0.99 4.65 -3.82 -0.02 0.97 16 14 N -0.69 -7.96 5.71 -113.78 -0.65 -8.61 16 15 C 0.06 0.49 5.68 -3.83 -0.02 0.47 16 16 C -0.13 -0.83 5.80 -26.73 -0.16 -0.98 16 17 C 0.11 0.44 6.20 -4.04 -0.03 0.42 16 18 N -0.47 -3.25 2.75 -119.97 -0.33 -3.58 16 19 C 0.15 1.23 12.74 -89.95 -1.15 0.09 16 20 N -0.30 -3.70 12.21 29.69 0.36 -3.34 16 21 N -0.30 -3.71 12.21 29.69 0.36 -3.35 16 22 C 0.15 1.27 12.74 -89.94 -1.15 0.12 16 23 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 24 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 28 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.34 3.87 6.77 -39.29 -0.27 3.61 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.22 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -33.18 336.94 -8.56 -41.74 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.01 Total: -1.86 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.48 Total: -16.12 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.52 Total: -45.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.18 -8.56 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381702768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.479 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds