Wall clock time and date at job start Mon Mar 30 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47006 * 240.00615 * 2 1 3 5 5 C 1.50693 * 109.47567 * 59.99387 * 4 2 1 6 6 H 1.08001 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00407 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00085 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46970 * 89.99726 * 9 7 5 11 11 H 1.48498 * 109.47401 * 210.00005 * 9 7 5 12 12 H 1.48498 * 109.46980 * 329.99971 * 9 7 5 13 13 C 1.52999 * 109.47478 * 120.00018 * 2 1 3 14 14 N 1.46907 * 109.47077 * 300.00131 * 13 2 1 15 15 C 1.46897 * 110.99767 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46992 * 179.97438 * 17 16 15 19 19 C 1.35488 * 126.98016 * 269.68450 * 18 17 16 20 20 N 1.30527 * 107.30683 * 179.84146 * 19 18 17 21 21 N 1.28598 * 109.67046 * 0.43713 * 20 19 18 22 22 C 1.30520 * 109.67311 * 359.72325 * 21 20 19 23 23 H 1.09005 * 109.46840 * 299.99836 * 1 2 3 24 24 H 1.08992 * 109.47643 * 60.00111 * 1 2 3 25 25 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47461 * 300.00208 * 3 2 1 28 28 H 1.09005 * 109.47274 * 60.00430 * 3 2 1 29 29 H 1.09006 * 109.47043 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46605 * 299.98907 * 4 2 1 31 31 H 0.96991 * 120.00413 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46754 * 180.02562 * 13 2 1 33 33 H 1.08992 * 109.47167 * 60.00041 * 13 2 1 34 34 H 1.00896 * 110.99852 * 303.95287 * 14 13 2 35 35 H 1.08997 * 109.47661 * 60.00082 * 15 14 13 36 36 H 1.09000 * 109.46973 * 299.99717 * 15 14 13 37 37 H 1.09000 * 109.47531 * 59.99474 * 16 15 14 38 38 H 1.09008 * 109.47250 * 300.00049 * 16 15 14 39 39 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 40 40 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 41 41 H 1.08002 * 126.34725 * 359.97438 * 19 18 17 42 42 H 1.07997 * 126.34949 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 1.4330 0.1388 -4.8058 9 14 2.9451 -2.0001 -3.9035 10 1 2.0866 -3.2109 -3.9495 11 1 3.7375 -1.9072 -5.1560 12 1 3.8651 -2.0895 -2.7413 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0220 -0.6945 3.6703 16 6 1.4925 0.0532 4.8955 17 6 1.9831 -0.6405 6.1678 18 7 1.4765 0.0759 7.3411 19 6 2.0811 1.0955 7.9973 20 7 1.2946 1.4466 8.9780 21 7 0.2447 0.7041 8.9780 22 6 0.3109 -0.1506 7.9938 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1300 -0.7207 -1.2496 30 1 1.6767 -1.7488 -1.2492 31 1 1.6673 -0.1925 -5.6868 32 1 3.1301 -0.7208 1.2493 33 1 1.6768 -1.7488 1.2492 34 1 1.8198 0.9436 2.4402 35 1 3.1119 -0.6939 3.6869 36 1 1.6589 -1.7221 3.6873 37 1 0.4026 0.0523 4.8788 38 1 1.8551 1.0811 4.8787 39 1 3.0730 -0.6398 6.1848 40 1 1.6200 -1.6681 6.1844 41 1 3.0358 1.5373 7.7528 42 1 -0.4264 -0.8997 7.7459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381702768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:03 Heat of formation + Delta-G solvation = 42.989541 kcal Electronic energy + Delta-G solvation = -19700.659984 eV Core-core repulsion = 16715.831884 eV Total energy + Delta-G solvation = -2984.828100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.98718 -39.32266 -37.35593 -35.58504 -34.28438 -31.91620 -31.51210 -29.58475 -27.92310 -27.42707 -25.71979 -23.81897 -23.22528 -22.92446 -22.28958 -19.42910 -18.86539 -18.33710 -17.00531 -16.85722 -16.40350 -16.12803 -15.81829 -15.65457 -15.28767 -15.17792 -14.75298 -14.38608 -14.09548 -13.67904 -13.44204 -13.32175 -12.88307 -12.75204 -12.65529 -12.47927 -12.27311 -12.22187 -12.07968 -11.80721 -11.70698 -11.34589 -11.29355 -11.16527 -10.93937 -10.77940 -10.69919 -10.41181 -9.24099 -8.21460 -6.22107 0.95914 1.36493 1.37869 1.48741 1.66365 1.95672 2.39742 3.13648 3.24801 3.67587 3.81017 3.86059 4.08013 4.12515 4.19516 4.24147 4.33148 4.35691 4.46599 4.53784 4.72882 4.77267 4.79620 4.87940 4.93883 5.04807 5.08682 5.12123 5.19015 5.22904 5.29631 5.37776 5.46089 5.53101 5.62963 5.76311 5.83192 6.02132 6.17135 6.42477 6.54515 6.85929 7.40535 7.77740 8.94880 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.049744 B = 0.002769 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.741803 B =10108.099271 C =10294.714479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.504 4.504 6 H 0.042 0.958 7 C -0.002 4.002 8 N -0.956 5.956 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.246 1.246 13 C 0.082 3.918 14 N -0.693 5.693 15 C 0.063 3.937 16 C -0.123 4.123 17 C 0.110 3.890 18 N -0.469 5.469 19 C 0.159 3.841 20 N -0.356 5.356 21 N -0.356 5.356 22 C 0.160 3.840 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.342 0.658 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.250 0.750 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -4.950 22.680 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.198 4.198 8 N -0.599 5.599 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.169 1.169 13 C -0.047 4.047 14 N -0.326 5.326 15 C -0.067 4.067 16 C -0.162 4.162 17 C -0.012 4.012 18 N -0.159 5.159 19 C -0.130 4.130 20 N -0.195 5.195 21 N -0.195 5.195 22 C -0.129 4.129 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.266 0.734 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.643 -4.547 23.722 24.427 hybrid contribution 1.535 -0.721 -2.144 2.734 sum 5.178 -5.267 21.578 22.807 Atomic orbital electron populations 1.21515 0.94856 1.00343 0.99944 1.20367 0.95894 0.95386 0.93398 1.21698 0.99832 0.96018 1.00654 1.19610 0.95711 0.95433 0.93444 1.21449 1.30022 1.12109 0.90606 0.93975 1.25972 0.97692 1.00347 0.95771 1.70072 1.48393 1.42917 0.98474 0.85765 0.79653 0.79856 0.77975 1.19635 1.21666 1.16943 1.21836 0.96438 0.97711 0.88754 1.60447 1.64101 1.06725 1.01296 1.21864 0.97809 0.98834 0.88200 1.21797 1.02094 0.99832 0.92448 1.22169 1.02143 0.96746 0.80156 1.46724 1.16650 1.27483 1.25052 1.27168 1.02510 0.91144 0.92173 1.74152 1.01333 1.22950 1.21024 1.74153 1.17510 1.06930 1.20864 1.27163 0.91191 1.02509 0.92073 0.91572 0.95707 0.94254 0.93588 0.94870 0.91536 0.96733 0.96907 0.92939 0.95206 0.91346 0.83815 0.93902 0.90146 0.91315 0.91580 0.86053 0.86049 0.73415 0.73516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.91 8.06 71.98 0.58 -3.33 16 2 C -0.05 -1.74 0.60 -52.18 -0.03 -1.77 16 3 C -0.12 -4.19 7.89 71.98 0.57 -3.62 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 5 C -0.50 -27.71 8.20 25.60 0.21 -27.50 16 6 H 0.04 2.56 5.92 -2.91 -0.02 2.54 16 7 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 8 N -0.96 -59.67 13.96 21.45 0.30 -59.37 16 9 Si 0.94 43.59 27.47 68.60 1.88 45.48 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 13 C 0.08 2.11 4.65 86.30 0.40 2.51 16 14 N -0.69 -13.59 5.71 -513.90 -2.94 -16.52 16 15 C 0.06 0.73 5.68 86.30 0.49 1.22 16 16 C -0.12 -1.04 5.80 30.59 0.18 -0.86 16 17 C 0.11 0.43 6.20 86.38 0.54 0.97 16 18 N -0.47 -5.04 2.75 -533.47 -1.47 -6.51 16 19 C 0.16 2.26 12.74 180.11 2.30 4.56 16 20 N -0.36 -8.56 12.21 -59.99 -0.73 -9.30 16 21 N -0.36 -8.62 12.21 -59.99 -0.73 -9.35 16 22 C 0.16 2.33 12.74 180.11 2.30 4.62 16 23 H 0.07 2.05 7.60 -2.38 -0.02 2.03 16 24 H 0.02 1.03 6.62 -2.39 -0.02 1.02 16 25 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.03 1.34 6.62 -2.39 -0.02 1.33 16 28 H 0.07 1.79 6.57 -2.38 -0.02 1.78 16 29 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 30 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.34 6.53 6.77 -89.70 -0.61 5.93 16 35 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.25 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.25 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -75.89 336.94 4.72 -71.17 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.33 Total: 7.35 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 8.08 Total: -22.96 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.57 Total: -101.04 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -75.89 4.72 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381702768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.162 kcal (2) G-P(sol) polarization free energy of solvation -75.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds