Wall clock time and date at job start Mon Mar 30 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 H 1.08999 * 109.47016 * 305.00399 * 3 2 1 5 5 C 1.50701 * 109.46923 * 185.00312 * 3 2 1 6 6 H 1.08001 * 120.00131 * 244.68726 * 5 3 2 7 7 C 1.37880 * 120.00043 * 64.69202 * 5 3 2 8 8 N 1.31512 * 119.99822 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47490 * 59.99557 * 9 7 5 11 11 H 1.48499 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46996 * 299.99483 * 9 7 5 13 13 N 1.46901 * 109.46983 * 65.00494 * 3 2 1 14 14 C 1.48561 * 110.99850 * 181.15875 * 13 3 2 15 15 C 1.54377 * 104.59475 * 200.96120 * 14 13 3 16 16 H 1.09006 * 118.15476 * 244.14843 * 15 14 13 17 17 C 1.54127 * 105.06675 * 23.81175 * 15 14 13 18 18 H 1.08992 * 121.76354 * 222.14881 * 17 15 14 19 19 C 1.52010 * 110.70705 * 65.64893 * 13 3 2 20 20 C 1.52994 * 118.13162 * 87.22625 * 15 14 13 21 21 H 1.09002 * 117.43990 * 15.93893 * 20 15 14 22 22 N 1.46896 * 117.44549 * 160.68546 * 20 15 14 23 23 C 1.46898 * 111.00140 * 3.83624 * 22 20 15 24 24 C 1.53002 * 109.47346 * 169.99971 * 23 22 20 25 25 C 1.46906 * 111.00179 * 239.88239 * 22 20 15 26 26 C 1.52998 * 109.46908 * 288.39120 * 25 22 20 27 27 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47058 * 299.99379 * 1 2 3 29 29 H 1.09003 * 109.47786 * 59.99894 * 1 2 3 30 30 H 1.08999 * 109.46553 * 240.00511 * 2 1 3 31 31 H 1.08991 * 109.47363 * 120.00037 * 2 1 3 32 32 H 0.97003 * 120.00261 * 180.02562 * 8 7 5 33 33 H 1.09003 * 110.41376 * 82.17921 * 14 13 3 34 34 H 1.09005 * 110.41359 * 319.73786 * 14 13 3 35 35 H 1.08998 * 111.92726 * 40.55701 * 19 13 3 36 36 H 1.09002 * 110.49044 * 276.99991 * 19 13 3 37 37 H 1.09005 * 109.47002 * 49.99463 * 23 22 20 38 38 H 1.09004 * 109.47244 * 290.00320 * 23 22 20 39 39 H 1.08996 * 109.46867 * 60.00237 * 24 23 22 40 40 H 1.08997 * 109.46719 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47108 * 299.99740 * 24 23 22 42 42 H 1.09004 * 109.46876 * 48.39152 * 25 22 20 43 43 H 1.09000 * 109.46892 * 168.39176 * 25 22 20 44 44 H 1.08995 * 109.47020 * 65.21083 * 26 25 22 45 45 H 1.09004 * 109.46820 * 185.20164 * 26 25 22 46 46 H 1.09000 * 109.47162 * 305.20000 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1501 1.8201 0.6856 7 6 4.1396 0.9663 -1.2708 8 7 3.3990 0.5083 -2.2564 9 14 6.0012 0.9679 -1.4241 10 1 6.5878 0.1382 -0.3412 11 1 6.3898 0.4077 -2.7433 12 1 6.5061 2.3598 -1.3099 13 7 1.6514 2.0992 1.2553 14 6 2.1065 3.5132 1.2794 15 6 2.1278 3.8895 2.7765 16 1 1.4447 4.6657 3.1215 17 6 2.2778 2.5501 3.5242 18 1 1.7066 2.3292 4.4258 19 6 2.3541 1.4546 2.4391 20 6 3.3971 3.5919 3.5771 21 1 4.3071 3.3805 3.0156 22 7 3.5869 4.3180 4.8399 23 6 2.4236 5.1627 5.1415 24 6 2.5428 5.7048 6.5673 25 6 4.8215 5.1137 4.8092 26 6 6.0316 4.1804 4.8823 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8194 0.1717 -3.0631 33 1 1.4049 4.1477 0.7379 34 1 3.1055 3.5984 0.8518 35 1 3.3931 1.2140 2.2140 36 1 1.8176 0.5622 2.7615 37 1 1.5123 4.5713 5.0526 38 1 2.3866 5.9948 4.4383 39 1 3.4540 6.2963 6.6560 40 1 1.6793 6.3312 6.7911 41 1 2.5796 4.8728 7.2704 42 1 4.8607 5.6879 3.8835 43 1 4.8359 5.7948 5.6601 44 1 6.0684 3.5623 3.9853 45 1 6.9438 4.7731 4.9527 46 1 5.9450 3.5412 5.7609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384363913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:52 Heat of formation + Delta-G solvation = 39.222581 kcal Electronic energy + Delta-G solvation = -21648.352925 eV Core-core repulsion = 18766.901821 eV Total energy + Delta-G solvation = -2881.451104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80404 -37.17878 -34.65341 -31.97105 -31.83294 -30.79866 -28.39216 -27.55686 -26.36423 -23.81949 -23.13757 -22.44075 -21.11264 -19.79787 -19.14825 -18.64850 -16.67864 -16.13612 -15.58465 -14.96846 -14.64851 -14.24214 -13.84149 -13.52410 -13.22825 -12.87330 -12.57809 -12.45514 -12.21846 -12.19458 -11.95560 -11.71354 -11.50350 -11.46261 -11.18273 -11.10328 -10.92226 -10.70439 -10.67352 -10.60080 -10.34864 -10.14358 -9.98249 -9.69194 -9.45361 -9.28370 -9.07997 -8.37036 -7.97821 -7.20515 -6.01013 -4.12472 3.26481 3.32128 3.34281 3.72495 4.19569 4.38517 4.83237 4.94845 5.12810 5.14611 5.20525 5.24777 5.33065 5.40920 5.48924 5.57339 5.60944 5.66105 5.74399 5.80997 5.91056 5.96082 6.03267 6.11635 6.22049 6.28295 6.32867 6.37875 6.47487 6.61715 6.67998 6.72293 6.80856 6.85879 7.04780 7.14900 7.17156 7.24763 7.28720 7.55809 7.71573 7.92251 8.12322 8.18992 8.39852 8.97433 9.54108 11.00447 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006048 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.942406 B = 4628.660656 C = 5739.104848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.200 3.800 4 H 0.041 0.959 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.504 5.504 14 C 0.068 3.932 15 C -0.191 4.191 16 H 0.107 0.893 17 C -0.146 4.146 18 H 0.103 0.897 19 C 0.065 3.935 20 C 0.041 3.959 21 H 0.113 0.887 22 N -0.506 5.506 23 C 0.046 3.954 24 C -0.149 4.149 25 C 0.048 3.952 26 C -0.148 4.148 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 7.682 12.872 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.093 3.907 4 H 0.059 0.941 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.228 5.228 14 C -0.061 4.061 15 C -0.211 4.211 16 H 0.125 0.875 17 C -0.165 4.165 18 H 0.121 0.879 19 C -0.062 4.062 20 C -0.068 4.068 21 H 0.131 0.869 22 N -0.228 5.228 23 C -0.082 4.082 24 C -0.206 4.206 25 C -0.079 4.079 26 C -0.206 4.206 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.841 7.211 13.079 14.959 hybrid contribution 1.812 0.599 -0.939 2.127 sum 0.972 7.810 12.140 14.468 Atomic orbital electron populations 1.21718 0.98770 0.98463 1.00689 1.21489 0.92345 0.99063 1.01347 1.19399 0.93240 0.91356 0.86724 0.94081 1.21653 0.92680 1.42243 1.01642 0.92500 1.24905 0.97652 0.94995 0.95737 1.69899 1.34910 1.41356 1.06045 0.86786 0.86384 0.78301 0.77329 1.20258 1.21227 1.20415 1.66845 1.51150 1.00477 1.04359 1.22417 1.00109 0.91871 0.91670 1.24125 1.01434 1.00160 0.95429 0.87548 1.23563 1.01738 0.91493 0.99744 0.87870 1.23102 0.99133 0.94829 0.89165 1.22859 0.93653 1.00041 0.90256 0.86947 1.61937 1.02388 1.27723 1.30739 1.22156 0.94224 0.95549 0.96222 1.21841 1.01264 1.00916 0.96625 1.22132 0.89889 0.95393 1.00531 1.21783 0.96221 0.99761 1.02793 0.95579 0.93259 0.94184 0.89950 0.94899 0.92836 0.91648 0.92464 0.91708 0.91208 0.90391 0.94652 0.92799 0.92456 0.91937 0.94632 0.90759 0.92455 0.92624 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.10 -2.45 5.24 -26.73 -0.14 -2.59 16 3 C 0.20 4.89 1.73 -68.86 -0.12 4.77 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.54 -14.19 6.48 -34.44 -0.22 -14.41 16 6 H 0.06 1.48 5.70 -52.49 -0.30 1.18 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 8 N -0.88 -24.74 11.66 55.43 0.65 -24.09 16 9 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.50 -10.69 4.90 -220.27 -1.08 -11.77 16 14 C 0.07 1.34 6.12 -2.18 -0.01 1.32 16 15 C -0.19 -3.13 5.91 -89.31 -0.53 -3.65 16 16 H 0.11 1.60 6.13 -51.93 -0.32 1.28 16 17 C -0.15 -2.43 6.43 -89.30 -0.57 -3.00 16 18 H 0.10 1.64 8.04 -51.93 -0.42 1.22 16 19 C 0.07 1.28 5.25 -0.19 0.00 1.28 16 20 C 0.04 0.65 5.33 -67.72 -0.36 0.29 16 21 H 0.11 1.94 6.80 -51.93 -0.35 1.59 16 22 N -0.51 -6.75 4.66 -226.65 -1.06 -7.81 16 23 C 0.05 0.54 4.32 -3.82 -0.02 0.52 16 24 C -0.15 -1.42 9.88 37.16 0.37 -1.06 16 25 C 0.05 0.57 5.53 -3.82 -0.02 0.55 16 26 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 2.17 6.35 -51.93 -0.33 1.84 16 31 H 0.03 0.76 6.89 -51.93 -0.36 0.40 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 6.42 -51.93 -0.33 0.91 16 35 H 0.06 1.40 5.94 -51.93 -0.31 1.09 16 36 H 0.07 1.34 7.65 -51.93 -0.40 0.94 16 37 H 0.08 0.96 6.49 -51.93 -0.34 0.63 16 38 H 0.04 0.42 7.74 -51.93 -0.40 0.02 16 39 H 0.05 0.49 6.29 -51.93 -0.33 0.16 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.44 8.06 -51.93 -0.42 0.03 16 43 H 0.07 0.76 5.95 -51.93 -0.31 0.46 16 44 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -26.69 341.86 -10.54 -37.23 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.19 Total: 3.45 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.99 Total: -18.04 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.49 Total: -43.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.69 -10.54 -37.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384363913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.448 kcal (2) G-P(sol) polarization free energy of solvation -26.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds