Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 H 1.08999 * 109.47016 * 305.00399 * 3 2 1 5 5 C 1.50701 * 109.46923 * 185.00312 * 3 2 1 6 6 H 1.08001 * 120.00131 * 244.68726 * 5 3 2 7 7 C 1.37880 * 120.00043 * 64.69202 * 5 3 2 8 8 N 1.31512 * 119.99822 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47490 * 59.99557 * 9 7 5 11 11 H 1.48499 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46996 * 299.99483 * 9 7 5 13 13 N 1.46901 * 109.46983 * 65.00494 * 3 2 1 14 14 C 1.48561 * 110.99850 * 181.15875 * 13 3 2 15 15 C 1.54377 * 104.59475 * 200.96120 * 14 13 3 16 16 H 1.09006 * 118.15476 * 244.14843 * 15 14 13 17 17 C 1.54127 * 105.06675 * 23.81175 * 15 14 13 18 18 H 1.08992 * 121.76354 * 222.14881 * 17 15 14 19 19 C 1.52010 * 110.70705 * 65.64893 * 13 3 2 20 20 C 1.52994 * 118.13162 * 87.22625 * 15 14 13 21 21 H 1.09002 * 117.43990 * 15.93893 * 20 15 14 22 22 N 1.46896 * 117.44549 * 160.68546 * 20 15 14 23 23 C 1.46898 * 111.00140 * 3.83624 * 22 20 15 24 24 C 1.53002 * 109.47346 * 169.99971 * 23 22 20 25 25 C 1.46906 * 111.00179 * 239.88239 * 22 20 15 26 26 C 1.52998 * 109.46908 * 288.39120 * 25 22 20 27 27 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47058 * 299.99379 * 1 2 3 29 29 H 1.09003 * 109.47786 * 59.99894 * 1 2 3 30 30 H 1.08999 * 109.46553 * 240.00511 * 2 1 3 31 31 H 1.08991 * 109.47363 * 120.00037 * 2 1 3 32 32 H 0.97003 * 120.00261 * 180.02562 * 8 7 5 33 33 H 1.09003 * 110.41376 * 82.17921 * 14 13 3 34 34 H 1.09005 * 110.41359 * 319.73786 * 14 13 3 35 35 H 1.08998 * 111.92726 * 40.55701 * 19 13 3 36 36 H 1.09002 * 110.49044 * 276.99991 * 19 13 3 37 37 H 1.09005 * 109.47002 * 49.99463 * 23 22 20 38 38 H 1.09004 * 109.47244 * 290.00320 * 23 22 20 39 39 H 1.08996 * 109.46867 * 60.00237 * 24 23 22 40 40 H 1.08997 * 109.46719 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47108 * 299.99740 * 24 23 22 42 42 H 1.09004 * 109.46876 * 48.39152 * 25 22 20 43 43 H 1.09000 * 109.46892 * 168.39176 * 25 22 20 44 44 H 1.08995 * 109.47020 * 65.21083 * 26 25 22 45 45 H 1.09004 * 109.46820 * 185.20164 * 26 25 22 46 46 H 1.09000 * 109.47162 * 305.20000 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1501 1.8201 0.6856 7 6 4.1396 0.9663 -1.2708 8 7 3.3990 0.5083 -2.2564 9 14 6.0012 0.9679 -1.4241 10 1 6.5878 0.1382 -0.3412 11 1 6.3898 0.4077 -2.7433 12 1 6.5061 2.3598 -1.3099 13 7 1.6514 2.0992 1.2553 14 6 2.1065 3.5132 1.2794 15 6 2.1278 3.8895 2.7765 16 1 1.4447 4.6657 3.1215 17 6 2.2778 2.5501 3.5242 18 1 1.7066 2.3292 4.4258 19 6 2.3541 1.4546 2.4391 20 6 3.3971 3.5919 3.5771 21 1 4.3071 3.3805 3.0156 22 7 3.5869 4.3180 4.8399 23 6 2.4236 5.1627 5.1415 24 6 2.5428 5.7048 6.5673 25 6 4.8215 5.1137 4.8092 26 6 6.0316 4.1804 4.8823 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8194 0.1717 -3.0631 33 1 1.4049 4.1477 0.7379 34 1 3.1055 3.5984 0.8518 35 1 3.3931 1.2140 2.2140 36 1 1.8176 0.5622 2.7615 37 1 1.5123 4.5713 5.0526 38 1 2.3866 5.9948 4.4383 39 1 3.4540 6.2963 6.6560 40 1 1.6793 6.3312 6.7911 41 1 2.5796 4.8728 7.2704 42 1 4.8607 5.6879 3.8835 43 1 4.8359 5.7948 5.6601 44 1 6.0684 3.5623 3.9853 45 1 6.9438 4.7731 4.9527 46 1 5.9450 3.5412 5.7609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384363913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = 23.690541 kcal Electronic energy + Delta-G solvation = -21649.026445 eV Core-core repulsion = 18766.901821 eV Total energy + Delta-G solvation = -2882.124624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18170 -38.55859 -36.26525 -33.89165 -32.76170 -32.40309 -29.56686 -29.12987 -28.16722 -25.54742 -24.05962 -23.92678 -22.55138 -21.25435 -20.80921 -20.05418 -18.44554 -17.56576 -17.06426 -16.46861 -15.81201 -15.57550 -15.14548 -15.13155 -14.76193 -14.51214 -14.17042 -13.86452 -13.61514 -13.37883 -13.21532 -13.14281 -12.84830 -12.79193 -12.54071 -12.50933 -12.48558 -12.36535 -12.08084 -11.98260 -11.87113 -11.62201 -11.56279 -11.41729 -11.16665 -11.03919 -10.70709 -10.43225 -9.11216 -9.02041 -8.06526 -6.25557 1.36002 1.37105 1.43859 2.38617 2.58119 2.88900 3.15121 3.46548 3.78993 3.85887 4.02989 4.14120 4.25441 4.27118 4.32176 4.44720 4.52281 4.56782 4.60675 4.68534 4.71563 4.72982 4.83065 4.88627 4.91449 4.98364 5.03741 5.08796 5.10321 5.14215 5.20078 5.27290 5.33063 5.36405 5.38276 5.41258 5.45146 5.59433 5.74570 5.94908 6.09014 6.15432 6.17879 6.32225 6.42010 6.94291 7.43870 8.91890 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006048 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.942406 B = 4628.660656 C = 5739.104848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.207 3.793 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.504 5.504 14 C 0.066 3.934 15 C -0.181 4.181 16 H 0.129 0.871 17 C -0.143 4.143 18 H 0.121 0.879 19 C 0.067 3.933 20 C 0.055 3.945 21 H 0.093 0.907 22 N -0.507 5.507 23 C 0.043 3.957 24 C -0.142 4.142 25 C 0.047 3.953 26 C -0.145 4.145 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 8.711 15.126 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C 0.099 3.901 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.227 5.227 14 C -0.063 4.063 15 C -0.202 4.202 16 H 0.146 0.854 17 C -0.162 4.162 18 H 0.139 0.861 19 C -0.060 4.060 20 C -0.055 4.055 21 H 0.110 0.890 22 N -0.229 5.229 23 C -0.084 4.084 24 C -0.200 4.200 25 C -0.080 4.080 26 C -0.203 4.203 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.789 8.250 15.352 17.446 hybrid contribution 1.794 0.313 -1.617 2.436 sum 1.005 8.563 13.735 16.217 Atomic orbital electron populations 1.21579 0.96216 0.99941 1.00682 1.21338 0.94590 0.97978 0.99812 1.19156 0.92146 0.91693 0.87082 0.97857 1.21879 0.93752 1.41511 1.01421 0.92954 1.25588 1.01547 0.94970 0.95613 1.70023 1.36366 1.42287 1.06424 0.85870 0.81748 0.78301 0.77316 1.19803 1.20909 1.20098 1.66791 1.51218 1.01232 1.03507 1.22390 0.98489 0.91184 0.94219 1.24038 1.02755 1.00528 0.92856 0.85365 1.23450 1.02948 0.90394 0.99448 0.86098 1.23024 0.97463 0.96093 0.89460 1.22677 0.92339 0.99547 0.90946 0.88954 1.61993 1.03680 1.28608 1.28614 1.22249 0.93233 0.95195 0.97741 1.21795 1.02414 1.01016 0.94753 1.22226 0.89182 0.95464 1.01177 1.21770 0.97155 0.99737 1.01648 0.93350 0.92414 0.94922 0.92935 0.94808 0.92962 0.91444 0.95205 0.94174 0.90718 0.90798 0.94575 0.92077 0.90859 0.92239 0.95316 0.88463 0.94628 0.90732 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.80 71.98 0.71 -4.44 16 2 C -0.10 -4.74 5.24 30.59 0.16 -4.58 16 3 C 0.21 10.45 1.73 44.17 0.08 10.52 16 4 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 5 C -0.55 -29.43 6.48 25.60 0.17 -29.27 16 6 H 0.05 2.82 5.70 -2.91 -0.02 2.80 16 7 C 0.02 1.26 5.30 84.66 0.45 1.71 16 8 N -0.91 -52.49 11.66 21.45 0.25 -52.24 16 9 Si 0.94 43.63 29.54 68.60 2.03 45.66 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 N -0.50 -21.59 4.90 -850.79 -4.17 -25.75 16 14 C 0.07 2.62 6.12 86.45 0.53 3.15 16 15 C -0.18 -5.71 5.91 -9.95 -0.06 -5.77 16 16 H 0.13 3.53 6.13 -2.38 -0.01 3.52 16 17 C -0.14 -4.57 6.43 -9.94 -0.06 -4.64 16 18 H 0.12 3.51 8.04 -2.39 -0.02 3.49 16 19 C 0.07 2.62 5.25 85.76 0.45 3.07 16 20 C 0.05 1.67 5.33 44.91 0.24 1.90 16 21 H 0.09 3.22 6.80 -2.39 -0.02 3.21 16 22 N -0.51 -12.43 4.66 -870.97 -4.06 -16.49 16 23 C 0.04 0.89 4.32 86.30 0.37 1.26 16 24 C -0.14 -2.23 9.88 71.98 0.71 -1.52 16 25 C 0.05 1.00 5.53 86.30 0.48 1.48 16 26 C -0.15 -3.14 9.91 71.98 0.71 -2.43 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 2.84 6.35 -2.39 -0.02 2.82 16 31 H 0.03 1.57 6.89 -2.39 -0.02 1.56 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.03 1.34 6.42 -2.38 -0.02 1.33 16 35 H 0.04 1.77 5.94 -2.39 -0.01 1.76 16 36 H 0.07 2.82 7.65 -2.39 -0.02 2.80 16 37 H 0.07 1.60 6.49 -2.38 -0.02 1.58 16 38 H 0.04 0.75 7.74 -2.38 -0.02 0.73 16 39 H 0.06 0.87 6.29 -2.39 -0.02 0.86 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.03 0.67 8.06 -2.39 -0.02 0.65 16 43 H 0.10 1.68 5.95 -2.39 -0.01 1.66 16 44 H 0.03 0.91 6.93 -2.39 -0.02 0.89 16 45 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -58.22 341.86 -0.09 -58.31 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.93 Total: 20.06 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.93 Total: -29.54 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -7.98 Total: -94.49 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -58.22 -0.09 -58.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384363913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.000 kcal (2) G-P(sol) polarization free energy of solvation -58.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds