Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47369 * 2 1 4 4 N 1.46906 * 109.47163 * 240.00214 * 2 1 3 5 5 C 1.46895 * 110.99921 * 84.99907 * 4 2 1 6 6 C 1.52995 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47096 * 300.00388 * 6 5 4 8 8 C 1.53001 * 109.47003 * 59.99876 * 6 5 4 9 9 C 1.52997 * 109.47540 * 179.97438 * 6 5 4 10 10 C 1.50705 * 109.47374 * 180.02562 * 9 6 5 11 11 H 1.08001 * 119.99718 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00138 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99690 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00093 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46838 * 89.99650 * 14 12 10 16 16 H 1.48493 * 109.47170 * 209.99555 * 14 12 10 17 17 H 1.48497 * 109.47262 * 330.00156 * 14 12 10 18 18 C 1.50699 * 109.47203 * 120.00090 * 2 1 3 19 19 N 1.33251 * 125.52327 * 75.32016 * 18 2 1 20 20 C 1.30831 * 109.82578 * 180.12916 * 19 18 2 21 21 N 1.34438 * 108.07816 * 359.59820 * 20 19 18 22 22 C 1.46494 * 126.82245 * 180.20890 * 21 20 19 23 23 N 1.30712 * 125.53061 * 254.99560 * 18 2 1 24 24 H 1.09000 * 109.46876 * 59.99166 * 1 2 3 25 25 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46863 * 299.99731 * 1 2 3 27 27 H 1.00898 * 110.99742 * 208.95235 * 4 2 1 28 28 H 1.09003 * 109.47768 * 300.00328 * 5 4 2 29 29 H 1.09003 * 109.47016 * 60.00032 * 5 4 2 30 30 H 1.08993 * 109.47556 * 59.99608 * 7 6 5 31 31 H 1.09001 * 109.47146 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.47134 * 299.99500 * 7 6 5 33 33 H 1.08998 * 109.47009 * 60.00490 * 8 6 5 34 34 H 1.09001 * 109.47069 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47249 * 300.00525 * 8 6 5 36 36 H 1.08998 * 109.47317 * 300.00027 * 9 6 5 37 37 H 1.09007 * 109.46949 * 60.00341 * 9 6 5 38 38 H 0.97003 * 119.99083 * 180.02562 * 13 12 10 39 39 H 1.08002 * 125.96273 * 179.86887 * 20 19 18 40 40 H 1.09000 * 109.47284 * 90.02473 * 22 21 20 41 41 H 1.09003 * 109.47324 * 210.02914 * 22 21 20 42 42 H 1.09004 * 109.47280 * 330.02502 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 3.9920 -1.0862 -3.2863 8 6 1.6451 -1.6887 -3.8953 9 6 2.6598 0.4199 -4.7697 10 6 3.1640 -0.3246 -5.9791 11 1 3.4130 -1.3728 -5.9029 12 6 3.3076 0.3323 -7.1828 13 7 3.0039 1.6086 -7.2756 14 14 3.9333 -0.5903 -8.6816 15 1 2.7839 -1.1726 -9.4198 16 1 4.6679 0.3469 -9.5687 17 1 4.8454 -1.6788 -8.2476 18 6 2.0323 -0.7104 1.2304 19 7 2.0313 -2.0297 1.4174 20 6 2.5332 -2.3118 2.5922 21 7 2.8792 -1.1566 3.1863 22 6 3.4838 -0.9973 4.5112 23 7 2.5452 -0.1328 2.2849 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0462 -2.1181 30 1 3.9455 -1.7652 -2.4349 31 1 4.3570 -1.6249 -4.1607 32 1 4.6689 -0.2628 -3.0577 33 1 0.6498 -1.2947 -4.1006 34 1 2.0105 -2.2274 -4.7696 35 1 1.5985 -2.3677 -3.0439 36 1 1.6643 0.8136 -4.9749 37 1 3.3363 1.2436 -4.5415 38 1 3.1046 2.0706 -8.1226 39 1 2.6530 -3.3006 3.0099 40 1 4.5697 -1.0220 4.4204 41 1 3.1765 -0.0428 4.9384 42 1 3.1549 -1.8087 5.1606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391941436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 77.033777 kcal Electronic energy + Delta-G solvation = -20370.460279 eV Core-core repulsion = 17387.108448 eV Total energy + Delta-G solvation = -2983.351831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.21044 -37.83690 -35.52971 -33.73198 -32.29415 -31.33072 -29.56373 -27.37518 -26.80069 -26.23052 -25.29148 -23.36411 -22.35209 -21.78066 -19.93069 -17.92410 -17.08529 -16.18530 -16.14243 -15.59213 -15.41372 -14.58799 -14.13410 -14.05368 -13.62163 -13.55799 -13.10829 -12.99936 -12.56693 -12.06399 -11.97471 -11.93158 -11.90121 -11.64503 -11.18055 -10.87453 -10.75655 -10.68457 -10.40870 -10.18256 -10.07243 -10.04174 -9.92643 -9.64603 -9.59036 -8.93879 -8.75546 -8.25692 -8.01016 -5.90498 -3.90075 1.44866 2.11196 2.82033 3.37754 3.43993 3.47115 3.96295 4.14937 4.47253 4.55391 4.60708 4.73000 4.98336 5.08946 5.40003 5.45216 5.45987 5.76448 5.84035 5.87266 5.97426 6.08181 6.12882 6.25100 6.35112 6.40484 6.43358 6.61390 6.63578 6.78801 6.89332 6.93282 7.29684 7.31328 7.36625 7.47023 7.73921 7.78520 7.93583 8.03334 8.10511 8.55387 9.15406 9.72362 11.21265 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039226 B = 0.003520 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.649986 B = 7952.217613 C = 8127.788407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.178 3.822 3 H 0.062 0.938 4 N -0.666 5.666 5 C 0.068 3.932 6 C -0.057 4.057 7 C -0.129 4.129 8 C -0.116 4.116 9 C 0.034 3.966 10 C -0.505 4.505 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.275 1.275 18 C 0.229 3.771 19 N -0.517 5.517 20 C 0.247 3.753 21 N -0.390 5.390 22 C 0.098 3.902 23 N -0.319 5.319 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.343 0.657 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.258 0.742 39 H 0.218 0.782 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -6.083 23.265 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 H 0.079 0.921 4 N -0.300 5.300 5 C -0.060 4.060 6 C -0.057 4.057 7 C -0.186 4.186 8 C -0.173 4.173 9 C -0.004 4.004 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.054 4.054 19 N -0.244 5.244 20 C -0.050 4.050 21 N -0.181 5.181 22 C -0.044 4.044 23 N -0.147 5.147 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.163 0.837 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.377 -5.645 22.921 23.646 hybrid contribution 1.338 -0.045 -0.272 1.366 sum -0.039 -5.690 22.649 23.353 Atomic orbital electron populations 1.21731 0.92793 1.03106 1.01397 1.19773 0.96298 0.94111 0.83255 0.92052 1.60632 1.34030 1.32811 1.02548 1.22228 1.00408 0.93144 0.90254 1.20612 0.94170 0.96725 0.94212 1.21769 0.96937 0.99602 1.00332 1.21595 0.98107 0.97506 1.00098 1.19126 0.96966 0.93549 0.90722 1.21254 1.42648 0.96290 0.94119 0.92277 1.25016 0.95962 0.94827 0.98843 1.69976 1.49440 1.08959 1.25470 0.86667 0.78928 0.79639 0.83205 1.20793 1.21461 1.19962 1.24393 0.96572 0.88834 0.95600 1.70479 1.22946 1.15025 1.15906 1.26162 0.95441 0.93422 0.90020 1.50420 1.47101 1.04957 1.15646 1.21912 0.98662 1.04763 0.79088 1.78047 1.22628 1.11869 1.02185 0.91307 0.91218 0.93136 0.83710 0.91196 0.95820 0.94797 0.91725 0.94250 0.94157 0.92833 0.93602 0.96615 0.96951 0.93230 0.76577 0.90310 0.89154 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.40 37.16 0.35 -1.40 16 2 C 0.18 2.61 3.16 -68.86 -0.22 2.39 16 3 H 0.06 0.91 7.80 -51.93 -0.40 0.50 16 4 N -0.67 -10.76 5.50 -107.95 -0.59 -11.35 16 5 C 0.07 1.23 4.44 -3.83 -0.02 1.21 16 6 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 7 C -0.13 -2.53 7.89 37.16 0.29 -2.24 16 8 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 9 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 10 C -0.50 -14.05 7.65 -34.44 -0.26 -14.32 16 11 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 14 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 18 C 0.23 3.33 6.63 -156.85 -1.04 2.29 16 19 N -0.52 -7.15 11.18 -11.97 -0.13 -7.28 16 20 C 0.25 2.40 12.66 -90.65 -1.15 1.25 16 21 N -0.39 -3.89 4.04 -69.44 -0.28 -4.17 16 22 C 0.10 0.46 11.53 59.84 0.69 1.15 16 23 N -0.32 -4.43 12.70 32.42 0.41 -4.02 16 24 H 0.07 0.90 7.45 -51.93 -0.39 0.52 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.34 5.70 6.39 -39.29 -0.25 5.45 16 28 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 29 H 0.02 0.43 8.06 -51.93 -0.42 0.02 16 30 H 0.03 0.59 6.57 -51.93 -0.34 0.24 16 31 H 0.06 1.36 6.62 -51.93 -0.34 1.02 16 32 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 35 H 0.04 0.85 7.60 -51.93 -0.39 0.46 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.61 338.96 -8.06 -41.67 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.93 Total: 0.38 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.36 Total: -10.75 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.14 Total: -53.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.61 -8.06 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391941436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.707 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds