Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47369 * 2 1 4 4 N 1.46906 * 109.47163 * 240.00214 * 2 1 3 5 5 C 1.46895 * 110.99921 * 84.99907 * 4 2 1 6 6 C 1.52995 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47096 * 300.00388 * 6 5 4 8 8 C 1.53001 * 109.47003 * 59.99876 * 6 5 4 9 9 C 1.52997 * 109.47540 * 179.97438 * 6 5 4 10 10 C 1.50705 * 109.47374 * 180.02562 * 9 6 5 11 11 H 1.08001 * 119.99718 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00138 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99690 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00093 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46838 * 89.99650 * 14 12 10 16 16 H 1.48493 * 109.47170 * 209.99555 * 14 12 10 17 17 H 1.48497 * 109.47262 * 330.00156 * 14 12 10 18 18 C 1.50699 * 109.47203 * 120.00090 * 2 1 3 19 19 N 1.33251 * 125.52327 * 75.32016 * 18 2 1 20 20 C 1.30831 * 109.82578 * 180.12916 * 19 18 2 21 21 N 1.34438 * 108.07816 * 359.59820 * 20 19 18 22 22 C 1.46494 * 126.82245 * 180.20890 * 21 20 19 23 23 N 1.30712 * 125.53061 * 254.99560 * 18 2 1 24 24 H 1.09000 * 109.46876 * 59.99166 * 1 2 3 25 25 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46863 * 299.99731 * 1 2 3 27 27 H 1.00898 * 110.99742 * 208.95235 * 4 2 1 28 28 H 1.09003 * 109.47768 * 300.00328 * 5 4 2 29 29 H 1.09003 * 109.47016 * 60.00032 * 5 4 2 30 30 H 1.08993 * 109.47556 * 59.99608 * 7 6 5 31 31 H 1.09001 * 109.47146 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.47134 * 299.99500 * 7 6 5 33 33 H 1.08998 * 109.47009 * 60.00490 * 8 6 5 34 34 H 1.09001 * 109.47069 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47249 * 300.00525 * 8 6 5 36 36 H 1.08998 * 109.47317 * 300.00027 * 9 6 5 37 37 H 1.09007 * 109.46949 * 60.00341 * 9 6 5 38 38 H 0.97003 * 119.99083 * 180.02562 * 13 12 10 39 39 H 1.08002 * 125.96273 * 179.86887 * 20 19 18 40 40 H 1.09000 * 109.47284 * 90.02473 * 22 21 20 41 41 H 1.09003 * 109.47324 * 210.02914 * 22 21 20 42 42 H 1.09004 * 109.47280 * 330.02502 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 3.9920 -1.0862 -3.2863 8 6 1.6451 -1.6887 -3.8953 9 6 2.6598 0.4199 -4.7697 10 6 3.1640 -0.3246 -5.9791 11 1 3.4130 -1.3728 -5.9029 12 6 3.3076 0.3323 -7.1828 13 7 3.0039 1.6086 -7.2756 14 14 3.9333 -0.5903 -8.6816 15 1 2.7839 -1.1726 -9.4198 16 1 4.6679 0.3469 -9.5687 17 1 4.8454 -1.6788 -8.2476 18 6 2.0323 -0.7104 1.2304 19 7 2.0313 -2.0297 1.4174 20 6 2.5332 -2.3118 2.5922 21 7 2.8792 -1.1566 3.1863 22 6 3.4838 -0.9973 4.5112 23 7 2.5452 -0.1328 2.2849 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0462 -2.1181 30 1 3.9455 -1.7652 -2.4349 31 1 4.3570 -1.6249 -4.1607 32 1 4.6689 -0.2628 -3.0577 33 1 0.6498 -1.2947 -4.1006 34 1 2.0105 -2.2274 -4.7696 35 1 1.5985 -2.3677 -3.0439 36 1 1.6643 0.8136 -4.9749 37 1 3.3363 1.2436 -4.5415 38 1 3.1046 2.0706 -8.1226 39 1 2.6530 -3.3006 3.0099 40 1 4.5697 -1.0220 4.4204 41 1 3.1765 -0.0428 4.9384 42 1 3.1549 -1.8087 5.1606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391941436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 55.621238 kcal Electronic energy + Delta-G solvation = -20371.388797 eV Core-core repulsion = 17387.108448 eV Total energy + Delta-G solvation = -2984.280349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05667 -39.35677 -36.87296 -34.79495 -34.14990 -32.32069 -30.84056 -28.79875 -28.07727 -27.83700 -26.77514 -24.91042 -23.57234 -22.82528 -20.97167 -19.55136 -18.30797 -17.93027 -16.93443 -16.80746 -16.50112 -16.39089 -15.57017 -15.22403 -14.83619 -14.67504 -14.35051 -14.07305 -13.87799 -13.81621 -13.52525 -13.23865 -12.87999 -12.84436 -12.67225 -12.61549 -12.53210 -12.23038 -12.20307 -12.04579 -11.86985 -11.35471 -10.97748 -10.83936 -10.81804 -10.74988 -10.48053 -10.41229 -9.34559 -8.11752 -6.18445 0.63571 1.42292 1.43043 1.47629 1.53594 1.91239 2.45722 3.06321 3.16996 3.22158 3.69369 3.98831 4.13640 4.16247 4.23316 4.37904 4.42820 4.43984 4.59416 4.70681 4.72711 4.75245 4.86488 4.93259 4.99196 5.10281 5.21505 5.24260 5.25271 5.35155 5.35810 5.53429 5.56509 5.60992 5.68785 5.89373 5.94921 5.97532 6.06003 6.38785 6.42522 6.96396 7.16104 7.48578 9.00705 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039226 B = 0.003520 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.649986 B = 7952.217613 C = 8127.788407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.177 3.823 3 H 0.055 0.945 4 N -0.660 5.660 5 C 0.081 3.919 6 C -0.053 4.053 7 C -0.121 4.121 8 C -0.105 4.105 9 C 0.041 3.959 10 C -0.513 4.513 11 H 0.066 0.934 12 C -0.005 4.005 13 N -0.938 5.938 14 Si 0.956 3.044 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.263 1.263 18 C 0.214 3.786 19 N -0.556 5.556 20 C 0.257 3.743 21 N -0.386 5.386 22 C 0.089 3.911 23 N -0.351 5.351 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.065 0.935 36 H -0.013 1.013 37 H -0.016 1.016 38 H 0.259 0.741 39 H 0.267 0.733 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -8.199 25.038 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.073 0.927 4 N -0.293 5.293 5 C -0.048 4.048 6 C -0.054 4.054 7 C -0.178 4.178 8 C -0.162 4.162 9 C 0.004 3.996 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.201 4.201 13 N -0.580 5.580 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.069 4.069 19 N -0.284 5.284 20 C -0.039 4.039 21 N -0.177 5.177 22 C -0.051 4.051 23 N -0.181 5.181 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.006 0.994 37 H 0.002 0.998 38 H 0.068 0.932 39 H 0.282 0.718 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.825 -7.774 24.737 25.943 hybrid contribution 1.191 0.612 -0.666 1.496 sum 0.366 -7.161 24.071 25.117 Atomic orbital electron populations 1.21649 0.91951 1.02731 1.01846 1.19730 0.96903 0.93747 0.83091 0.92673 1.60577 1.33793 1.32239 1.02689 1.21953 0.99868 0.92876 0.90138 1.20476 0.95495 0.96079 0.93321 1.21665 0.95773 0.99696 1.00669 1.21481 0.97349 0.97202 1.00196 1.18994 0.94350 0.93614 0.92672 1.21622 1.41981 0.96676 0.94865 0.91631 1.25916 0.96313 0.95658 1.02226 1.70118 1.50835 1.10680 1.26326 0.85572 0.78566 0.78477 0.79212 1.20080 1.21260 1.18722 1.24165 0.97617 0.89426 0.95660 1.70408 1.24885 1.14739 1.18336 1.27040 0.93181 0.94906 0.88779 1.50704 1.46325 1.04248 1.16434 1.22349 0.99246 1.06373 0.77181 1.77930 1.23283 1.13967 1.02891 0.91549 0.91886 0.91967 0.83891 0.91475 0.96487 0.92125 0.93223 0.94690 0.94754 0.94239 0.91648 0.99416 0.99807 0.93189 0.71755 0.89150 0.89355 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 9.40 71.98 0.68 -2.55 16 2 C 0.18 5.16 3.16 44.17 0.14 5.30 16 3 H 0.06 1.66 7.80 -2.39 -0.02 1.64 16 4 N -0.66 -20.94 5.50 -495.45 -2.73 -23.67 16 5 C 0.08 2.95 4.44 86.30 0.38 3.33 16 6 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 7 C -0.12 -4.67 7.89 71.98 0.57 -4.10 16 8 C -0.11 -4.18 8.06 71.98 0.58 -3.60 16 9 C 0.04 2.19 4.04 29.85 0.12 2.31 16 10 C -0.51 -28.99 7.65 25.60 0.20 -28.79 16 11 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 12 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 13 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 14 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 C 0.21 6.05 6.63 138.63 0.92 6.97 16 19 N -0.56 -14.40 11.18 -191.79 -2.14 -16.54 16 20 C 0.26 4.22 12.66 180.36 2.28 6.50 16 21 N -0.39 -6.75 4.04 -373.61 -1.51 -8.25 16 22 C 0.09 0.55 11.53 127.77 1.47 2.03 16 23 N -0.35 -9.40 12.70 -51.33 -0.65 -10.05 16 24 H 0.07 1.74 7.45 -2.39 -0.02 1.72 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.34 11.00 6.39 -89.70 -0.57 10.43 16 28 H 0.07 2.48 7.44 -2.39 -0.02 2.46 16 29 H 0.02 0.64 8.06 -2.39 -0.02 0.62 16 30 H 0.06 2.01 6.57 -2.39 -0.02 2.00 16 31 H 0.05 2.05 6.62 -2.39 -0.02 2.04 16 32 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 35 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.27 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.13 -0.19 8.14 -2.38 -0.02 -0.21 16 Total: -1.00 -74.20 338.96 3.48 -70.72 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.42 Total: 13.16 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 7.77 Total: -14.66 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -6.75 Total: -116.44 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.20 3.48 -70.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391941436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.341 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds