Wall clock time and date at job start Mon Mar 30 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46923 * 299.99733 * 6 5 4 8 8 C 1.52999 * 109.46998 * 59.99872 * 6 5 4 9 9 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 10 10 C 1.50701 * 109.46820 * 179.97438 * 9 6 5 11 11 H 1.08000 * 120.00070 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00019 * 179.97438 * 10 9 6 13 13 N 1.31515 * 120.00228 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00068 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46779 * 90.00373 * 14 12 10 16 16 H 1.48498 * 109.46986 * 210.00365 * 14 12 10 17 17 H 1.48503 * 109.47043 * 330.00844 * 14 12 10 18 18 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 19 19 N 1.33243 * 125.52772 * 285.02538 * 18 2 1 20 20 C 1.30826 * 109.83370 * 180.02562 * 19 18 2 21 21 N 1.34432 * 108.07463 * 0.02562 * 20 19 18 22 22 C 1.46504 * 126.82341 * 180.02562 * 21 20 19 23 23 N 1.30710 * 125.52888 * 104.72381 * 18 2 1 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 26 26 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 27 27 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 1.09002 * 109.47301 * 60.00027 * 7 6 5 31 31 H 1.09001 * 109.47017 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47249 * 300.00302 * 7 6 5 33 33 H 1.09001 * 109.46999 * 60.00126 * 8 6 5 34 34 H 1.09001 * 109.46478 * 179.97438 * 8 6 5 35 35 H 1.08993 * 109.47197 * 299.99817 * 8 6 5 36 36 H 1.08993 * 109.47740 * 299.99810 * 9 6 5 37 37 H 1.09005 * 109.47573 * 59.99976 * 9 6 5 38 38 H 0.97002 * 120.00555 * 179.97438 * 13 12 10 39 39 H 1.08006 * 125.96575 * 179.97438 * 20 19 18 40 40 H 1.08995 * 109.47891 * 89.96604 * 22 21 20 41 41 H 1.09000 * 109.46508 * 209.97484 * 22 21 20 42 42 H 1.09005 * 109.46780 * 329.96367 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 1.6472 -1.6891 3.8955 8 6 3.9935 -1.0850 3.2852 9 6 2.6622 0.4205 4.7691 10 6 3.1677 -0.3237 5.9781 11 1 3.4173 -1.3717 5.9017 12 6 3.3124 0.3336 7.1815 13 7 3.0089 1.6098 7.2744 14 14 3.9397 -0.5888 8.6800 15 1 5.4207 -0.4955 8.7345 16 1 3.3603 0.0110 9.9087 17 1 3.5366 -2.0151 8.5878 18 6 2.0323 -0.7104 -1.2304 19 7 2.0253 -2.0293 -1.4201 20 6 2.5321 -2.3118 -2.5926 21 7 2.8799 -1.1567 -3.1860 22 6 3.4854 -0.9975 -4.5105 23 7 2.5404 -0.1325 -2.2870 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6164 2.5525 30 1 1.6006 -2.3682 3.0441 31 1 2.0130 -2.2270 4.7701 32 1 0.6517 -1.2957 4.1014 33 1 4.6696 -0.2611 3.0563 34 1 4.3596 -1.6228 4.1597 35 1 3.9469 -1.7640 2.4338 36 1 3.3384 1.2440 4.5400 37 1 1.6669 0.8143 4.9752 38 1 3.1104 2.0722 8.1210 39 1 2.6512 -3.3005 -3.0106 40 1 2.7001 -0.8926 -5.2589 41 1 4.1153 -0.1079 -4.5173 42 1 4.0918 -1.8737 -4.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391941438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:42 Heat of formation + Delta-G solvation = 77.064986 kcal Electronic energy + Delta-G solvation = -20370.141395 eV Core-core repulsion = 17386.790917 eV Total energy + Delta-G solvation = -2983.350478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.21168 -37.83695 -35.52993 -33.73192 -32.29468 -31.33114 -29.56328 -27.37444 -26.80109 -26.23167 -25.29207 -23.36431 -22.35187 -21.78124 -19.93110 -17.92456 -17.08499 -16.18671 -16.14073 -15.59309 -15.41552 -14.59015 -14.10997 -14.06691 -13.65639 -13.52844 -13.11167 -12.99765 -12.56736 -12.06644 -11.97365 -11.93193 -11.90046 -11.64506 -11.18117 -10.87256 -10.75125 -10.69754 -10.40664 -10.18142 -10.07378 -10.03954 -9.92568 -9.64511 -9.59206 -8.93948 -8.75562 -8.25796 -8.01048 -5.90463 -3.90104 1.44822 2.11176 2.82120 3.37510 3.43934 3.47394 3.96314 4.15078 4.47415 4.55425 4.60660 4.72610 4.98291 5.08956 5.40037 5.45224 5.46017 5.76516 5.84074 5.87148 5.97415 6.08129 6.12878 6.25059 6.35058 6.40520 6.43320 6.61323 6.63568 6.78822 6.89330 6.93123 7.29525 7.31317 7.36834 7.47004 7.73908 7.78511 7.93559 8.03342 8.10456 8.55356 9.15385 9.72342 11.21276 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003520 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.153536 B = 7952.340534 C = 8127.854437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.178 3.822 3 H 0.062 0.938 4 N -0.666 5.666 5 C 0.068 3.932 6 C -0.057 4.057 7 C -0.116 4.116 8 C -0.129 4.129 9 C 0.034 3.966 10 C -0.505 4.505 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.229 3.771 19 N -0.517 5.517 20 C 0.247 3.753 21 N -0.390 5.390 22 C 0.098 3.902 23 N -0.319 5.319 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.343 0.657 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.012 0.988 37 H 0.016 0.984 38 H 0.258 0.742 39 H 0.218 0.782 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -6.100 -23.199 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 H 0.079 0.921 4 N -0.300 5.300 5 C -0.060 4.060 6 C -0.057 4.057 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.004 4.004 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.054 4.054 19 N -0.244 5.244 20 C -0.050 4.050 21 N -0.181 5.181 22 C -0.044 4.044 23 N -0.147 5.147 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.163 0.837 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.285 -5.664 -22.857 23.583 hybrid contribution 1.340 -0.036 0.258 1.365 sum 0.054 -5.700 -22.599 23.307 Atomic orbital electron populations 1.21732 0.92800 1.03108 1.01396 1.19772 0.96291 0.94110 0.83259 0.92051 1.60635 1.34026 1.32809 1.02546 1.22231 1.00405 0.93145 0.90254 1.20613 0.94166 0.96725 0.94214 1.21596 0.98112 0.97503 1.00096 1.21769 0.96941 0.99610 1.00326 1.19124 0.96970 0.93543 0.90728 1.21254 1.42591 0.96315 0.94156 0.92276 1.25015 0.95947 0.94836 0.98834 1.69968 1.49347 1.08979 1.25552 0.86672 0.78896 0.80104 0.82797 1.20896 1.21414 1.19892 1.24389 0.96661 0.88829 0.95511 1.70471 1.22858 1.15056 1.15979 1.26160 0.95336 0.93447 0.90096 1.50425 1.47037 1.04937 1.15728 1.21912 0.98689 1.04733 0.79085 1.78048 1.22779 1.11831 1.02075 0.91216 0.91306 0.93143 0.83712 0.95822 0.91191 0.93599 0.92822 0.94164 0.94250 0.91728 0.94788 0.96959 0.96607 0.93224 0.76576 0.90383 0.89131 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.40 37.16 0.35 -1.40 16 2 C 0.18 2.61 3.16 -68.86 -0.22 2.39 16 3 H 0.06 0.91 7.80 -51.93 -0.40 0.50 16 4 N -0.67 -10.75 5.51 -107.95 -0.59 -11.34 16 5 C 0.07 1.23 4.45 -3.82 -0.02 1.21 16 6 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 7 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 8 C -0.13 -2.53 7.89 37.16 0.29 -2.23 16 9 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 10 C -0.50 -14.05 7.65 -34.44 -0.26 -14.31 16 11 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.23 3.33 6.63 -156.86 -1.04 2.29 16 19 N -0.52 -7.15 11.18 -11.98 -0.13 -7.28 16 20 C 0.25 2.40 12.66 -90.66 -1.15 1.25 16 21 N -0.39 -3.89 4.04 -69.44 -0.28 -4.17 16 22 C 0.10 0.46 11.53 59.85 0.69 1.15 16 23 N -0.32 -4.43 12.70 32.42 0.41 -4.02 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.91 7.45 -51.93 -0.39 0.52 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.34 5.69 6.39 -39.29 -0.25 5.44 16 28 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 30 H 0.04 0.85 7.60 -51.93 -0.39 0.46 16 31 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 35 H 0.03 0.59 6.57 -51.93 -0.34 0.24 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.22 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.60 338.96 -8.06 -41.66 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.93 Total: 0.38 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.36 Total: -10.74 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.14 Total: -53.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.60 -8.06 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391941438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.727 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds