Wall clock time and date at job start Mon Mar 30 2020 04:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46923 * 299.99733 * 6 5 4 8 8 C 1.52999 * 109.46998 * 59.99872 * 6 5 4 9 9 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 10 10 C 1.50701 * 109.46820 * 179.97438 * 9 6 5 11 11 H 1.08000 * 120.00070 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00019 * 179.97438 * 10 9 6 13 13 N 1.31515 * 120.00228 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00068 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46779 * 90.00373 * 14 12 10 16 16 H 1.48498 * 109.46986 * 210.00365 * 14 12 10 17 17 H 1.48503 * 109.47043 * 330.00844 * 14 12 10 18 18 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 19 19 N 1.33243 * 125.52772 * 285.02538 * 18 2 1 20 20 C 1.30826 * 109.83370 * 180.02562 * 19 18 2 21 21 N 1.34432 * 108.07463 * 0.02562 * 20 19 18 22 22 C 1.46504 * 126.82341 * 180.02562 * 21 20 19 23 23 N 1.30710 * 125.52888 * 104.72381 * 18 2 1 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 26 26 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 27 27 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 1.09002 * 109.47301 * 60.00027 * 7 6 5 31 31 H 1.09001 * 109.47017 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47249 * 300.00302 * 7 6 5 33 33 H 1.09001 * 109.46999 * 60.00126 * 8 6 5 34 34 H 1.09001 * 109.46478 * 179.97438 * 8 6 5 35 35 H 1.08993 * 109.47197 * 299.99817 * 8 6 5 36 36 H 1.08993 * 109.47740 * 299.99810 * 9 6 5 37 37 H 1.09005 * 109.47573 * 59.99976 * 9 6 5 38 38 H 0.97002 * 120.00555 * 179.97438 * 13 12 10 39 39 H 1.08006 * 125.96575 * 179.97438 * 20 19 18 40 40 H 1.08995 * 109.47891 * 89.96604 * 22 21 20 41 41 H 1.09000 * 109.46508 * 209.97484 * 22 21 20 42 42 H 1.09005 * 109.46780 * 329.96367 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 1.6472 -1.6891 3.8955 8 6 3.9935 -1.0850 3.2852 9 6 2.6622 0.4205 4.7691 10 6 3.1677 -0.3237 5.9781 11 1 3.4173 -1.3717 5.9017 12 6 3.3124 0.3336 7.1815 13 7 3.0089 1.6098 7.2744 14 14 3.9397 -0.5888 8.6800 15 1 5.4207 -0.4955 8.7345 16 1 3.3603 0.0110 9.9087 17 1 3.5366 -2.0151 8.5878 18 6 2.0323 -0.7104 -1.2304 19 7 2.0253 -2.0293 -1.4201 20 6 2.5321 -2.3118 -2.5926 21 7 2.8799 -1.1567 -3.1860 22 6 3.4854 -0.9975 -4.5105 23 7 2.5404 -0.1325 -2.2870 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6164 2.5525 30 1 1.6006 -2.3682 3.0441 31 1 2.0130 -2.2270 4.7701 32 1 0.6517 -1.2957 4.1014 33 1 4.6696 -0.2611 3.0563 34 1 4.3596 -1.6228 4.1597 35 1 3.9469 -1.7640 2.4338 36 1 3.3384 1.2440 4.5400 37 1 1.6669 0.8143 4.9752 38 1 3.1104 2.0722 8.1210 39 1 2.6512 -3.3005 -3.0106 40 1 2.7001 -0.8926 -5.2589 41 1 4.1153 -0.1079 -4.5173 42 1 4.0918 -1.8737 -4.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391941438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:41 Heat of formation + Delta-G solvation = 55.662758 kcal Electronic energy + Delta-G solvation = -20371.069465 eV Core-core repulsion = 17386.790917 eV Total energy + Delta-G solvation = -2984.278548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05779 -39.35578 -36.87267 -34.79484 -34.14944 -32.32097 -30.84008 -28.79803 -28.07639 -27.83619 -26.77526 -24.91047 -23.57174 -22.82559 -20.97218 -19.55064 -18.30771 -17.92943 -16.93338 -16.80541 -16.49907 -16.39491 -15.56715 -15.23314 -14.82714 -14.66488 -14.35620 -14.06729 -13.87651 -13.82856 -13.52422 -13.23981 -12.88504 -12.83547 -12.68207 -12.60431 -12.54132 -12.22278 -12.20438 -12.04646 -11.86618 -11.35611 -10.97813 -10.83687 -10.82179 -10.74474 -10.48068 -10.41151 -9.34477 -8.11627 -6.18372 0.63582 1.42238 1.42971 1.47578 1.53889 1.91380 2.45765 3.06198 3.17111 3.22237 3.69367 3.98769 4.13593 4.16374 4.23370 4.37752 4.42838 4.44523 4.59301 4.70670 4.72720 4.75391 4.86456 4.93218 4.99188 5.10440 5.21518 5.24281 5.25308 5.35025 5.35830 5.53590 5.56594 5.61141 5.68846 5.89485 5.94981 5.97539 6.06022 6.38882 6.42720 6.96488 7.16141 7.48657 9.00806 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003520 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.153536 B = 7952.340534 C = 8127.854437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.178 3.822 3 H 0.056 0.944 4 N -0.660 5.660 5 C 0.081 3.919 6 C -0.053 4.053 7 C -0.105 4.105 8 C -0.121 4.121 9 C 0.041 3.959 10 C -0.513 4.513 11 H 0.066 0.934 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.956 3.044 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.214 3.786 19 N -0.556 5.556 20 C 0.257 3.743 21 N -0.386 5.386 22 C 0.089 3.911 23 N -0.351 5.351 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.017 0.983 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.060 0.940 36 H -0.016 1.016 37 H -0.013 1.013 38 H 0.259 0.741 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -8.220 -24.957 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.073 0.927 4 N -0.293 5.293 5 C -0.048 4.048 6 C -0.054 4.054 7 C -0.162 4.162 8 C -0.178 4.178 9 C 0.004 3.996 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.201 4.201 13 N -0.580 5.580 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.069 4.069 19 N -0.284 5.284 20 C -0.039 4.039 21 N -0.177 5.177 22 C -0.051 4.051 23 N -0.181 5.181 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.002 0.998 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.282 0.718 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.683 -7.796 -24.658 25.870 hybrid contribution 1.175 0.623 0.645 1.478 sum 0.491 -7.173 -24.014 25.067 Atomic orbital electron populations 1.21651 0.91981 1.02723 1.01835 1.19728 0.96878 0.93754 0.83103 0.92665 1.60578 1.33802 1.32237 1.02679 1.21956 0.99860 0.92879 0.90140 1.20477 0.95507 0.96067 0.93320 1.21480 0.97357 0.97205 1.00172 1.21668 0.95753 0.99712 1.00690 1.18993 0.94352 0.93611 0.92677 1.21622 1.41921 0.96704 0.94900 0.91627 1.25915 0.96301 0.95665 1.02217 1.70110 1.50754 1.10696 1.26402 0.85576 0.78428 0.79139 0.78709 1.20138 1.21227 1.18691 1.24160 0.97704 0.89424 0.95577 1.70401 1.24807 1.14770 1.18395 1.27037 0.93111 0.94929 0.88826 1.50709 1.46264 1.04223 1.16521 1.22349 0.99452 1.06427 0.76914 1.77930 1.23420 1.13926 1.02796 0.91894 0.91541 0.91999 0.83875 0.96481 0.91482 0.91637 0.94277 0.94766 0.94690 0.93181 0.92106 0.99812 0.99416 0.93184 0.71753 0.88813 0.89551 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.24 9.40 71.98 0.68 -2.56 16 2 C 0.18 5.16 3.16 44.17 0.14 5.30 16 3 H 0.06 1.66 7.80 -2.38 -0.02 1.64 16 4 N -0.66 -20.92 5.51 -495.43 -2.73 -23.65 16 5 C 0.08 2.94 4.45 86.30 0.38 3.33 16 6 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 7 C -0.10 -4.18 8.06 71.98 0.58 -3.60 16 8 C -0.12 -4.67 7.89 71.98 0.57 -4.10 16 9 C 0.04 2.19 4.04 29.85 0.12 2.31 16 10 C -0.51 -28.98 7.65 25.60 0.20 -28.78 16 11 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 13 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 14 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 C 0.21 6.05 6.63 138.63 0.92 6.97 16 19 N -0.56 -14.40 11.18 -191.80 -2.14 -16.54 16 20 C 0.26 4.22 12.66 180.36 2.28 6.50 16 21 N -0.39 -6.75 4.04 -373.60 -1.51 -8.25 16 22 C 0.09 0.55 11.53 127.77 1.47 2.03 16 23 N -0.35 -9.40 12.70 -51.34 -0.65 -10.05 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.74 7.45 -2.38 -0.02 1.72 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.34 10.98 6.39 -89.69 -0.57 10.40 16 28 H 0.02 0.64 8.06 -2.39 -0.02 0.62 16 29 H 0.07 2.48 7.44 -2.39 -0.02 2.46 16 30 H 0.06 2.34 7.60 -2.39 -0.02 2.33 16 31 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 32 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 35 H 0.06 2.01 6.57 -2.39 -0.02 2.00 16 36 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.27 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.13 -0.14 8.14 -2.38 -0.02 -0.15 16 Total: -1.00 -74.17 338.96 3.47 -70.69 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.42 Total: 13.15 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 7.77 Total: -14.64 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.75 Total: -116.40 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.17 3.47 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391941438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.355 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds