Wall clock time and date at job start Mon Mar 30 2020 04:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47137 * 270.00361 * 3 2 1 5 5 H 1.08003 * 120.00424 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00493 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99747 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47397 * 89.99409 * 8 6 4 10 10 H 1.48496 * 109.47239 * 210.00093 * 8 6 4 11 11 H 1.48509 * 109.46847 * 329.99730 * 8 6 4 12 12 C 1.34771 * 120.00179 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00460 * 179.97438 * 12 2 1 14 14 C 1.50709 * 119.99765 * 359.97438 * 12 2 1 15 15 N 1.46898 * 109.47156 * 180.02562 * 14 12 2 16 16 C 1.48488 * 110.99869 * 52.39174 * 15 14 12 17 17 C 1.54924 * 103.21783 * 159.82934 * 16 15 14 18 18 C 1.54442 * 102.94122 * 322.29257 * 17 16 15 19 19 H 1.09007 * 111.71793 * 261.02099 * 18 17 16 20 20 C 1.54597 * 109.02137 * 136.28898 * 18 17 16 21 21 C 1.54888 * 103.92712 * 222.53588 * 20 18 17 22 22 C 1.54823 * 102.90032 * 38.43296 * 21 20 18 23 23 C 1.47920 * 111.00134 * 169.99762 * 15 14 12 24 24 H 1.08998 * 111.86745 * 336.56406 * 23 15 14 25 25 H 1.08997 * 109.46560 * 269.99861 * 1 2 3 26 26 H 1.08997 * 109.46798 * 29.99280 * 1 2 3 27 27 H 1.08995 * 109.47242 * 149.99811 * 1 2 3 28 28 H 1.09003 * 109.47106 * 29.99802 * 3 2 1 29 29 H 1.08994 * 109.47348 * 150.00686 * 3 2 1 30 30 H 0.97003 * 120.00097 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46750 * 60.00407 * 14 12 2 32 32 H 1.08992 * 109.47091 * 300.00463 * 14 12 2 33 33 H 1.09004 * 110.66409 * 41.39949 * 16 15 14 34 34 H 1.09000 * 110.81258 * 278.33303 * 16 15 14 35 35 H 1.09005 * 110.71646 * 203.93219 * 17 16 15 36 36 H 1.08997 * 110.87249 * 80.73086 * 17 16 15 37 37 H 1.09002 * 110.70415 * 103.89979 * 20 18 17 38 38 H 1.09003 * 110.50818 * 341.08059 * 20 18 17 39 39 H 1.09002 * 110.75939 * 280.02864 * 21 20 18 40 40 H 1.08997 * 110.75595 * 156.83605 * 21 20 18 41 41 H 1.08996 * 110.44299 * 80.85065 * 22 21 20 42 42 H 1.09002 * 110.43932 * 203.37540 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2418 6 6 3.1260 2.8780 -1.6728 7 7 3.3447 3.2579 -2.9127 8 14 3.7331 3.9292 -0.2530 9 1 5.1066 3.5081 0.1228 10 1 3.7478 5.3560 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5889 -0.0005 16 6 3.3288 -3.4436 1.0977 17 6 3.8750 -4.8824 1.2751 18 6 2.6209 -5.7576 1.0596 19 1 2.1804 -6.0712 2.0061 20 6 2.9927 -6.9577 0.1587 21 6 1.8005 -7.0698 -0.8237 22 6 1.4510 -5.5896 -1.1134 23 6 1.6508 -4.8755 0.2393 24 1 0.7027 -4.7375 0.7591 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5137 30 1 3.8215 4.0838 -3.0900 31 1 0.7585 -2.5298 -0.8903 32 1 0.7591 -2.5302 0.8896 33 1 2.8418 -3.1015 2.0110 34 1 4.1286 -2.7609 0.8108 35 1 4.2747 -5.0220 2.2796 36 1 4.6341 -5.1048 0.5253 37 1 3.0869 -7.8686 0.7498 38 1 3.9165 -6.7562 -0.3837 39 1 0.9597 -7.5805 -0.3542 40 1 2.1002 -7.5821 -1.7379 41 1 2.1262 -5.1789 -1.8641 42 1 0.4155 -5.5002 -1.4418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393948198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:48 Heat of formation + Delta-G solvation = -24.062556 kcal Electronic energy + Delta-G solvation = -21005.957861 eV Core-core repulsion = 17985.929413 eV Total energy + Delta-G solvation = -3020.028448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15913 -38.67636 -35.22763 -34.45753 -32.57921 -31.93290 -29.16163 -27.81047 -27.02267 -25.98501 -24.95789 -22.19312 -21.11458 -20.68879 -19.25860 -18.47151 -16.94113 -16.54120 -16.31839 -15.37183 -15.14829 -14.99197 -14.30576 -14.23033 -13.88626 -13.47487 -13.06523 -12.82602 -12.69313 -12.35344 -12.03980 -12.01331 -11.71031 -11.42703 -11.33245 -11.18385 -11.10482 -10.89850 -10.83097 -10.73372 -10.56571 -10.51322 -10.35269 -10.10909 -9.50432 -8.83286 -8.57229 -8.22660 -7.67131 -6.06675 -4.05337 3.30025 3.35049 3.36190 3.37649 3.69362 4.16520 4.40812 4.42086 4.51104 4.74853 5.04781 5.16793 5.21877 5.26412 5.31709 5.35340 5.38378 5.42731 5.48454 5.57877 5.66058 5.70357 5.77870 5.84137 5.86157 5.93712 5.98479 6.03105 6.12692 6.15512 6.28118 6.36057 6.53442 6.68838 6.93411 7.07441 7.19048 7.37242 7.62810 8.26282 8.49354 8.95942 9.02846 9.53514 11.06824 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033268 B = 0.004353 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.437556 B = 6431.208146 C = 6592.378849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.507 3.493 13 O -0.526 6.526 14 C 0.030 3.970 15 N -0.491 5.491 16 C 0.033 3.967 17 C -0.121 4.121 18 C -0.101 4.101 19 H 0.077 0.923 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -18.129 8.994 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.402 6.402 14 C -0.102 4.102 15 N -0.216 5.216 16 C -0.094 4.094 17 C -0.159 4.159 18 C -0.120 4.120 19 H 0.096 0.904 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.150 4.150 23 C -0.048 4.048 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.396 -17.927 8.375 20.510 hybrid contribution -0.348 0.796 1.334 1.592 sum -5.744 -17.131 9.709 20.512 Atomic orbital electron populations 1.21659 0.81051 1.03039 1.00312 1.47836 1.06207 1.07080 1.72099 1.19644 0.92382 0.79974 0.98364 1.21337 1.36954 1.07067 0.91288 0.90748 1.24859 0.95257 0.97351 0.95547 1.69899 1.41509 1.23554 1.18653 0.86847 0.80114 0.79752 0.82929 1.19907 1.21080 1.19142 1.20174 0.88193 0.84832 0.77446 1.90591 1.13722 1.86637 1.49264 1.22261 0.95024 0.90684 1.02187 1.64770 1.12692 0.99888 1.44203 1.23525 0.97188 0.97225 0.91508 1.22682 0.96964 0.94795 1.01424 1.22647 0.95930 0.95481 0.97987 0.90442 1.22506 0.98650 0.97000 0.96976 1.22491 0.97882 0.96751 0.99099 1.22385 1.01282 0.94159 0.97144 1.23133 0.95713 0.90058 0.95877 0.92468 0.93794 0.90475 0.92225 0.95328 0.94614 0.92580 0.88267 0.92725 0.94886 0.86669 0.91646 0.90555 0.92093 0.91039 0.91950 0.91650 0.89911 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.47 2.86 -182.95 -0.52 -13.00 16 3 C 0.22 5.37 4.23 -5.19 -0.02 5.34 16 4 C -0.53 -15.38 9.94 -34.44 -0.34 -15.73 16 5 H 0.07 2.39 8.06 -52.48 -0.42 1.96 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.51 10.46 7.38 -10.98 -0.08 10.38 16 13 O -0.53 -12.84 13.08 5.56 0.07 -12.76 16 14 C 0.03 0.46 4.07 -4.97 -0.02 0.44 16 15 N -0.49 -7.53 4.73 -222.83 -1.05 -8.59 16 16 C 0.03 0.50 5.29 -1.93 -0.01 0.49 16 17 C -0.12 -1.46 6.60 -24.96 -0.16 -1.62 16 18 C -0.10 -1.08 3.83 -88.15 -0.34 -1.42 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.11 -1.07 6.40 -24.90 -0.16 -1.23 16 21 C -0.12 -1.13 6.89 -24.77 -0.17 -1.30 16 22 C -0.11 -1.23 6.52 -25.11 -0.16 -1.39 16 23 C 0.06 0.73 3.29 -65.62 -0.22 0.51 16 24 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 28 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 29 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.10 1.43 7.40 -51.93 -0.38 1.04 16 32 H 0.05 0.72 7.84 -51.93 -0.41 0.32 16 33 H 0.03 0.50 8.02 -51.93 -0.42 0.08 16 34 H 0.12 2.16 5.96 -51.93 -0.31 1.85 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.95 7.22 -51.93 -0.38 0.58 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -33.47 324.15 -8.79 -42.26 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.11 Total: -1.07 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.17 Total: -1.59 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.80 Total: -48.81 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.47 -8.79 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393948198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.197 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds