Wall clock time and date at job start Mon Mar 30 2020 04:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47137 * 270.00361 * 3 2 1 5 5 H 1.08003 * 120.00424 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00493 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99747 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47397 * 89.99409 * 8 6 4 10 10 H 1.48496 * 109.47239 * 210.00093 * 8 6 4 11 11 H 1.48509 * 109.46847 * 329.99730 * 8 6 4 12 12 C 1.34771 * 120.00179 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00460 * 179.97438 * 12 2 1 14 14 C 1.50709 * 119.99765 * 359.97438 * 12 2 1 15 15 N 1.46898 * 109.47156 * 180.02562 * 14 12 2 16 16 C 1.48488 * 110.99869 * 52.39174 * 15 14 12 17 17 C 1.54924 * 103.21783 * 159.82934 * 16 15 14 18 18 C 1.54442 * 102.94122 * 322.29257 * 17 16 15 19 19 H 1.09007 * 111.71793 * 261.02099 * 18 17 16 20 20 C 1.54597 * 109.02137 * 136.28898 * 18 17 16 21 21 C 1.54888 * 103.92712 * 222.53588 * 20 18 17 22 22 C 1.54823 * 102.90032 * 38.43296 * 21 20 18 23 23 C 1.47920 * 111.00134 * 169.99762 * 15 14 12 24 24 H 1.08998 * 111.86745 * 336.56406 * 23 15 14 25 25 H 1.08997 * 109.46560 * 269.99861 * 1 2 3 26 26 H 1.08997 * 109.46798 * 29.99280 * 1 2 3 27 27 H 1.08995 * 109.47242 * 149.99811 * 1 2 3 28 28 H 1.09003 * 109.47106 * 29.99802 * 3 2 1 29 29 H 1.08994 * 109.47348 * 150.00686 * 3 2 1 30 30 H 0.97003 * 120.00097 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46750 * 60.00407 * 14 12 2 32 32 H 1.08992 * 109.47091 * 300.00463 * 14 12 2 33 33 H 1.09004 * 110.66409 * 41.39949 * 16 15 14 34 34 H 1.09000 * 110.81258 * 278.33303 * 16 15 14 35 35 H 1.09005 * 110.71646 * 203.93219 * 17 16 15 36 36 H 1.08997 * 110.87249 * 80.73086 * 17 16 15 37 37 H 1.09002 * 110.70415 * 103.89979 * 20 18 17 38 38 H 1.09003 * 110.50818 * 341.08059 * 20 18 17 39 39 H 1.09002 * 110.75939 * 280.02864 * 21 20 18 40 40 H 1.08997 * 110.75595 * 156.83605 * 21 20 18 41 41 H 1.08996 * 110.44299 * 80.85065 * 22 21 20 42 42 H 1.09002 * 110.43932 * 203.37540 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2418 6 6 3.1260 2.8780 -1.6728 7 7 3.3447 3.2579 -2.9127 8 14 3.7331 3.9292 -0.2530 9 1 5.1066 3.5081 0.1228 10 1 3.7478 5.3560 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5889 -0.0005 16 6 3.3288 -3.4436 1.0977 17 6 3.8750 -4.8824 1.2751 18 6 2.6209 -5.7576 1.0596 19 1 2.1804 -6.0712 2.0061 20 6 2.9927 -6.9577 0.1587 21 6 1.8005 -7.0698 -0.8237 22 6 1.4510 -5.5896 -1.1134 23 6 1.6508 -4.8755 0.2393 24 1 0.7027 -4.7375 0.7591 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5137 30 1 3.8215 4.0838 -3.0900 31 1 0.7585 -2.5298 -0.8903 32 1 0.7591 -2.5302 0.8896 33 1 2.8418 -3.1015 2.0110 34 1 4.1286 -2.7609 0.8108 35 1 4.2747 -5.0220 2.2796 36 1 4.6341 -5.1048 0.5253 37 1 3.0869 -7.8686 0.7498 38 1 3.9165 -6.7562 -0.3837 39 1 0.9597 -7.5805 -0.3542 40 1 2.1002 -7.5821 -1.7379 41 1 2.1262 -5.1789 -1.8641 42 1 0.4155 -5.5002 -1.4418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393948198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:48 Heat of formation + Delta-G solvation = -47.414690 kcal Electronic energy + Delta-G solvation = -21006.970486 eV Core-core repulsion = 17985.929413 eV Total energy + Delta-G solvation = -3021.041073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34432 -40.04804 -36.75856 -35.66762 -34.71774 -33.01796 -30.88103 -29.04339 -27.97936 -27.34828 -26.30619 -24.02170 -22.26622 -21.48152 -20.24273 -19.97224 -19.15658 -17.78641 -17.64349 -16.80005 -16.62720 -16.27195 -15.87670 -15.34476 -15.01341 -14.77251 -14.54992 -14.25838 -13.99288 -13.81440 -13.64677 -13.31829 -13.22147 -12.84378 -12.59735 -12.39983 -12.31926 -12.29791 -12.01152 -11.85132 -11.76040 -11.64211 -11.59333 -11.47165 -11.24449 -10.84393 -10.39335 -9.44216 -9.28876 -8.34997 -6.40341 1.31298 1.35882 1.44197 1.78031 2.24104 2.30072 2.99285 3.05439 3.50336 3.56646 3.79523 3.89733 4.20374 4.26536 4.29747 4.32603 4.45195 4.46444 4.54449 4.61498 4.64282 4.66507 4.78568 4.83499 4.89335 4.93142 4.94486 5.04106 5.08951 5.12177 5.23564 5.28815 5.32619 5.40732 5.44942 5.57944 5.62755 5.94236 6.14992 6.24256 6.61129 6.70317 7.20755 7.44533 8.82276 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033268 B = 0.004353 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.437556 B = 6431.208146 C = 6592.378849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.226 3.774 4 C -0.537 4.537 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.494 3.506 13 O -0.576 6.576 14 C 0.043 3.957 15 N -0.517 5.517 16 C 0.034 3.966 17 C -0.115 4.115 18 C -0.096 4.096 19 H 0.099 0.901 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.113 4.113 23 C 0.059 3.941 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -19.641 11.458 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.283 3.717 13 O -0.455 6.455 14 C -0.087 4.087 15 N -0.242 5.242 16 C -0.094 4.094 17 C -0.153 4.153 18 C -0.115 4.115 19 H 0.117 0.883 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.049 4.049 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.341 -19.467 10.843 23.461 hybrid contribution 0.228 1.222 0.461 1.326 sum -7.113 -18.245 11.304 22.611 Atomic orbital electron populations 1.21969 0.77637 1.03994 1.02898 1.47973 1.08438 1.05882 1.71866 1.19303 0.92673 0.82501 0.95199 1.21571 1.36875 1.06675 0.92433 0.95591 1.25880 0.95255 0.98961 0.98689 1.70056 1.42725 1.24505 1.21367 0.85680 0.79508 0.77731 0.79785 1.20266 1.19884 1.16043 1.21194 0.88042 0.86387 0.76079 1.90587 1.16132 1.87539 1.51286 1.22190 0.94588 0.87765 1.04205 1.64735 1.13467 1.01196 1.44758 1.23333 0.96324 0.98317 0.91402 1.22641 0.97582 0.93043 1.02064 1.22693 0.94591 0.95242 0.98955 0.88311 1.22498 0.98212 0.97313 0.96987 1.22476 0.98293 0.95390 0.99386 1.22378 1.01299 0.95409 0.96038 1.23283 0.96449 0.88404 0.96770 0.90635 0.90198 0.91506 0.89431 0.93157 0.96449 0.92251 0.86947 0.89396 0.94679 0.91094 0.89941 0.91720 0.90060 0.92443 0.90049 0.91233 0.92730 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.24 127.77 1.31 3.50 16 2 N -0.61 -25.12 2.86 -851.14 -2.43 -27.55 16 3 C 0.23 11.20 4.23 85.63 0.36 11.57 16 4 C -0.54 -32.38 9.94 25.60 0.25 -32.12 16 5 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.60 5.47 84.66 0.46 1.06 16 7 N -0.95 -61.00 13.96 21.45 0.30 -60.71 16 8 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 12 C 0.49 20.54 7.38 87.66 0.65 21.18 16 13 O -0.58 -29.42 13.08 -3.03 -0.04 -29.46 16 14 C 0.04 1.28 4.07 85.56 0.35 1.63 16 15 N -0.52 -15.50 4.73 -858.90 -4.06 -19.56 16 16 C 0.03 1.04 5.29 86.65 0.46 1.50 16 17 C -0.12 -2.68 6.60 31.74 0.21 -2.47 16 18 C -0.10 -1.78 3.83 -9.19 -0.04 -1.82 16 19 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 20 C -0.11 -1.83 6.40 31.78 0.20 -1.63 16 21 C -0.12 -1.80 6.89 31.86 0.22 -1.58 16 22 C -0.11 -2.27 6.52 31.65 0.21 -2.07 16 23 C 0.06 1.26 3.29 45.71 0.15 1.41 16 24 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 27 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 28 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 29 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.11 3.00 7.40 -2.39 -0.02 2.98 16 32 H 0.09 2.01 7.84 -2.39 -0.02 1.99 16 33 H 0.03 1.04 8.02 -2.38 -0.02 1.02 16 34 H 0.07 2.84 5.96 -2.39 -0.01 2.82 16 35 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.63 7.22 -2.39 -0.02 1.62 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.10 7.23 -2.39 -0.02 1.08 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.41 7.97 -2.39 -0.02 1.39 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.78 324.15 1.37 -76.41 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.93 Total: 13.64 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 4.80 Total: 0.16 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -6.19 Total: -107.81 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -77.78 1.37 -76.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393948198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.995 kcal (2) G-P(sol) polarization free energy of solvation -77.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds