Wall clock time and date at job start Mon Mar 30 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 N 1.46897 * 109.46912 * 119.99644 * 2 1 3 5 5 C 1.46910 * 111.00090 * 204.29256 * 4 2 1 6 6 C 1.50706 * 109.46934 * 293.95711 * 5 4 2 7 7 H 1.08008 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00278 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99872 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47362 * 90.00039 * 10 8 6 12 12 H 1.48507 * 109.47169 * 210.00027 * 10 8 6 13 13 H 1.48500 * 109.47344 * 329.99902 * 10 8 6 14 14 C 1.46897 * 111.00584 * 328.24377 * 4 2 1 15 15 H 1.09002 * 109.72533 * 55.72964 * 14 4 2 16 16 C 1.53330 * 109.73796 * 295.08843 * 14 4 2 17 17 C 1.52588 * 108.41528 * 176.24656 * 16 14 4 18 18 C 1.53000 * 111.04714 * 62.34089 * 17 16 14 19 19 H 1.09005 * 112.06287 * 73.88495 * 18 17 16 20 20 C 1.55344 * 106.43616 * 197.06052 * 18 17 16 21 21 N 1.49255 * 106.09879 * 91.71232 * 20 18 17 22 22 C 1.48241 * 108.75038 * 1.04620 * 21 20 18 23 23 C 1.53902 * 104.02964 * 23.31258 * 22 21 20 24 24 H 1.08999 * 109.20756 * 77.25229 * 23 22 21 25 25 C 1.49636 * 111.92736 * 198.21058 * 23 22 21 26 26 H 1.09000 * 109.47136 * 67.26797 * 1 2 3 27 27 H 1.09005 * 109.46801 * 307.27083 * 1 2 3 28 28 H 1.08993 * 109.47007 * 187.26940 * 1 2 3 29 29 H 1.08995 * 109.47379 * 239.99788 * 2 1 3 30 30 H 1.08996 * 109.47491 * 77.79084 * 3 2 1 31 31 H 1.09003 * 109.47178 * 197.80064 * 3 2 1 32 32 H 1.09006 * 109.47128 * 317.79025 * 3 2 1 33 33 H 1.09000 * 109.46726 * 53.95147 * 5 4 2 34 34 H 1.08996 * 109.47512 * 173.95735 * 5 4 2 35 35 H 0.97002 * 120.00408 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.67008 * 295.97348 * 16 14 4 37 37 H 1.08993 * 109.68062 * 56.50641 * 16 14 4 38 38 H 1.09000 * 109.16051 * 182.74003 * 17 16 14 39 39 H 1.08999 * 109.16514 * 301.98246 * 17 16 14 40 40 H 1.08999 * 109.97094 * 210.92273 * 20 18 17 41 41 H 1.08996 * 109.96640 * 332.18709 * 20 18 17 42 42 H 1.00897 * 110.87800 * 123.35461 * 21 20 18 43 43 H 1.09005 * 110.51308 * 264.67160 * 22 21 20 44 44 H 1.09001 * 110.63752 * 142.01127 * 22 21 20 45 45 H 1.09002 * 109.32665 * 304.80303 * 25 23 22 46 46 H 1.09000 * 108.51139 * 186.09219 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3737 -0.2436 1.5506 6 6 4.3385 -0.6672 0.4731 7 1 3.9815 -1.2153 -0.3863 8 6 5.6767 -0.3549 0.5845 9 7 6.1115 0.3121 1.6313 10 14 6.8727 -0.8806 -0.7507 11 1 6.9647 0.1854 -1.7804 12 1 8.2130 -1.1085 -0.1530 13 1 6.3913 -2.1365 -1.3800 14 6 1.0957 -0.5098 2.3269 15 1 0.0978 -0.8436 2.0425 16 6 1.0524 0.9698 2.7264 17 6 0.0168 1.1399 3.8341 18 6 0.4090 0.3431 5.0800 19 1 1.2330 0.8084 5.6210 20 6 -0.8742 0.2237 5.9474 21 7 -1.5352 -1.0495 5.5355 22 6 -0.7057 -1.7020 4.4944 23 6 0.7029 -1.1262 4.7247 24 1 1.1558 -1.6195 5.5847 25 6 1.5852 -1.3138 3.5308 26 1 -0.3633 0.3971 -0.9478 27 1 -0.3633 0.6224 0.8178 28 1 -0.3633 -1.0193 0.1300 29 1 1.8934 -0.5138 -0.8899 30 1 1.9563 1.8575 1.0044 31 1 3.0837 1.4589 -0.3142 32 1 1.4435 2.0388 -0.6905 33 1 3.3843 0.8426 1.6413 34 1 3.6699 -0.6904 2.4996 35 1 7.0530 0.5321 1.7095 36 1 2.0322 1.2808 3.0891 37 1 0.7707 1.5747 1.8646 38 1 -0.0591 2.1957 4.0939 39 1 -0.9511 0.7892 3.4760 40 1 -0.6074 0.1856 7.0035 41 1 -1.5309 1.0731 5.7594 42 1 -1.6660 -1.6596 6.3284 43 1 -1.0670 -1.4417 3.4995 44 1 -0.7027 -2.7838 4.6277 45 1 1.6128 -2.3706 3.2651 46 1 2.5924 -0.9876 3.7902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401177880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:36 Heat of formation + Delta-G solvation = 11.147040 kcal Electronic energy + Delta-G solvation = -22452.055641 eV Core-core repulsion = 19569.387090 eV Total energy + Delta-G solvation = -2882.668551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37422 -37.95174 -33.74984 -32.72887 -31.76140 -30.15631 -28.99711 -27.59417 -26.12797 -25.53844 -22.69358 -22.37179 -21.66595 -20.73695 -18.83372 -18.10425 -16.61166 -16.05857 -15.40695 -15.20245 -14.41379 -14.14275 -13.89662 -13.72758 -13.56654 -13.14190 -12.98700 -12.58031 -12.48874 -12.04642 -11.85067 -11.69414 -11.58098 -11.20389 -11.08776 -11.01016 -10.82855 -10.73084 -10.70417 -10.61991 -10.30895 -10.27698 -9.98353 -9.74942 -9.43380 -9.36316 -8.93558 -8.44798 -8.34033 -6.99925 -5.98017 -3.97365 3.33103 3.39767 3.44163 4.20102 4.45943 4.66459 4.77847 4.92494 5.08168 5.25635 5.37275 5.38507 5.48379 5.61056 5.65197 5.68517 5.71070 5.75823 5.81977 5.86071 5.96530 5.99477 6.05505 6.17599 6.21653 6.25128 6.31986 6.38467 6.39650 6.43711 6.56110 6.58724 6.63359 6.74400 6.85942 6.92395 7.03665 7.18739 7.34075 7.42963 7.53746 7.88914 8.21573 8.34589 8.68327 9.10854 9.65961 11.12506 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.005712 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.146280 B = 4901.174511 C = 5329.751024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 C -0.188 4.188 4 N -0.528 5.528 5 C 0.184 3.816 6 C -0.499 4.499 7 H 0.059 0.941 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.088 3.912 15 H 0.075 0.925 16 C -0.165 4.165 17 C -0.104 4.104 18 C -0.100 4.100 19 H 0.082 0.918 20 C 0.047 3.953 21 N -0.689 5.689 22 C 0.051 3.949 23 C -0.105 4.105 24 H 0.063 0.937 25 C -0.104 4.104 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.005 0.995 34 H 0.031 0.969 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.332 0.668 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 0.144 5.930 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.016 4.016 3 C -0.246 4.246 4 N -0.251 5.251 5 C 0.059 3.941 6 C -0.538 4.538 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.720 3.280 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.021 4.021 15 H 0.093 0.907 16 C -0.204 4.204 17 C -0.143 4.143 18 C -0.119 4.119 19 H 0.100 0.900 20 C -0.081 4.081 21 N -0.316 5.316 22 C -0.078 4.078 23 C -0.125 4.125 24 H 0.081 0.919 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.454 -0.015 5.437 14.511 hybrid contribution 1.645 0.341 0.114 1.684 sum -11.809 0.325 5.550 13.052 Atomic orbital electron populations 1.22226 0.96923 1.01416 1.00886 1.21404 0.92272 0.92774 0.95132 1.22757 1.02884 0.97370 1.01596 1.62574 1.03776 1.56618 1.02095 1.19912 0.82707 0.94613 0.96904 1.21174 0.91849 1.34577 1.06179 0.92248 1.24942 0.98299 0.95555 0.95777 1.69950 1.15061 1.40404 1.28610 0.86597 0.80464 0.78996 0.81952 1.20879 1.21410 1.19879 1.21710 0.96861 0.92393 0.91116 0.90722 1.22685 0.99603 0.99760 0.98339 1.21469 0.99287 0.98682 0.94817 1.22311 0.96881 0.95963 0.96795 0.89976 1.23269 0.94353 0.93168 0.97353 1.62229 1.48738 1.06507 1.14173 1.22886 0.90836 0.97327 0.96768 1.21593 0.96578 0.95412 0.98917 0.91902 1.20779 0.99425 1.00918 0.93089 0.93409 0.92565 0.92575 0.90789 0.91608 0.90655 0.94645 0.97685 0.95105 0.93130 0.91398 0.90509 0.92937 0.91907 0.93485 0.90681 0.85301 0.90076 0.91804 0.91506 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 7.74 37.16 0.29 -2.11 16 2 C 0.09 1.76 2.82 -67.71 -0.19 1.57 16 3 C -0.19 -3.60 7.33 37.16 0.27 -3.33 16 4 N -0.53 -10.89 4.73 -220.05 -1.04 -11.93 16 5 C 0.18 4.54 3.36 -4.97 -0.02 4.52 16 6 C -0.50 -13.68 7.82 -34.44 -0.27 -13.95 16 7 H 0.06 1.64 7.33 -52.48 -0.38 1.26 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.09 1.51 1.52 -67.64 -0.10 1.40 16 15 H 0.07 1.21 4.55 -51.93 -0.24 0.97 16 16 C -0.17 -2.69 3.01 -26.77 -0.08 -2.77 16 17 C -0.10 -1.42 4.62 -26.94 -0.12 -1.54 16 18 C -0.10 -1.29 3.57 -88.86 -0.32 -1.61 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.05 0.53 7.01 -1.27 -0.01 0.52 16 21 N -0.69 -7.81 7.45 -109.08 -0.81 -8.62 16 22 C 0.05 0.62 6.47 -2.61 -0.02 0.60 16 23 C -0.10 -1.41 2.82 -91.29 -0.26 -1.67 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.10 -1.73 4.43 -28.49 -0.13 -1.85 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.82 5.25 -51.93 -0.27 0.55 16 28 H 0.06 0.84 7.59 -51.93 -0.39 0.44 16 29 H 0.07 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.07 1.26 3.77 -51.93 -0.20 1.06 16 31 H 0.07 1.68 6.82 -51.93 -0.35 1.33 16 32 H 0.03 0.58 8.02 -51.93 -0.42 0.17 16 33 H 0.01 0.14 4.80 -51.93 -0.25 -0.11 16 34 H 0.03 0.83 5.79 -51.93 -0.30 0.53 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.28 6.86 -51.93 -0.36 0.93 16 37 H 0.08 1.26 3.87 -51.93 -0.20 1.06 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.85 7.18 -51.93 -0.37 0.48 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 42 H 0.33 3.19 8.92 -39.29 -0.35 2.84 16 43 H 0.08 1.08 6.08 -51.93 -0.32 0.76 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.39 6.08 -51.93 -0.32 1.08 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -28.26 317.96 -10.01 -38.27 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.61 Total: 5.27 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.05 Total: -18.77 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.12 Total: -46.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.26 -10.01 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.418 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds