Wall clock time and date at job start Mon Mar 30 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 N 1.46897 * 109.46912 * 119.99644 * 2 1 3 5 5 C 1.46910 * 111.00090 * 204.29256 * 4 2 1 6 6 C 1.50706 * 109.46934 * 293.95711 * 5 4 2 7 7 H 1.08008 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00278 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99872 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47362 * 90.00039 * 10 8 6 12 12 H 1.48507 * 109.47169 * 210.00027 * 10 8 6 13 13 H 1.48500 * 109.47344 * 329.99902 * 10 8 6 14 14 C 1.46897 * 111.00584 * 328.24377 * 4 2 1 15 15 H 1.09002 * 109.72533 * 55.72964 * 14 4 2 16 16 C 1.53330 * 109.73796 * 295.08843 * 14 4 2 17 17 C 1.52588 * 108.41528 * 176.24656 * 16 14 4 18 18 C 1.53000 * 111.04714 * 62.34089 * 17 16 14 19 19 H 1.09005 * 112.06287 * 73.88495 * 18 17 16 20 20 C 1.55344 * 106.43616 * 197.06052 * 18 17 16 21 21 N 1.49255 * 106.09879 * 91.71232 * 20 18 17 22 22 C 1.48241 * 108.75038 * 1.04620 * 21 20 18 23 23 C 1.53902 * 104.02964 * 23.31258 * 22 21 20 24 24 H 1.08999 * 109.20756 * 77.25229 * 23 22 21 25 25 C 1.49636 * 111.92736 * 198.21058 * 23 22 21 26 26 H 1.09000 * 109.47136 * 67.26797 * 1 2 3 27 27 H 1.09005 * 109.46801 * 307.27083 * 1 2 3 28 28 H 1.08993 * 109.47007 * 187.26940 * 1 2 3 29 29 H 1.08995 * 109.47379 * 239.99788 * 2 1 3 30 30 H 1.08996 * 109.47491 * 77.79084 * 3 2 1 31 31 H 1.09003 * 109.47178 * 197.80064 * 3 2 1 32 32 H 1.09006 * 109.47128 * 317.79025 * 3 2 1 33 33 H 1.09000 * 109.46726 * 53.95147 * 5 4 2 34 34 H 1.08996 * 109.47512 * 173.95735 * 5 4 2 35 35 H 0.97002 * 120.00408 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.67008 * 295.97348 * 16 14 4 37 37 H 1.08993 * 109.68062 * 56.50641 * 16 14 4 38 38 H 1.09000 * 109.16051 * 182.74003 * 17 16 14 39 39 H 1.08999 * 109.16514 * 301.98246 * 17 16 14 40 40 H 1.08999 * 109.97094 * 210.92273 * 20 18 17 41 41 H 1.08996 * 109.96640 * 332.18709 * 20 18 17 42 42 H 1.00897 * 110.87800 * 123.35461 * 21 20 18 43 43 H 1.09005 * 110.51308 * 264.67160 * 22 21 20 44 44 H 1.09001 * 110.63752 * 142.01127 * 22 21 20 45 45 H 1.09002 * 109.32665 * 304.80303 * 25 23 22 46 46 H 1.09000 * 108.51139 * 186.09219 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3737 -0.2436 1.5506 6 6 4.3385 -0.6672 0.4731 7 1 3.9815 -1.2153 -0.3863 8 6 5.6767 -0.3549 0.5845 9 7 6.1115 0.3121 1.6313 10 14 6.8727 -0.8806 -0.7507 11 1 6.9647 0.1854 -1.7804 12 1 8.2130 -1.1085 -0.1530 13 1 6.3913 -2.1365 -1.3800 14 6 1.0957 -0.5098 2.3269 15 1 0.0978 -0.8436 2.0425 16 6 1.0524 0.9698 2.7264 17 6 0.0168 1.1399 3.8341 18 6 0.4090 0.3431 5.0800 19 1 1.2330 0.8084 5.6210 20 6 -0.8742 0.2237 5.9474 21 7 -1.5352 -1.0495 5.5355 22 6 -0.7057 -1.7020 4.4944 23 6 0.7029 -1.1262 4.7247 24 1 1.1558 -1.6195 5.5847 25 6 1.5852 -1.3138 3.5308 26 1 -0.3633 0.3971 -0.9478 27 1 -0.3633 0.6224 0.8178 28 1 -0.3633 -1.0193 0.1300 29 1 1.8934 -0.5138 -0.8899 30 1 1.9563 1.8575 1.0044 31 1 3.0837 1.4589 -0.3142 32 1 1.4435 2.0388 -0.6905 33 1 3.3843 0.8426 1.6413 34 1 3.6699 -0.6904 2.4996 35 1 7.0530 0.5321 1.7095 36 1 2.0322 1.2808 3.0891 37 1 0.7707 1.5747 1.8646 38 1 -0.0591 2.1957 4.0939 39 1 -0.9511 0.7892 3.4760 40 1 -0.6074 0.1856 7.0035 41 1 -1.5309 1.0731 5.7594 42 1 -1.6660 -1.6596 6.3284 43 1 -1.0670 -1.4417 3.4995 44 1 -0.7027 -2.7838 4.6277 45 1 1.6128 -2.3706 3.2651 46 1 2.5924 -0.9876 3.7902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401177880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:35 Heat of formation + Delta-G solvation = -8.180402 kcal Electronic energy + Delta-G solvation = -22452.893742 eV Core-core repulsion = 19569.387090 eV Total energy + Delta-G solvation = -2883.506652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64961 -39.30597 -35.13586 -34.65546 -33.04551 -31.65971 -30.34236 -29.01044 -27.63501 -27.06425 -24.34814 -23.82054 -22.89501 -21.85762 -20.27990 -19.47074 -18.22421 -17.56094 -16.92139 -16.61305 -16.26537 -15.53038 -15.28574 -15.02190 -14.88658 -14.44523 -14.25332 -14.11940 -13.71188 -13.58576 -13.25512 -13.05577 -12.87552 -12.80020 -12.68461 -12.60439 -12.37350 -12.20818 -12.18811 -11.91821 -11.82539 -11.75199 -11.50953 -11.25909 -11.05860 -10.92274 -10.51218 -10.50346 -9.34643 -8.70910 -8.14740 -6.21866 1.38699 1.39442 1.50620 2.41568 3.17253 3.25419 3.38643 3.65778 3.72008 3.89404 4.14010 4.22015 4.26665 4.32232 4.34757 4.48191 4.53787 4.57181 4.59252 4.66810 4.74035 4.80067 4.82372 4.84255 4.95451 5.00905 5.04073 5.06033 5.13531 5.21205 5.22826 5.32042 5.33979 5.39540 5.43786 5.45385 5.54140 5.61336 5.68965 5.75222 5.85531 6.19068 6.54802 6.55451 6.86435 6.96454 7.46471 8.95093 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.005712 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.146280 B = 4901.174511 C = 5329.751024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 C -0.179 4.179 4 N -0.540 5.540 5 C 0.206 3.794 6 C -0.510 4.510 7 H 0.053 0.947 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.091 3.909 15 H 0.096 0.904 16 C -0.156 4.156 17 C -0.096 4.096 18 C -0.104 4.104 19 H 0.074 0.926 20 C 0.055 3.945 21 N -0.689 5.689 22 C 0.058 3.942 23 C -0.103 4.103 24 H 0.066 0.934 25 C -0.096 4.096 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.064 0.936 33 H -0.015 1.015 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.345 0.655 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -0.065 5.865 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 C -0.237 4.237 4 N -0.263 5.263 5 C 0.080 3.920 6 C -0.549 4.549 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.782 3.218 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.018 4.018 15 H 0.114 0.886 16 C -0.195 4.195 17 C -0.134 4.134 18 C -0.124 4.124 19 H 0.092 0.908 20 C -0.074 4.074 21 N -0.317 5.317 22 C -0.071 4.071 23 C -0.123 4.123 24 H 0.084 0.916 25 C -0.135 4.135 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.003 0.997 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.161 0.839 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.773 -0.231 5.375 16.665 hybrid contribution 2.357 0.402 0.137 2.395 sum -13.416 0.171 5.512 14.506 Atomic orbital electron populations 1.22116 0.93311 1.02284 1.02577 1.21456 0.95116 0.91939 0.93471 1.22634 1.00813 0.98252 1.01991 1.62426 1.02738 1.57083 1.04044 1.19452 0.84886 0.92842 0.94784 1.21467 0.92775 1.34199 1.06456 0.92913 1.25755 1.00120 0.95581 0.97933 1.70076 1.15444 1.41586 1.30449 0.85569 0.78102 0.78824 0.79257 1.20075 1.20972 1.19251 1.21792 0.96698 0.93233 0.90065 0.88623 1.22528 0.98705 0.98789 0.99443 1.21414 0.98367 0.99703 0.93939 1.22323 0.97871 0.95184 0.96979 0.90774 1.23220 0.93082 0.93344 0.97746 1.62209 1.48134 1.06734 1.14656 1.22779 0.89411 0.98077 0.96829 1.21524 0.97060 0.96409 0.97303 0.91563 1.20683 0.98201 1.00128 0.94453 0.91158 0.91627 0.91891 0.92732 0.91950 0.94735 0.91704 0.99749 0.98026 0.93062 0.95004 0.90377 0.91735 0.90895 0.91922 0.90008 0.83923 0.90790 0.90572 0.92269 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 7.74 71.98 0.56 -3.52 16 2 C 0.09 3.34 2.82 44.92 0.13 3.47 16 3 C -0.18 -6.92 7.33 71.98 0.53 -6.40 16 4 N -0.54 -22.84 4.73 -850.10 -4.02 -26.86 16 5 C 0.21 10.78 3.36 85.56 0.29 11.07 16 6 C -0.51 -29.07 7.82 25.60 0.20 -28.87 16 7 H 0.05 3.01 7.33 -2.91 -0.02 2.99 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 C 0.09 3.09 1.52 44.97 0.07 3.16 16 15 H 0.10 2.91 4.55 -2.39 -0.01 2.90 16 16 C -0.16 -5.08 3.01 30.57 0.09 -4.99 16 17 C -0.10 -2.44 4.62 30.46 0.14 -2.30 16 18 C -0.10 -2.54 3.57 -9.65 -0.03 -2.58 16 19 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 20 C 0.05 1.06 7.01 86.65 0.61 1.66 16 21 N -0.69 -13.38 7.45 -499.01 -3.72 -17.09 16 22 C 0.06 1.28 6.47 86.35 0.56 1.84 16 23 C -0.10 -2.68 2.82 -11.23 -0.03 -2.71 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 C -0.10 -3.28 4.43 29.46 0.13 -3.15 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.72 5.25 -2.38 -0.01 1.71 16 28 H 0.06 1.70 7.59 -2.39 -0.02 1.68 16 29 H 0.05 2.25 7.71 -2.39 -0.02 2.24 16 30 H 0.06 2.44 3.77 -2.39 -0.01 2.43 16 31 H 0.03 1.59 6.82 -2.39 -0.02 1.57 16 32 H 0.06 2.07 8.02 -2.38 -0.02 2.05 16 33 H -0.02 -0.84 4.80 -2.39 -0.01 -0.85 16 34 H 0.00 0.10 5.79 -2.39 -0.01 0.09 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.03 1.26 6.86 -2.38 -0.02 1.24 16 37 H 0.08 2.50 3.87 -2.39 -0.01 2.49 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.75 7.18 -2.39 -0.02 1.73 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.52 7.74 -2.39 -0.02 1.50 16 42 H 0.34 5.44 8.92 -89.70 -0.80 4.64 16 43 H 0.07 1.75 6.08 -2.38 -0.01 1.74 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.03 1.37 6.08 -2.39 -0.01 1.36 16 Total: -1.00 -63.19 317.96 -1.56 -64.75 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.17 Total: 21.03 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.69 Total: -32.66 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -7.45 Total: -100.38 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -63.19 -1.56 -64.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.569 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds