Wall clock time and date at job start Mon Mar 30 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 N 1.46895 * 109.47266 * 120.00296 * 2 1 3 5 5 C 1.46899 * 111.00205 * 293.96854 * 4 2 1 6 6 C 1.50693 * 109.47574 * 156.04023 * 5 4 2 7 7 H 1.08004 * 120.00180 * 356.51920 * 6 5 4 8 8 C 1.37884 * 120.00280 * 176.51946 * 6 5 4 9 9 N 1.31512 * 119.99640 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99961 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47100 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46917 * 120.00200 * 10 8 6 13 13 H 1.48496 * 109.46971 * 240.00207 * 10 8 6 14 14 C 1.46907 * 111.00262 * 170.01417 * 4 2 1 15 15 H 1.09001 * 109.67144 * 57.10863 * 14 4 2 16 16 C 1.53332 * 109.67410 * 296.60243 * 14 4 2 17 17 C 1.52825 * 108.10514 * 176.16795 * 16 14 4 18 18 C 1.50745 * 111.72961 * 58.91748 * 17 16 14 19 19 H 1.09000 * 109.26457 * 186.91850 * 18 17 16 20 20 C 1.53902 * 113.00704 * 65.12158 * 18 17 16 21 21 N 1.48235 * 104.02754 * 198.45799 * 20 18 17 22 22 C 1.47586 * 108.56515 * 23.33837 * 21 20 18 23 23 C 1.53998 * 113.92052 * 309.34580 * 18 17 16 24 24 H 1.09004 * 112.17518 * 280.80839 * 23 18 17 25 25 C 1.51807 * 111.64680 * 46.67496 * 23 18 17 26 26 H 1.09002 * 109.47143 * 306.48595 * 1 2 3 27 27 H 1.08994 * 109.47485 * 66.48660 * 1 2 3 28 28 H 1.09002 * 109.47469 * 186.48841 * 1 2 3 29 29 H 1.09009 * 109.47048 * 239.99969 * 2 1 3 30 30 H 1.09000 * 109.46837 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.46998 * 300.00016 * 3 2 1 32 32 H 1.09002 * 109.46841 * 60.00629 * 3 2 1 33 33 H 1.09007 * 109.47172 * 276.03822 * 5 4 2 34 34 H 1.09004 * 109.46801 * 36.03746 * 5 4 2 35 35 H 0.96997 * 119.99575 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.73607 * 295.82752 * 16 14 4 37 37 H 1.09001 * 109.73363 * 56.52065 * 16 14 4 38 38 H 1.08997 * 109.02551 * 179.49316 * 17 16 14 39 39 H 1.08995 * 109.02758 * 298.41399 * 17 16 14 40 40 H 1.09001 * 110.51739 * 317.09406 * 20 18 17 41 41 H 1.09002 * 110.51644 * 79.82350 * 20 18 17 42 42 H 1.00905 * 111.00254 * 145.60247 * 21 20 18 43 43 H 1.09008 * 109.96929 * 120.37125 * 22 21 20 44 44 H 1.08997 * 109.97380 * 241.59550 * 22 21 20 45 45 H 1.09009 * 109.41471 * 187.08041 * 25 23 18 46 46 H 1.08998 * 108.65386 * 68.03824 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 1.6699 0.0516 2.4167 6 6 1.6355 -0.8928 3.5904 7 1 1.7964 -1.9499 3.4379 8 6 1.3987 -0.4076 4.8591 9 7 1.2023 0.8795 5.0448 10 14 1.3553 -1.5785 6.3140 11 1 1.6022 -2.9645 5.8414 12 1 2.4057 -1.1935 7.2906 13 1 0.0232 -1.5083 6.9662 14 6 3.4686 -0.9216 1.1204 15 1 3.9834 0.0293 0.9830 16 6 3.7807 -1.8526 -0.0573 17 6 5.2989 -1.9893 -0.1652 18 6 5.9009 -2.5431 1.1010 19 1 6.9878 -2.5090 1.0274 20 6 5.4587 -3.9876 1.3955 21 7 5.7585 -4.1685 2.8359 22 6 5.7912 -2.8407 3.4795 23 6 5.4562 -1.8063 2.3781 24 1 5.9969 -0.8709 2.5228 25 6 3.9542 -1.5879 2.4043 26 1 -0.3633 0.6111 0.8263 27 1 -0.3634 0.4100 -0.9423 28 1 -0.3634 -1.0211 0.1161 29 1 1.8933 -0.5139 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.4154 0.8265 2.5956 34 1 0.6898 0.5121 2.2920 35 1 1.0361 1.2209 5.9373 36 1 3.3345 -2.8313 0.1190 37 1 3.3831 -1.4267 -0.9785 38 1 5.5376 -2.6564 -0.9935 39 1 5.7309 -1.0084 -0.3633 40 1 4.3911 -4.1057 1.2097 41 1 6.0325 -4.6929 0.7944 42 1 5.0747 -4.7664 3.2753 43 1 5.0413 -2.7911 4.2691 44 1 6.7813 -2.6523 3.8944 45 1 3.6945 -0.9576 3.2550 46 1 3.4631 -2.5549 2.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401177881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:38 Heat of formation + Delta-G solvation = -4.279033 kcal Electronic energy + Delta-G solvation = -22557.046963 eV Core-core repulsion = 19673.709487 eV Total energy + Delta-G solvation = -2883.337476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05894 -37.63423 -34.10157 -33.00661 -31.55027 -30.04943 -28.74121 -26.74298 -26.45557 -26.21103 -23.04322 -22.05922 -21.16365 -20.59986 -18.56834 -18.13928 -16.66336 -15.87736 -15.50721 -14.96542 -14.63712 -14.41465 -13.90640 -13.60150 -13.35651 -12.88345 -12.57220 -12.52961 -12.26374 -12.15911 -11.96635 -11.79726 -11.43694 -11.30087 -11.19604 -11.02309 -10.95509 -10.69131 -10.60236 -10.55069 -10.35457 -10.13273 -9.99343 -9.71763 -9.69630 -9.09952 -9.04565 -8.36805 -8.17055 -7.15531 -6.01493 -3.97973 3.28446 3.37312 3.40309 4.40690 4.48705 4.71724 4.83577 5.06476 5.25007 5.31320 5.42449 5.47953 5.55884 5.65675 5.72204 5.72941 5.83152 5.88455 5.93886 5.95167 6.05449 6.07683 6.15836 6.21293 6.26273 6.27536 6.31294 6.37506 6.41089 6.45458 6.63864 6.65127 6.70911 6.82531 6.85847 7.02013 7.11098 7.29393 7.39762 7.50837 7.57227 7.86733 8.18755 8.30274 8.60866 9.06782 9.61126 11.08403 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.009880 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.198320 B = 2833.364629 C = 4498.164095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.527 5.527 5 C 0.190 3.810 6 C -0.492 4.492 7 H 0.065 0.935 8 C 0.052 3.948 9 N -0.898 5.898 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.100 3.900 15 H 0.027 0.973 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.090 4.090 19 H 0.067 0.933 20 C 0.051 3.949 21 N -0.687 5.687 22 C 0.048 3.952 23 C -0.105 4.105 24 H 0.076 0.924 25 C -0.109 4.109 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.063 0.937 33 H -0.005 1.005 34 H 0.029 0.971 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.336 0.664 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 -4.416 -9.240 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.531 4.531 7 H 0.083 0.917 8 C -0.148 4.148 9 N -0.539 5.539 10 Si 0.716 3.284 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.009 4.009 15 H 0.045 0.955 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.109 4.109 19 H 0.085 0.915 20 C -0.078 4.078 21 N -0.316 5.316 22 C -0.081 4.081 23 C -0.124 4.124 24 H 0.094 0.906 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.150 0.850 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.126 0.874 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.853 -4.822 -9.128 12.391 hybrid contribution -0.586 0.567 0.925 1.233 sum 6.267 -4.255 -8.203 11.165 Atomic orbital electron populations 1.21800 0.95104 1.02269 1.00430 1.21649 0.95429 0.91824 0.94582 1.22472 1.00819 0.99136 1.01775 1.62373 1.11589 1.48618 1.02564 1.19766 0.95741 0.92474 0.85517 1.21295 1.46401 0.94627 0.90742 0.91658 1.24965 0.96049 0.94970 0.98857 1.69960 1.49631 1.12215 1.22053 0.86589 0.77593 0.81328 0.82855 1.19718 1.21180 1.21162 1.21339 0.88939 0.95856 0.94717 0.95475 1.21718 0.94406 1.00609 0.98355 1.20874 0.96321 1.00474 0.96445 1.21375 0.99741 0.94747 0.95022 0.91496 1.22730 0.99420 0.96269 0.89374 1.62020 1.53363 1.13113 1.03073 1.22807 1.00838 0.87870 0.96606 1.22166 0.98610 0.97860 0.93806 0.90595 1.21788 0.90901 1.02217 0.99748 0.92189 0.93796 0.92222 0.91445 0.93328 0.93531 0.91793 0.98676 0.95264 0.93128 0.91552 0.92447 0.92457 0.92383 0.93141 0.91283 0.84950 0.92286 0.91522 0.87388 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.03 37.16 0.34 -2.01 16 2 C 0.07 1.30 2.77 -67.72 -0.19 1.11 16 3 C -0.18 -3.10 8.57 37.16 0.32 -2.78 16 4 N -0.53 -10.73 4.29 -220.19 -0.95 -11.68 16 5 C 0.19 4.66 2.90 -4.98 -0.01 4.64 16 6 C -0.49 -12.96 6.32 -34.44 -0.22 -13.17 16 7 H 0.07 1.73 6.38 -52.48 -0.33 1.40 16 8 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 9 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.10 1.83 1.63 -67.75 -0.11 1.72 16 15 H 0.03 0.52 6.52 -51.93 -0.34 0.19 16 16 C -0.11 -1.71 5.06 -26.65 -0.13 -1.85 16 17 C -0.10 -1.35 5.38 -27.95 -0.15 -1.50 16 18 C -0.09 -1.24 2.85 -90.76 -0.26 -1.50 16 19 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 20 C 0.05 0.70 6.52 -2.62 -0.02 0.68 16 21 N -0.69 -9.94 7.41 -110.70 -0.82 -10.76 16 22 C 0.05 0.74 6.92 -2.52 -0.02 0.72 16 23 C -0.10 -1.66 3.43 -89.77 -0.31 -1.97 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 C -0.11 -2.07 2.63 -27.55 -0.07 -2.14 16 26 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.08 5.93 -51.92 -0.31 0.78 16 30 H 0.05 0.81 6.64 -51.93 -0.34 0.47 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.23 6.77 -51.93 -0.35 0.88 16 33 H 0.00 -0.12 7.48 -51.93 -0.39 -0.51 16 34 H 0.03 0.77 5.79 -51.93 -0.30 0.47 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.05 6.80 -51.93 -0.35 0.70 16 37 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.73 6.15 -51.93 -0.32 0.41 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.34 4.63 8.91 -39.29 -0.35 4.28 16 43 H 0.06 0.98 7.74 -51.92 -0.40 0.58 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.11 2.47 5.33 -51.92 -0.28 2.19 16 46 H 0.06 1.18 6.33 -51.93 -0.33 0.85 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -27.36 326.31 -10.06 -37.41 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.99 Total: 5.87 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.93 Total: -16.72 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -1.03 Total: -47.60 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.36 -10.06 -37.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.134 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds