Wall clock time and date at job start Mon Mar 30 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 N 1.46895 * 109.47266 * 120.00296 * 2 1 3 5 5 C 1.46899 * 111.00205 * 293.96854 * 4 2 1 6 6 C 1.50693 * 109.47574 * 156.04023 * 5 4 2 7 7 H 1.08004 * 120.00180 * 356.51920 * 6 5 4 8 8 C 1.37884 * 120.00280 * 176.51946 * 6 5 4 9 9 N 1.31512 * 119.99640 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99961 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47100 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46917 * 120.00200 * 10 8 6 13 13 H 1.48496 * 109.46971 * 240.00207 * 10 8 6 14 14 C 1.46907 * 111.00262 * 170.01417 * 4 2 1 15 15 H 1.09001 * 109.67144 * 57.10863 * 14 4 2 16 16 C 1.53332 * 109.67410 * 296.60243 * 14 4 2 17 17 C 1.52825 * 108.10514 * 176.16795 * 16 14 4 18 18 C 1.50745 * 111.72961 * 58.91748 * 17 16 14 19 19 H 1.09000 * 109.26457 * 186.91850 * 18 17 16 20 20 C 1.53902 * 113.00704 * 65.12158 * 18 17 16 21 21 N 1.48235 * 104.02754 * 198.45799 * 20 18 17 22 22 C 1.47586 * 108.56515 * 23.33837 * 21 20 18 23 23 C 1.53998 * 113.92052 * 309.34580 * 18 17 16 24 24 H 1.09004 * 112.17518 * 280.80839 * 23 18 17 25 25 C 1.51807 * 111.64680 * 46.67496 * 23 18 17 26 26 H 1.09002 * 109.47143 * 306.48595 * 1 2 3 27 27 H 1.08994 * 109.47485 * 66.48660 * 1 2 3 28 28 H 1.09002 * 109.47469 * 186.48841 * 1 2 3 29 29 H 1.09009 * 109.47048 * 239.99969 * 2 1 3 30 30 H 1.09000 * 109.46837 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.46998 * 300.00016 * 3 2 1 32 32 H 1.09002 * 109.46841 * 60.00629 * 3 2 1 33 33 H 1.09007 * 109.47172 * 276.03822 * 5 4 2 34 34 H 1.09004 * 109.46801 * 36.03746 * 5 4 2 35 35 H 0.96997 * 119.99575 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.73607 * 295.82752 * 16 14 4 37 37 H 1.09001 * 109.73363 * 56.52065 * 16 14 4 38 38 H 1.08997 * 109.02551 * 179.49316 * 17 16 14 39 39 H 1.08995 * 109.02758 * 298.41399 * 17 16 14 40 40 H 1.09001 * 110.51739 * 317.09406 * 20 18 17 41 41 H 1.09002 * 110.51644 * 79.82350 * 20 18 17 42 42 H 1.00905 * 111.00254 * 145.60247 * 21 20 18 43 43 H 1.09008 * 109.96929 * 120.37125 * 22 21 20 44 44 H 1.08997 * 109.97380 * 241.59550 * 22 21 20 45 45 H 1.09009 * 109.41471 * 187.08041 * 25 23 18 46 46 H 1.08998 * 108.65386 * 68.03824 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 1.6699 0.0516 2.4167 6 6 1.6355 -0.8928 3.5904 7 1 1.7964 -1.9499 3.4379 8 6 1.3987 -0.4076 4.8591 9 7 1.2023 0.8795 5.0448 10 14 1.3553 -1.5785 6.3140 11 1 1.6022 -2.9645 5.8414 12 1 2.4057 -1.1935 7.2906 13 1 0.0232 -1.5083 6.9662 14 6 3.4686 -0.9216 1.1204 15 1 3.9834 0.0293 0.9830 16 6 3.7807 -1.8526 -0.0573 17 6 5.2989 -1.9893 -0.1652 18 6 5.9009 -2.5431 1.1010 19 1 6.9878 -2.5090 1.0274 20 6 5.4587 -3.9876 1.3955 21 7 5.7585 -4.1685 2.8359 22 6 5.7912 -2.8407 3.4795 23 6 5.4562 -1.8063 2.3781 24 1 5.9969 -0.8709 2.5228 25 6 3.9542 -1.5879 2.4043 26 1 -0.3633 0.6111 0.8263 27 1 -0.3634 0.4100 -0.9423 28 1 -0.3634 -1.0211 0.1161 29 1 1.8933 -0.5139 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.4154 0.8265 2.5956 34 1 0.6898 0.5121 2.2920 35 1 1.0361 1.2209 5.9373 36 1 3.3345 -2.8313 0.1190 37 1 3.3831 -1.4267 -0.9785 38 1 5.5376 -2.6564 -0.9935 39 1 5.7309 -1.0084 -0.3633 40 1 4.3911 -4.1057 1.2097 41 1 6.0325 -4.6929 0.7944 42 1 5.0747 -4.7664 3.2753 43 1 5.0413 -2.7911 4.2691 44 1 6.7813 -2.6523 3.8944 45 1 3.6945 -0.9576 3.2550 46 1 3.4631 -2.5549 2.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401177881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:37 Heat of formation + Delta-G solvation = -22.281955 kcal Electronic energy + Delta-G solvation = -22557.827628 eV Core-core repulsion = 19673.709487 eV Total energy + Delta-G solvation = -2884.118141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38012 -39.10925 -35.37769 -34.97106 -33.04870 -31.41773 -30.29710 -28.22969 -27.95220 -27.67951 -24.73021 -23.51834 -22.56064 -21.87955 -20.04542 -19.53242 -18.52785 -17.09470 -16.93942 -16.64568 -16.28217 -15.95282 -15.35022 -15.00098 -14.84313 -14.26103 -14.07430 -13.89423 -13.80326 -13.72950 -13.24918 -13.11364 -12.96855 -12.89676 -12.69989 -12.62070 -12.41611 -12.33642 -12.07202 -11.97678 -11.90356 -11.70381 -11.45608 -11.31566 -11.04475 -10.87101 -10.66108 -10.39726 -9.34734 -8.86078 -8.13505 -6.15957 1.35797 1.38249 1.49043 2.40096 3.17147 3.25393 3.34373 3.64955 3.80297 4.02805 4.05771 4.22061 4.27200 4.27605 4.34132 4.52144 4.54651 4.61278 4.64173 4.71238 4.75671 4.80313 4.87900 4.89981 4.92595 4.98830 5.04861 5.06909 5.12756 5.20599 5.23790 5.33082 5.38707 5.39269 5.41729 5.43170 5.49868 5.67911 5.75309 5.80131 5.92609 6.19238 6.42270 6.55410 6.80221 6.95765 7.46964 8.96160 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.009880 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.198320 B = 2833.364629 C = 4498.164095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 C -0.175 4.175 4 N -0.535 5.535 5 C 0.214 3.786 6 C -0.488 4.488 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.949 3.051 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.098 3.902 15 H 0.017 0.983 16 C -0.103 4.103 17 C -0.098 4.098 18 C -0.083 4.083 19 H 0.081 0.919 20 C 0.052 3.948 21 N -0.686 5.686 22 C 0.050 3.950 23 C -0.106 4.106 24 H 0.074 0.926 25 C -0.094 4.094 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.029 0.971 33 H -0.039 1.039 34 H 0.004 0.996 35 H 0.259 0.741 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.338 0.662 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 -6.044 -11.358 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 C -0.233 4.233 4 N -0.259 5.259 5 C 0.087 3.913 6 C -0.527 4.527 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.578 5.578 10 Si 0.776 3.224 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.010 4.010 15 H 0.035 0.965 16 C -0.141 4.141 17 C -0.136 4.136 18 C -0.102 4.102 19 H 0.100 0.900 20 C -0.077 4.077 21 N -0.315 5.315 22 C -0.079 4.079 23 C -0.125 4.125 24 H 0.092 0.908 25 C -0.132 4.132 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.048 0.952 33 H -0.021 1.021 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.091 -6.467 -11.265 15.304 hybrid contribution -0.971 1.092 1.543 2.125 sum 7.120 -5.375 -9.722 13.195 Atomic orbital electron populations 1.21766 0.94734 1.01547 1.01074 1.21841 0.95821 0.92215 0.94064 1.22372 1.00728 0.98697 1.01550 1.62342 1.13296 1.48148 1.02121 1.19309 0.93293 0.91383 0.87272 1.21493 1.45087 0.94517 0.91587 0.92129 1.25714 0.96042 0.96323 1.01550 1.70084 1.51202 1.13957 1.22556 0.85621 0.77478 0.79696 0.79653 1.18828 1.20857 1.20946 1.21432 0.87371 0.96185 0.96036 0.96473 1.21638 0.96284 0.99203 0.96929 1.20866 0.94305 1.01569 0.96882 1.21371 1.00584 0.94214 0.93987 0.90027 1.22796 0.99232 0.96677 0.88963 1.62095 1.53468 1.12253 1.03648 1.22758 1.00655 0.88489 0.96022 1.22120 0.96144 0.98357 0.95924 0.90795 1.21487 0.93228 1.00089 0.98369 0.95130 0.90325 0.92773 0.88609 0.93301 0.90451 0.95216 1.02135 0.97766 0.93186 0.92054 0.91009 0.89504 0.91769 0.94080 0.89162 0.84666 0.94447 0.90473 0.92151 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.03 71.98 0.65 -3.79 16 2 C 0.07 2.35 2.77 44.91 0.12 2.47 16 3 C -0.17 -5.83 8.57 71.98 0.62 -5.21 16 4 N -0.54 -22.08 4.29 -850.55 -3.65 -25.73 16 5 C 0.21 11.02 2.90 85.55 0.25 11.27 16 6 C -0.49 -26.81 6.32 25.60 0.16 -26.65 16 7 H 0.06 3.32 6.38 -2.91 -0.02 3.30 16 8 C 0.00 0.04 5.46 84.66 0.46 0.50 16 9 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 10 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 C 0.10 3.56 1.63 44.89 0.07 3.63 16 15 H 0.02 0.67 6.52 -2.39 -0.02 0.65 16 16 C -0.10 -2.85 5.06 30.65 0.16 -2.69 16 17 C -0.10 -2.21 5.38 29.80 0.16 -2.04 16 18 C -0.08 -2.05 2.85 -10.88 -0.03 -2.08 16 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.05 1.28 6.52 86.35 0.56 1.84 16 21 N -0.69 -18.67 7.41 -504.15 -3.73 -22.40 16 22 C 0.05 1.52 6.92 86.77 0.60 2.12 16 23 C -0.11 -3.29 3.43 -10.25 -0.04 -3.33 16 24 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 25 C -0.09 -3.64 2.63 30.07 0.08 -3.56 16 26 H 0.03 1.17 6.48 -2.39 -0.02 1.16 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 2.77 5.93 -2.38 -0.01 2.76 16 30 H 0.05 1.60 6.64 -2.39 -0.02 1.58 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.17 6.77 -2.39 -0.02 1.16 16 33 H -0.04 -2.25 7.48 -2.38 -0.02 -2.27 16 34 H 0.00 0.24 5.79 -2.39 -0.01 0.23 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.06 1.79 6.80 -2.39 -0.02 1.77 16 37 H 0.07 1.80 6.17 -2.39 -0.01 1.78 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.10 6.15 -2.39 -0.01 1.08 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.34 8.93 8.91 -89.69 -0.80 8.13 16 43 H 0.04 1.27 7.74 -2.38 -0.02 1.25 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.06 2.91 5.33 -2.38 -0.01 2.90 16 46 H 0.04 1.73 6.33 -2.39 -0.02 1.71 16 Total: -1.00 -61.72 326.31 -1.09 -62.81 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.16 Total: 22.20 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.83 Total: -27.51 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -7.10 Total: -104.15 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.72 -1.09 -62.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -61.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds