Wall clock time and date at job start Mon Mar 30 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46725 * 2 1 4 4 N 1.46896 * 109.47046 * 119.99896 * 2 1 3 5 5 C 1.46897 * 110.99797 * 203.21145 * 4 2 1 6 6 C 1.50697 * 109.47378 * 293.47764 * 5 4 2 7 7 H 1.08002 * 119.99621 * 4.44062 * 6 5 4 8 8 C 1.37874 * 120.00429 * 184.44300 * 6 5 4 9 9 N 1.31518 * 119.99747 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00343 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46920 * 59.99838 * 10 8 6 12 12 H 1.48501 * 109.47264 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46796 * 299.99719 * 10 8 6 14 14 C 1.46904 * 111.00253 * 327.16515 * 4 2 1 15 15 H 1.09004 * 109.03080 * 52.03686 * 14 4 2 16 16 C 1.52523 * 109.04476 * 293.07124 * 14 4 2 17 17 C 1.53804 * 111.69121 * 185.42173 * 16 14 4 18 18 C 1.51627 * 107.04099 * 57.55432 * 17 16 14 19 19 H 1.08997 * 110.49698 * 55.22926 * 18 17 16 20 20 C 1.53068 * 116.62622 * 183.69824 * 18 17 16 21 21 N 1.49069 * 103.41553 * 155.97029 * 20 18 17 22 22 C 1.48650 * 108.29730 * 335.64375 * 21 20 18 23 23 C 1.52335 * 105.83756 * 356.79846 * 22 21 20 24 24 H 1.09005 * 109.87600 * 272.32350 * 23 22 21 25 25 C 1.51451 * 117.73634 * 145.57461 * 23 22 21 26 26 H 1.08996 * 109.47179 * 306.06648 * 1 2 3 27 27 H 1.09002 * 109.47114 * 66.06381 * 1 2 3 28 28 H 1.08998 * 109.47198 * 186.06548 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99998 * 2 1 3 30 30 H 1.09007 * 109.46796 * 192.45409 * 3 2 1 31 31 H 1.08997 * 109.47323 * 312.44991 * 3 2 1 32 32 H 1.08996 * 109.47343 * 72.45834 * 3 2 1 33 33 H 1.09001 * 109.47395 * 53.47948 * 5 4 2 34 34 H 1.09011 * 109.46956 * 173.47927 * 5 4 2 35 35 H 0.96999 * 120.00201 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.03967 * 64.84977 * 16 14 4 37 37 H 1.09001 * 108.97646 * 305.95011 * 16 14 4 38 38 H 1.09002 * 109.94230 * 298.17183 * 17 16 14 39 39 H 1.09003 * 109.94473 * 176.93631 * 17 16 14 40 40 H 1.09008 * 110.63002 * 274.44530 * 20 18 17 41 41 H 1.08993 * 110.63516 * 37.48462 * 20 18 17 42 42 H 1.00903 * 111.00150 * 97.73710 * 21 20 18 43 43 H 1.09007 * 110.17709 * 237.70837 * 22 21 20 44 44 H 1.09007 * 110.17789 * 115.89344 * 22 21 20 45 45 H 1.08998 * 109.93543 * 300.36447 * 25 23 22 46 46 H 1.08993 * 109.93845 * 61.59231 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3835 -0.2624 1.5356 6 6 4.3337 -0.7176 0.4582 7 1 3.9531 -1.2078 -0.4257 8 6 5.6890 -0.5084 0.6008 9 7 6.1526 0.0880 1.6774 10 14 6.8670 -1.0732 -0.7344 11 1 6.5313 -0.3928 -2.0109 12 1 8.2585 -0.7326 -0.3434 13 1 6.7475 -2.5429 -0.9105 14 6 1.1088 -0.4887 2.3338 15 1 0.0958 -0.7502 2.0276 16 6 1.1420 0.9808 2.7410 17 6 0.3114 1.2380 4.0097 18 6 0.8736 0.3441 5.0977 19 1 1.9420 0.5202 5.2223 20 6 0.1454 0.3612 6.4440 21 7 0.4982 -0.9566 7.0449 22 6 0.8420 -1.8944 5.9439 23 6 0.6070 -1.1226 4.6518 24 1 -0.4312 -1.2321 4.3383 25 6 1.5296 -1.4049 3.4844 26 1 -0.3633 0.6050 0.8307 27 1 -0.3633 0.4169 -0.9393 28 1 -0.3633 -1.0219 0.1086 29 1 1.8934 -0.5138 -0.8900 30 1 3.1072 1.4506 -0.2216 31 1 1.5071 2.0162 -0.7582 32 1 1.8690 1.8883 0.9798 33 1 3.4136 0.8245 1.6111 34 1 3.6781 -0.7012 2.4891 35 1 7.1060 0.2356 1.7777 36 1 0.7428 1.5848 1.9261 37 1 2.1753 1.2737 2.9272 38 1 -0.7338 0.9884 3.8267 39 1 0.3986 2.2835 4.3056 40 1 0.5102 1.1775 7.0676 41 1 -0.9316 0.4404 6.2972 42 1 1.2651 -0.8644 7.6941 43 1 0.1954 -2.7711 5.9811 44 1 1.8875 -2.1941 6.0181 45 1 2.5602 -1.1865 3.7639 46 1 1.4385 -2.4483 3.1825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401177885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:40 Heat of formation + Delta-G solvation = 12.341498 kcal Electronic energy + Delta-G solvation = -22312.183197 eV Core-core repulsion = 19429.566442 eV Total energy + Delta-G solvation = -2882.616756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31011 -38.07305 -34.11063 -32.74797 -31.65170 -30.17064 -28.74762 -27.70660 -26.18658 -25.60008 -22.94046 -22.37657 -20.74901 -20.68462 -19.61640 -18.28196 -16.42717 -15.98243 -15.44968 -14.83019 -14.63080 -14.37429 -14.33726 -13.86170 -13.52955 -13.23994 -12.72266 -12.38511 -12.13256 -12.10897 -12.00889 -11.81635 -11.72521 -11.24310 -11.10051 -11.03383 -10.95393 -10.77270 -10.65281 -10.50630 -10.41601 -10.21111 -10.05237 -9.66183 -9.48656 -9.43446 -9.00551 -8.46849 -8.38115 -7.05554 -6.00348 -3.99959 3.33677 3.37897 3.41045 4.23922 4.43246 4.53050 4.75734 5.02773 5.05954 5.31227 5.35581 5.43739 5.50535 5.58621 5.61450 5.67863 5.71878 5.76478 5.81342 5.87057 5.96384 5.97479 6.00505 6.07120 6.15220 6.20262 6.29145 6.31660 6.36133 6.44778 6.52491 6.55411 6.59515 6.73813 6.81689 6.88149 6.98389 7.13420 7.35718 7.39506 7.47723 7.85802 8.18122 8.31641 8.64428 9.07503 9.63430 11.10177 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.006114 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.706133 B = 4578.355955 C = 5330.372667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 C -0.192 4.192 4 N -0.527 5.527 5 C 0.185 3.815 6 C -0.501 4.501 7 H 0.059 0.941 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.085 3.915 15 H 0.070 0.930 16 C -0.163 4.163 17 C -0.098 4.098 18 C -0.125 4.125 19 H 0.077 0.923 20 C 0.054 3.946 21 N -0.689 5.689 22 C 0.053 3.947 23 C -0.105 4.105 24 H 0.072 0.928 25 C -0.096 4.096 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.003 0.997 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.335 0.665 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 1.409 5.677 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 C -0.250 4.250 4 N -0.250 5.250 5 C 0.060 3.940 6 C -0.539 4.539 7 H 0.077 0.923 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.024 4.024 15 H 0.088 0.912 16 C -0.202 4.202 17 C -0.137 4.137 18 C -0.145 4.145 19 H 0.095 0.905 20 C -0.075 4.075 21 N -0.316 5.316 22 C -0.076 4.076 23 C -0.125 4.125 24 H 0.090 0.910 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.020 0.980 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.471 0.701 5.734 13.744 hybrid contribution 1.739 0.978 -0.856 2.171 sum -10.732 1.679 4.878 11.908 Atomic orbital electron populations 1.22191 0.96917 1.01399 1.00811 1.21431 0.92345 0.92757 0.95277 1.22800 1.03465 0.97478 1.01226 1.62654 1.03886 1.56621 1.01832 1.19890 0.82478 0.94456 0.97129 1.21124 0.90821 1.37365 1.04619 0.92309 1.24947 0.98278 0.95579 0.95737 1.69939 1.13743 1.43186 1.27126 0.86637 0.79880 0.79236 0.82108 1.20391 1.21475 1.20267 1.21601 0.97307 0.91980 0.91524 0.91159 1.22724 1.01215 0.99366 0.96903 1.21272 0.99109 0.98482 0.94858 1.22536 1.00567 0.96391 0.94988 0.90468 1.22632 1.00305 0.90581 0.94006 1.62491 1.43349 1.09337 1.16434 1.22327 0.99972 0.95771 0.89518 1.21979 1.00563 0.94834 0.95098 0.90968 1.21201 0.99225 0.99870 0.93107 0.92678 0.93365 0.92531 0.90692 0.90404 0.94536 0.91827 0.97986 0.94963 0.93042 0.90956 0.90982 0.92223 0.92497 0.91816 0.90655 0.84995 0.90802 0.92757 0.90987 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 7.78 37.16 0.29 -2.05 16 2 C 0.09 1.70 2.81 -67.71 -0.19 1.51 16 3 C -0.19 -3.60 7.47 37.16 0.28 -3.32 16 4 N -0.53 -10.82 4.66 -220.44 -1.03 -11.85 16 5 C 0.19 4.56 3.29 -4.98 -0.02 4.54 16 6 C -0.50 -13.69 7.93 -34.44 -0.27 -13.96 16 7 H 0.06 1.62 7.21 -52.49 -0.38 1.24 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.09 1.45 1.69 -67.96 -0.11 1.33 16 15 H 0.07 1.13 5.67 -51.93 -0.29 0.83 16 16 C -0.16 -2.61 3.20 -26.56 -0.09 -2.70 16 17 C -0.10 -1.30 5.71 -27.01 -0.15 -1.45 16 18 C -0.13 -1.66 2.50 -89.90 -0.22 -1.88 16 19 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 20 C 0.05 0.62 7.22 -2.58 -0.02 0.60 16 21 N -0.69 -8.28 7.48 -111.09 -0.83 -9.11 16 22 C 0.05 0.67 7.31 -3.19 -0.02 0.65 16 23 C -0.10 -1.43 2.29 -90.36 -0.21 -1.64 16 24 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16 25 C -0.10 -1.59 4.90 -27.52 -0.13 -1.73 16 26 H 0.05 0.78 5.21 -51.93 -0.27 0.51 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 29 H 0.07 1.52 7.61 -51.93 -0.40 1.13 16 30 H 0.08 1.73 6.50 -51.92 -0.34 1.39 16 31 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.06 1.17 3.83 -51.93 -0.20 0.97 16 33 H 0.00 0.07 4.56 -51.93 -0.24 -0.17 16 34 H 0.03 0.87 5.97 -51.92 -0.31 0.56 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.14 4.16 -51.93 -0.22 0.93 16 37 H 0.07 1.37 6.04 -51.93 -0.31 1.06 16 38 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.34 3.62 8.93 -39.29 -0.35 3.26 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.07 1.39 6.11 -51.93 -0.32 1.07 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -28.08 322.62 -10.03 -38.11 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.77 Total: 5.59 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.97 Total: -18.64 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -1.12 Total: -46.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.08 -10.03 -38.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.450 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds