Wall clock time and date at job start Mon Mar 30 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46725 * 2 1 4 4 N 1.46896 * 109.47046 * 119.99896 * 2 1 3 5 5 C 1.46897 * 110.99797 * 203.21145 * 4 2 1 6 6 C 1.50697 * 109.47378 * 293.47764 * 5 4 2 7 7 H 1.08002 * 119.99621 * 4.44062 * 6 5 4 8 8 C 1.37874 * 120.00429 * 184.44300 * 6 5 4 9 9 N 1.31518 * 119.99747 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00343 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46920 * 59.99838 * 10 8 6 12 12 H 1.48501 * 109.47264 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46796 * 299.99719 * 10 8 6 14 14 C 1.46904 * 111.00253 * 327.16515 * 4 2 1 15 15 H 1.09004 * 109.03080 * 52.03686 * 14 4 2 16 16 C 1.52523 * 109.04476 * 293.07124 * 14 4 2 17 17 C 1.53804 * 111.69121 * 185.42173 * 16 14 4 18 18 C 1.51627 * 107.04099 * 57.55432 * 17 16 14 19 19 H 1.08997 * 110.49698 * 55.22926 * 18 17 16 20 20 C 1.53068 * 116.62622 * 183.69824 * 18 17 16 21 21 N 1.49069 * 103.41553 * 155.97029 * 20 18 17 22 22 C 1.48650 * 108.29730 * 335.64375 * 21 20 18 23 23 C 1.52335 * 105.83756 * 356.79846 * 22 21 20 24 24 H 1.09005 * 109.87600 * 272.32350 * 23 22 21 25 25 C 1.51451 * 117.73634 * 145.57461 * 23 22 21 26 26 H 1.08996 * 109.47179 * 306.06648 * 1 2 3 27 27 H 1.09002 * 109.47114 * 66.06381 * 1 2 3 28 28 H 1.08998 * 109.47198 * 186.06548 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99998 * 2 1 3 30 30 H 1.09007 * 109.46796 * 192.45409 * 3 2 1 31 31 H 1.08997 * 109.47323 * 312.44991 * 3 2 1 32 32 H 1.08996 * 109.47343 * 72.45834 * 3 2 1 33 33 H 1.09001 * 109.47395 * 53.47948 * 5 4 2 34 34 H 1.09011 * 109.46956 * 173.47927 * 5 4 2 35 35 H 0.96999 * 120.00201 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.03967 * 64.84977 * 16 14 4 37 37 H 1.09001 * 108.97646 * 305.95011 * 16 14 4 38 38 H 1.09002 * 109.94230 * 298.17183 * 17 16 14 39 39 H 1.09003 * 109.94473 * 176.93631 * 17 16 14 40 40 H 1.09008 * 110.63002 * 274.44530 * 20 18 17 41 41 H 1.08993 * 110.63516 * 37.48462 * 20 18 17 42 42 H 1.00903 * 111.00150 * 97.73710 * 21 20 18 43 43 H 1.09007 * 110.17709 * 237.70837 * 22 21 20 44 44 H 1.09007 * 110.17789 * 115.89344 * 22 21 20 45 45 H 1.08998 * 109.93543 * 300.36447 * 25 23 22 46 46 H 1.08993 * 109.93845 * 61.59231 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3835 -0.2624 1.5356 6 6 4.3337 -0.7176 0.4582 7 1 3.9531 -1.2078 -0.4257 8 6 5.6890 -0.5084 0.6008 9 7 6.1526 0.0880 1.6774 10 14 6.8670 -1.0732 -0.7344 11 1 6.5313 -0.3928 -2.0109 12 1 8.2585 -0.7326 -0.3434 13 1 6.7475 -2.5429 -0.9105 14 6 1.1088 -0.4887 2.3338 15 1 0.0958 -0.7502 2.0276 16 6 1.1420 0.9808 2.7410 17 6 0.3114 1.2380 4.0097 18 6 0.8736 0.3441 5.0977 19 1 1.9420 0.5202 5.2223 20 6 0.1454 0.3612 6.4440 21 7 0.4982 -0.9566 7.0449 22 6 0.8420 -1.8944 5.9439 23 6 0.6070 -1.1226 4.6518 24 1 -0.4312 -1.2321 4.3383 25 6 1.5296 -1.4049 3.4844 26 1 -0.3633 0.6050 0.8307 27 1 -0.3633 0.4169 -0.9393 28 1 -0.3633 -1.0219 0.1086 29 1 1.8934 -0.5138 -0.8900 30 1 3.1072 1.4506 -0.2216 31 1 1.5071 2.0162 -0.7582 32 1 1.8690 1.8883 0.9798 33 1 3.4136 0.8245 1.6111 34 1 3.6781 -0.7012 2.4891 35 1 7.1060 0.2356 1.7777 36 1 0.7428 1.5848 1.9261 37 1 2.1753 1.2737 2.9272 38 1 -0.7338 0.9884 3.8267 39 1 0.3986 2.2835 4.3056 40 1 0.5102 1.1775 7.0676 41 1 -0.9316 0.4404 6.2972 42 1 1.2651 -0.8644 7.6941 43 1 0.1954 -2.7711 5.9811 44 1 1.8875 -2.1941 6.0181 45 1 2.5602 -1.1865 3.7639 46 1 1.4385 -2.4483 3.1825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401177885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:39 Heat of formation + Delta-G solvation = -6.731797 kcal Electronic energy + Delta-G solvation = -22313.010277 eV Core-core repulsion = 19429.566442 eV Total energy + Delta-G solvation = -2883.443836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60264 -39.41022 -35.42491 -34.75099 -32.95408 -31.65337 -30.19361 -29.00608 -27.62889 -27.24545 -24.30041 -24.10162 -22.04769 -21.75967 -20.83413 -19.87281 -18.30641 -17.34667 -16.87824 -16.33162 -16.08653 -15.86061 -15.70005 -15.23982 -14.87670 -14.76520 -14.06861 -13.85489 -13.54419 -13.41259 -13.30765 -13.16230 -13.05498 -12.89834 -12.69692 -12.58091 -12.38725 -12.25709 -12.22174 -11.91011 -11.74541 -11.68236 -11.61866 -11.31769 -11.01100 -10.89996 -10.62962 -10.52384 -9.44764 -8.74565 -8.16559 -6.23897 1.37848 1.40126 1.47730 2.40190 3.14119 3.19913 3.34759 3.58884 3.68798 3.90832 4.09936 4.21081 4.25115 4.31052 4.38795 4.50475 4.51698 4.59886 4.62458 4.65716 4.70328 4.72535 4.81347 4.84980 4.91005 4.98579 5.00091 5.01871 5.11527 5.18678 5.23060 5.25149 5.32340 5.35832 5.40935 5.47710 5.52547 5.59274 5.65797 5.72894 5.78379 6.16832 6.43458 6.54195 6.83816 6.93534 7.44388 8.93141 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.006114 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.706133 B = 4578.355955 C = 5330.372667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 C -0.182 4.182 4 N -0.540 5.540 5 C 0.210 3.790 6 C -0.513 4.513 7 H 0.053 0.947 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.958 3.042 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.085 3.915 15 H 0.094 0.906 16 C -0.154 4.154 17 C -0.090 4.090 18 C -0.122 4.122 19 H 0.047 0.953 20 C 0.060 3.940 21 N -0.689 5.689 22 C 0.054 3.946 23 C -0.098 4.098 24 H 0.088 0.912 25 C -0.090 4.090 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.065 0.935 33 H -0.016 1.016 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.342 0.658 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 1.565 5.537 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.241 4.241 4 N -0.263 5.263 5 C 0.083 3.917 6 C -0.551 4.551 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.783 3.217 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.197 1.197 14 C -0.023 4.023 15 H 0.112 0.888 16 C -0.193 4.193 17 C -0.129 4.129 18 C -0.142 4.142 19 H 0.066 0.934 20 C -0.069 4.069 21 N -0.317 5.317 22 C -0.075 4.075 23 C -0.118 4.118 24 H 0.106 0.894 25 C -0.129 4.129 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.001 0.999 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.157 0.843 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.989 0.855 5.593 16.021 hybrid contribution 2.516 0.918 -0.815 2.800 sum -12.473 1.774 4.778 13.474 Atomic orbital electron populations 1.22084 0.93165 1.02295 1.02626 1.21488 0.95298 0.91979 0.93488 1.22675 1.00953 0.98226 1.02198 1.62493 1.02742 1.57229 1.03876 1.19409 0.84730 0.92748 0.94764 1.21443 0.91763 1.36968 1.04955 0.92911 1.25775 1.00065 0.95693 0.97911 1.70071 1.14032 1.44415 1.28977 0.85610 0.77657 0.78903 0.79498 1.19493 1.20991 1.19682 1.21713 0.97315 0.92868 0.90402 0.88774 1.22570 0.99488 0.98356 0.98872 1.21238 0.99557 0.99220 0.92873 1.22477 0.99203 0.96099 0.96413 0.93433 1.22655 1.00717 0.90743 0.92747 1.62529 1.43612 1.09466 1.16066 1.22304 0.99609 0.96227 0.89312 1.21899 1.00219 0.95379 0.94301 0.89399 1.21097 0.97851 0.99375 0.94550 0.91415 0.91125 0.91934 0.92839 0.94720 0.91703 0.91649 0.99858 0.98210 0.93041 0.90294 0.95051 0.89789 0.91282 0.90480 0.89343 0.84307 0.89818 0.93894 0.94875 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 7.78 71.98 0.56 -3.35 16 2 C 0.09 3.19 2.81 44.92 0.13 3.32 16 3 C -0.18 -6.89 7.47 71.98 0.54 -6.35 16 4 N -0.54 -22.72 4.66 -851.35 -3.97 -26.68 16 5 C 0.21 10.92 3.29 85.56 0.28 11.20 16 6 C -0.51 -29.22 7.93 25.60 0.20 -29.01 16 7 H 0.05 3.00 7.21 -2.91 -0.02 2.98 16 8 C 0.00 0.18 5.46 84.65 0.46 0.64 16 9 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.09 2.88 1.69 44.75 0.08 2.95 16 15 H 0.09 2.77 5.67 -2.39 -0.01 2.76 16 16 C -0.15 -4.87 3.20 30.71 0.10 -4.78 16 17 C -0.09 -2.18 5.71 30.41 0.17 -2.00 16 18 C -0.12 -3.10 2.50 -10.33 -0.03 -3.13 16 19 H 0.05 1.49 8.02 -2.39 -0.02 1.47 16 20 C 0.06 1.24 7.22 85.90 0.62 1.86 16 21 N -0.69 -15.24 7.48 -505.37 -3.78 -19.02 16 22 C 0.05 1.33 7.31 85.74 0.63 1.96 16 23 C -0.10 -2.57 2.29 -10.63 -0.02 -2.60 16 24 H 0.09 2.09 7.94 -2.38 -0.02 2.07 16 25 C -0.09 -3.07 4.90 30.08 0.15 -2.92 16 26 H 0.07 1.67 5.21 -2.39 -0.01 1.66 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.64 7.71 -2.39 -0.02 1.62 16 29 H 0.05 2.20 7.61 -2.39 -0.02 2.18 16 30 H 0.03 1.58 6.50 -2.38 -0.02 1.57 16 31 H 0.06 2.03 8.09 -2.39 -0.02 2.01 16 32 H 0.06 2.43 3.83 -2.39 -0.01 2.42 16 33 H -0.02 -0.89 4.56 -2.39 -0.01 -0.90 16 34 H 0.00 -0.01 5.97 -2.38 -0.01 -0.02 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.08 2.37 4.16 -2.38 -0.01 2.36 16 37 H 0.03 1.24 6.04 -2.39 -0.01 1.23 16 38 H 0.08 1.69 7.99 -2.39 -0.02 1.67 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.34 6.90 8.93 -89.69 -0.80 6.10 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.04 1.13 8.09 -2.38 -0.02 1.11 16 45 H 0.03 1.37 6.11 -2.39 -0.01 1.36 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -63.50 322.62 -1.41 -64.91 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.17 Total: 22.18 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.86 Total: -32.22 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -7.46 Total: -102.13 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -63.50 -1.41 -64.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401177885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.173 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds