Wall clock time and date at job start Mon Mar 30 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00088 * 2 1 4 4 C 1.52995 * 109.47206 * 184.82144 * 3 2 1 5 5 N 1.46905 * 109.46869 * 69.16255 * 4 3 2 6 6 C 1.46897 * 111.00110 * 55.59855 * 5 4 3 7 7 C 1.50704 * 109.47392 * 67.75383 * 6 5 4 8 8 H 1.08005 * 119.99612 * 5.04829 * 7 6 5 9 9 C 1.37870 * 120.00082 * 185.04972 * 7 6 5 10 10 N 1.31510 * 120.00313 * 5.08651 * 9 7 6 11 11 Si 1.86810 * 119.99790 * 185.08394 * 9 7 6 12 12 H 1.48495 * 109.47077 * 65.00011 * 11 9 7 13 13 H 1.48496 * 109.46792 * 185.00236 * 11 9 7 14 14 H 1.48502 * 109.47134 * 304.99990 * 11 9 7 15 15 C 1.46901 * 111.00003 * 291.64150 * 5 4 3 16 16 C 1.52995 * 109.47190 * 278.09202 * 15 5 4 17 17 C 1.47200 * 110.43860 * 306.35459 * 16 15 5 18 18 N 5.89144 * 157.28250 * 240.81358 * 2 1 3 19 19 C 1.54891 * 110.59978 * 68.97224 * 16 15 5 20 20 C 1.54885 * 102.75140 * 156.67281 * 19 16 15 21 21 C 1.54268 * 104.19582 * 322.05976 * 20 19 16 22 22 C 1.53876 * 106.59716 * 23.60937 * 21 20 19 23 23 H 1.09004 * 109.46849 * 304.95210 * 1 2 3 24 24 H 1.08994 * 109.46991 * 64.94802 * 1 2 3 25 25 H 1.08999 * 109.47159 * 184.95718 * 1 2 3 26 26 H 1.08997 * 109.47122 * 64.82493 * 3 2 1 27 27 H 1.08997 * 109.47145 * 304.82796 * 3 2 1 28 28 H 1.08997 * 109.47744 * 309.16379 * 4 3 2 29 29 H 1.09007 * 109.47488 * 189.15661 * 4 3 2 30 30 H 1.08998 * 109.47226 * 187.75597 * 6 5 4 31 31 H 1.09004 * 109.47201 * 307.75559 * 6 5 4 32 32 H 0.96998 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.46856 * 158.08864 * 15 5 4 34 34 H 1.09000 * 109.46591 * 38.09166 * 15 5 4 35 35 H 1.09002 * 110.75924 * 274.98981 * 19 16 15 36 36 H 1.09010 * 110.75740 * 38.36118 * 19 16 15 37 37 H 1.09003 * 110.48827 * 203.37657 * 20 19 16 38 38 H 1.09002 * 110.48608 * 80.73458 * 20 19 16 39 39 H 1.09002 * 110.03303 * 264.32163 * 21 20 19 40 40 H 1.09000 * 110.02878 * 142.89251 * 21 20 19 41 41 H 1.09007 * 110.02928 * 240.71655 * 22 21 20 42 42 H 1.08995 * 110.03179 * 119.28714 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1212 5 7 3.8786 0.7020 -1.4637 6 6 3.3051 1.5692 -2.5015 7 6 3.9801 2.9160 -2.4603 8 1 4.8120 3.0828 -1.7919 9 6 3.5358 3.9350 -3.2758 10 7 2.4621 3.7645 -4.0157 11 14 4.4591 5.5582 -3.3295 12 1 5.8144 5.3382 -3.8949 13 1 3.7173 6.5214 -4.1822 14 1 4.5792 6.1051 -1.9541 15 6 3.4518 -0.6916 -1.6472 16 6 4.4927 -1.6289 -1.0318 17 6 5.8308 -1.3358 -1.5705 18 7 6.8634 -1.1095 -1.9863 19 6 4.4912 -1.5063 0.5123 20 6 5.0889 -2.8620 0.9635 21 6 4.4947 -3.8855 -0.0260 22 6 4.1156 -3.1015 -1.2946 23 1 -0.3633 0.5888 0.8423 24 1 -0.3633 0.4351 -0.9309 25 1 -0.3633 -1.0238 0.0888 26 1 1.7587 1.8151 0.9300 27 1 1.6219 1.8761 -0.8436 28 1 3.9012 0.4846 0.6257 29 1 3.9857 2.1639 0.0414 30 1 3.4592 1.1153 -3.4804 31 1 2.2369 1.6926 -2.3224 32 1 2.1498 4.4813 -4.5897 33 1 3.3552 -0.9048 -2.7118 34 1 2.4903 -0.8446 -1.1573 35 1 5.1235 -0.6789 0.8347 36 1 3.4754 -1.3873 0.8894 37 1 4.7814 -3.0941 1.9832 38 1 6.1761 -2.8441 0.8867 39 1 3.6077 -4.3500 0.4049 40 1 5.2365 -4.6473 -0.2656 41 1 3.0446 -3.1854 -1.4793 42 1 4.6734 -3.4828 -2.1498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405172950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:03 Heat of formation + Delta-G solvation = -14.205231 kcal Electronic energy + Delta-G solvation = -21576.210481 eV Core-core repulsion = 18556.609479 eV Total energy + Delta-G solvation = -3019.601003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53610 -37.77238 -35.62949 -35.14091 -32.57977 -30.57031 -29.07376 -28.51770 -26.53883 -26.05973 -23.46482 -22.95840 -21.67812 -20.32938 -19.67171 -16.89811 -16.36592 -16.14194 -15.77978 -15.23866 -15.04334 -14.56998 -14.18961 -13.88193 -13.65446 -13.55698 -12.80153 -12.70552 -12.38642 -12.27814 -11.77289 -11.58711 -11.51878 -11.30320 -11.26078 -11.18534 -11.01452 -10.95410 -10.80527 -10.67227 -10.51842 -10.39858 -10.25577 -9.99577 -9.78989 -9.18968 -9.00932 -8.42341 -7.11716 -6.03467 -4.03803 3.33208 3.37547 3.37793 3.41795 3.47147 4.08487 4.41444 4.44280 4.67558 4.72899 5.00470 5.09685 5.31783 5.45885 5.47834 5.55521 5.58426 5.60488 5.70870 5.79067 5.82204 5.84872 5.89623 5.92100 5.94294 6.00207 6.08943 6.23993 6.30184 6.31856 6.39570 6.46417 6.69259 6.76420 7.27306 7.38135 7.52222 7.81359 8.10235 8.20036 8.25957 8.55779 9.04398 9.60460 11.06672 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.006469 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.326987 B = 4327.258427 C = 5197.930103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.017 3.983 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.189 3.811 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.043 3.957 16 C 0.040 3.960 17 C 0.245 3.755 18 N -0.454 5.454 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.110 4.110 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.022 0.978 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 -12.666 10.620 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.304 6.304 3 C -0.060 4.060 4 C -0.073 4.073 5 N -0.255 5.255 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.079 0.921 9 C -0.144 4.144 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.086 4.086 16 C 0.036 3.964 17 C -0.073 4.073 18 N -0.129 5.129 19 C -0.146 4.146 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.150 4.150 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.749 -12.361 9.776 15.856 hybrid contribution -1.033 1.278 -0.063 1.644 sum -2.782 -11.083 9.713 14.997 Atomic orbital electron populations 1.22693 0.82552 1.01706 0.99945 1.87796 1.18721 1.28983 1.94871 1.23569 0.97271 0.84359 1.00850 1.22503 0.90293 1.02059 0.92481 1.62168 1.59484 1.00859 1.03038 1.19832 0.93773 0.91184 0.88766 1.21128 1.15722 0.95276 1.22328 0.92078 1.24950 0.94918 0.98745 0.95801 1.69941 1.22763 1.33511 1.27650 0.86620 0.80070 0.83143 0.77948 1.20298 1.21427 1.20232 1.22665 0.96301 0.89240 1.00401 1.19104 0.85341 0.95996 0.95973 1.28602 0.93883 0.91890 0.92917 1.81080 1.13157 1.09431 1.09252 1.22784 1.02686 0.97025 0.92093 1.22458 1.00145 0.95235 0.98902 1.22125 1.00591 0.97877 0.95386 1.22206 1.02392 0.92080 0.98278 0.94675 0.94147 0.90380 0.94270 0.90767 0.90486 0.89201 0.95988 0.97503 0.92942 0.91768 0.88490 0.90503 0.88745 0.91410 0.92040 0.91439 0.92082 0.89871 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.68 7.07 -35.23 -0.25 -5.93 16 3 C 0.02 0.28 5.77 37.15 0.21 0.50 16 4 C 0.06 0.98 5.49 -3.82 -0.02 0.96 16 5 N -0.53 -10.83 4.00 -236.07 -0.94 -11.78 16 6 C 0.19 4.72 4.42 -4.98 -0.02 4.70 16 7 C -0.51 -13.93 8.50 -34.44 -0.29 -14.22 16 8 H 0.06 1.70 7.41 -52.48 -0.39 1.31 16 9 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 10 N -0.90 -26.20 13.28 55.43 0.74 -25.46 16 11 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.04 0.73 3.97 -3.83 -0.02 0.71 16 16 C 0.04 0.58 0.64 -155.64 -0.10 0.48 16 17 C 0.24 4.41 13.00 -20.76 -0.27 4.14 16 18 N -0.45 -9.39 18.54 42.15 0.78 -8.61 16 19 C -0.11 -1.33 3.86 -24.74 -0.10 -1.43 16 20 C -0.13 -1.35 6.59 -25.07 -0.17 -1.51 16 21 C -0.12 -1.17 6.80 -25.61 -0.17 -1.35 16 22 C -0.11 -1.25 5.91 -25.61 -0.15 -1.40 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.50 5.69 -51.93 -0.30 1.20 16 28 H 0.08 1.18 3.88 -51.93 -0.20 0.98 16 29 H 0.09 1.75 7.21 -51.93 -0.37 1.37 16 30 H 0.02 0.61 7.75 -51.93 -0.40 0.20 16 31 H 0.01 0.19 5.61 -51.93 -0.29 -0.10 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.15 7.60 -51.93 -0.39 0.76 16 34 H 0.10 1.54 4.27 -52.11 -0.22 1.32 16 35 H 0.08 1.04 6.80 -51.93 -0.35 0.69 16 36 H 0.09 1.12 7.14 -51.92 -0.37 0.75 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.84 7.84 -51.92 -0.41 0.43 16 42 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -30.77 327.63 -6.46 -37.23 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.62 Total: -1.65 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.08 Total: -5.48 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.57 Total: -45.84 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.25 Total: -5.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.77 -6.46 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405172950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.029 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds