Wall clock time and date at job start Mon Mar 30 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00088 * 2 1 4 4 C 1.52995 * 109.47206 * 184.82144 * 3 2 1 5 5 N 1.46905 * 109.46869 * 69.16255 * 4 3 2 6 6 C 1.46897 * 111.00110 * 55.59855 * 5 4 3 7 7 C 1.50704 * 109.47392 * 67.75383 * 6 5 4 8 8 H 1.08005 * 119.99612 * 5.04829 * 7 6 5 9 9 C 1.37870 * 120.00082 * 185.04972 * 7 6 5 10 10 N 1.31510 * 120.00313 * 5.08651 * 9 7 6 11 11 Si 1.86810 * 119.99790 * 185.08394 * 9 7 6 12 12 H 1.48495 * 109.47077 * 65.00011 * 11 9 7 13 13 H 1.48496 * 109.46792 * 185.00236 * 11 9 7 14 14 H 1.48502 * 109.47134 * 304.99990 * 11 9 7 15 15 C 1.46901 * 111.00003 * 291.64150 * 5 4 3 16 16 C 1.52995 * 109.47190 * 278.09202 * 15 5 4 17 17 C 1.47200 * 110.43860 * 306.35459 * 16 15 5 18 18 N 5.89144 * 157.28250 * 240.81358 * 2 1 3 19 19 C 1.54891 * 110.59978 * 68.97224 * 16 15 5 20 20 C 1.54885 * 102.75140 * 156.67281 * 19 16 15 21 21 C 1.54268 * 104.19582 * 322.05976 * 20 19 16 22 22 C 1.53876 * 106.59716 * 23.60937 * 21 20 19 23 23 H 1.09004 * 109.46849 * 304.95210 * 1 2 3 24 24 H 1.08994 * 109.46991 * 64.94802 * 1 2 3 25 25 H 1.08999 * 109.47159 * 184.95718 * 1 2 3 26 26 H 1.08997 * 109.47122 * 64.82493 * 3 2 1 27 27 H 1.08997 * 109.47145 * 304.82796 * 3 2 1 28 28 H 1.08997 * 109.47744 * 309.16379 * 4 3 2 29 29 H 1.09007 * 109.47488 * 189.15661 * 4 3 2 30 30 H 1.08998 * 109.47226 * 187.75597 * 6 5 4 31 31 H 1.09004 * 109.47201 * 307.75559 * 6 5 4 32 32 H 0.96998 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.46856 * 158.08864 * 15 5 4 34 34 H 1.09000 * 109.46591 * 38.09166 * 15 5 4 35 35 H 1.09002 * 110.75924 * 274.98981 * 19 16 15 36 36 H 1.09010 * 110.75740 * 38.36118 * 19 16 15 37 37 H 1.09003 * 110.48827 * 203.37657 * 20 19 16 38 38 H 1.09002 * 110.48608 * 80.73458 * 20 19 16 39 39 H 1.09002 * 110.03303 * 264.32163 * 21 20 19 40 40 H 1.09000 * 110.02878 * 142.89251 * 21 20 19 41 41 H 1.09007 * 110.02928 * 240.71655 * 22 21 20 42 42 H 1.08995 * 110.03179 * 119.28714 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1212 5 7 3.8786 0.7020 -1.4637 6 6 3.3051 1.5692 -2.5015 7 6 3.9801 2.9160 -2.4603 8 1 4.8120 3.0828 -1.7919 9 6 3.5358 3.9350 -3.2758 10 7 2.4621 3.7645 -4.0157 11 14 4.4591 5.5582 -3.3295 12 1 5.8144 5.3382 -3.8949 13 1 3.7173 6.5214 -4.1822 14 1 4.5792 6.1051 -1.9541 15 6 3.4518 -0.6916 -1.6472 16 6 4.4927 -1.6289 -1.0318 17 6 5.8308 -1.3358 -1.5705 18 7 6.8634 -1.1095 -1.9863 19 6 4.4912 -1.5063 0.5123 20 6 5.0889 -2.8620 0.9635 21 6 4.4947 -3.8855 -0.0260 22 6 4.1156 -3.1015 -1.2946 23 1 -0.3633 0.5888 0.8423 24 1 -0.3633 0.4351 -0.9309 25 1 -0.3633 -1.0238 0.0888 26 1 1.7587 1.8151 0.9300 27 1 1.6219 1.8761 -0.8436 28 1 3.9012 0.4846 0.6257 29 1 3.9857 2.1639 0.0414 30 1 3.4592 1.1153 -3.4804 31 1 2.2369 1.6926 -2.3224 32 1 2.1498 4.4813 -4.5897 33 1 3.3552 -0.9048 -2.7118 34 1 2.4903 -0.8446 -1.1573 35 1 5.1235 -0.6789 0.8347 36 1 3.4754 -1.3873 0.8894 37 1 4.7814 -3.0941 1.9832 38 1 6.1761 -2.8441 0.8867 39 1 3.6077 -4.3500 0.4049 40 1 5.2365 -4.6473 -0.2656 41 1 3.0446 -3.1854 -1.4793 42 1 4.6734 -3.4828 -2.1498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405172950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:03 Heat of formation + Delta-G solvation = -33.714395 kcal Electronic energy + Delta-G solvation = -21577.056462 eV Core-core repulsion = 18556.609479 eV Total energy + Delta-G solvation = -3020.446983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78765 -38.98514 -37.09603 -36.55643 -34.64266 -31.79770 -30.52991 -29.55057 -28.29011 -27.14490 -24.83641 -24.76178 -22.88754 -21.26886 -21.18188 -18.49682 -18.01365 -17.43619 -17.15405 -16.74262 -16.27072 -15.98978 -15.47430 -15.25496 -14.99940 -14.82539 -14.37284 -14.04574 -13.99253 -13.49505 -13.21055 -13.08290 -12.97637 -12.90243 -12.79521 -12.55359 -12.47574 -12.20773 -12.05381 -11.98551 -11.93051 -11.71817 -11.44657 -11.32253 -11.16187 -10.99601 -10.64486 -10.29152 -8.76017 -8.19151 -6.27475 1.37018 1.40407 1.47538 1.96730 2.03109 2.38603 2.85666 3.12591 3.18462 3.39853 3.77925 3.81897 4.09991 4.29400 4.42550 4.46009 4.49407 4.55737 4.64142 4.66542 4.69940 4.71976 4.80984 4.87983 4.93028 4.99427 5.04872 5.18588 5.20285 5.26384 5.29212 5.34720 5.41398 5.47132 5.48155 5.60786 5.68330 6.11003 6.27474 6.44489 6.71339 6.84110 6.89884 7.41450 8.89867 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.006469 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.326987 B = 4327.258427 C = 5197.930103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.031 3.969 4 C 0.055 3.945 5 N -0.546 5.546 6 C 0.207 3.793 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.957 3.043 12 H -0.280 1.280 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.046 3.954 16 C 0.038 3.962 17 C 0.260 3.740 18 N -0.509 5.509 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.049 0.951 24 H 0.023 0.977 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.108 0.892 29 H 0.068 0.932 30 H -0.015 1.015 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.045 0.955 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -13.949 12.806 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C -0.047 4.047 4 C -0.073 4.073 5 N -0.269 5.269 6 C 0.081 3.919 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.190 4.190 10 N -0.570 5.570 11 Si 0.782 3.218 12 H -0.206 1.206 13 H -0.206 1.206 14 H -0.189 1.189 15 C -0.082 4.082 16 C 0.034 3.966 17 C -0.057 4.057 18 N -0.185 5.185 19 C -0.143 4.143 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.146 4.146 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.128 0.872 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.003 0.997 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.515 -13.661 11.982 18.345 hybrid contribution -0.856 1.629 -0.734 1.981 sum -3.371 -12.033 11.248 16.813 Atomic orbital electron populations 1.22900 0.80746 1.03915 0.99729 1.87722 1.20480 1.27471 1.94827 1.23226 0.96260 0.85067 1.00171 1.22530 0.91363 1.01788 0.91614 1.62058 1.59732 1.01944 1.03129 1.19420 0.92965 0.90902 0.88570 1.21409 1.15542 0.96656 1.22174 0.92810 1.25743 0.95638 1.02200 0.95429 1.70051 1.24022 1.34622 1.28306 0.85630 0.78426 0.79215 0.78518 1.20595 1.20648 1.18912 1.22720 0.98029 0.87614 0.99857 1.19383 0.82450 0.97471 0.97332 1.29395 0.94303 0.90366 0.91606 1.81076 1.15070 1.11261 1.11077 1.22786 1.03438 0.98110 0.89966 1.22437 0.99329 0.93909 1.00534 1.22133 1.01827 0.97448 0.93974 1.22261 1.03462 0.89557 0.99366 0.93213 0.95811 0.87229 0.92011 0.94827 0.87381 0.91325 0.99660 0.98860 0.92808 0.93646 0.86810 0.91854 0.87306 0.88878 0.93290 0.88908 0.91472 0.88059 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.75 16 2 O -0.39 -10.55 7.07 -148.98 -1.05 -11.61 16 3 C 0.03 1.00 5.77 71.98 0.42 1.42 16 4 C 0.05 1.94 5.49 86.30 0.47 2.42 16 5 N -0.55 -22.67 4.00 -900.78 -3.60 -26.27 16 6 C 0.21 10.82 4.42 85.56 0.38 11.20 16 7 C -0.52 -29.53 8.50 25.60 0.22 -29.31 16 8 H 0.05 3.07 7.41 -2.91 -0.02 3.05 16 9 C 0.01 0.47 5.45 84.65 0.46 0.93 16 10 N -0.93 -55.54 13.28 21.44 0.28 -55.25 16 11 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 15 C 0.05 1.56 3.97 86.30 0.34 1.90 16 16 C 0.04 1.05 0.64 -52.91 -0.03 1.01 16 17 C 0.26 9.41 13.00 89.44 1.16 10.58 16 18 N -0.51 -21.53 18.54 20.01 0.37 -21.16 16 19 C -0.10 -2.33 3.86 31.88 0.12 -2.20 16 20 C -0.12 -2.16 6.59 31.67 0.21 -1.96 16 21 C -0.12 -1.79 6.80 31.32 0.21 -1.57 16 22 C -0.11 -2.17 5.91 31.32 0.18 -1.98 16 23 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.39 5.69 -2.39 -0.01 1.38 16 28 H 0.11 3.13 3.88 -2.39 -0.01 3.12 16 29 H 0.07 2.70 7.21 -2.38 -0.02 2.69 16 30 H -0.01 -0.86 7.75 -2.39 -0.02 -0.88 16 31 H -0.01 -0.33 5.61 -2.38 -0.01 -0.35 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 34 H 0.11 3.45 4.27 -5.18 -0.02 3.43 16 35 H 0.06 1.59 6.80 -2.39 -0.02 1.58 16 36 H 0.11 2.16 7.14 -2.38 -0.02 2.14 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.70 7.84 -2.38 -0.02 1.69 16 42 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 Total: -1.00 -69.25 327.63 4.41 -64.84 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.99 Total: 8.07 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.40 Total: -5.82 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -2.95 Total: -102.68 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.05 Total: -11.61 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.25 4.41 -64.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405172950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.128 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds