Wall clock time and date at job start Mon Mar 30 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 H 1.08996 * 109.46937 * 305.71238 * 3 2 1 5 5 C 1.52997 * 109.47329 * 65.71747 * 3 2 1 6 6 N 1.46501 * 109.47007 * 185.00312 * 5 3 2 7 7 C 1.34429 * 126.82636 * 124.70821 * 6 5 3 8 8 N 1.30829 * 108.07517 * 179.88990 * 7 6 5 9 9 C 1.33247 * 109.83454 * 0.38360 * 8 7 6 10 10 N 1.30713 * 108.94087 * 359.76125 * 9 8 7 11 11 N 1.46899 * 109.46673 * 185.71671 * 3 2 1 12 12 C 1.46898 * 111.00046 * 85.73039 * 11 3 2 13 13 C 1.53009 * 109.47139 * 185.55228 * 12 11 3 14 14 C 1.52996 * 109.46823 * 299.99736 * 13 12 11 15 15 C 1.52995 * 109.46970 * 59.99747 * 13 12 11 16 16 C 1.50694 * 109.47268 * 179.97438 * 13 12 11 17 17 H 1.08001 * 120.00163 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00243 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99607 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00294 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47094 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46839 * 120.00470 * 20 18 16 23 23 H 1.48496 * 109.47586 * 240.00542 * 20 18 16 24 24 H 1.08999 * 109.47425 * 173.51607 * 1 2 3 25 25 H 1.08998 * 109.46660 * 53.51425 * 1 2 3 26 26 H 1.09002 * 109.47055 * 293.51921 * 1 2 3 27 27 H 1.09000 * 109.46539 * 119.99720 * 2 1 3 28 28 H 1.08995 * 109.47129 * 239.99398 * 2 1 3 29 29 H 1.09004 * 109.47070 * 304.99365 * 5 3 2 30 30 H 1.08994 * 109.47334 * 65.00008 * 5 3 2 31 31 H 1.08001 * 125.95892 * 0.03486 * 7 6 5 32 32 H 1.07997 * 125.52702 * 179.73050 * 9 8 7 33 33 H 1.00900 * 110.99629 * 209.67972 * 11 3 2 34 34 H 1.09001 * 109.47095 * 305.54689 * 12 11 3 35 35 H 1.09000 * 109.47264 * 65.55467 * 12 11 3 36 36 H 1.09008 * 109.47456 * 60.00000 * 14 13 12 37 37 H 1.09004 * 109.47044 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47612 * 299.99780 * 14 13 12 39 39 H 1.09001 * 109.47446 * 60.00428 * 15 13 12 40 40 H 1.09004 * 109.47002 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47428 * 299.99532 * 15 13 12 42 42 H 0.97002 * 119.99989 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9850 -0.8344 5 6 1.6508 2.1211 1.3148 6 7 2.0333 3.5345 1.2668 7 6 1.2303 4.5938 1.4671 8 7 1.9503 5.6787 1.3402 9 6 3.2101 5.3541 1.0521 10 7 3.3107 4.0521 0.9964 11 7 3.5025 1.4447 -0.1380 12 6 3.8981 1.3888 -1.5516 13 6 5.4189 1.2532 -1.6507 14 6 6.0830 2.4588 -0.9826 15 6 5.8635 -0.0297 -0.9456 16 6 5.8246 1.1953 -3.1009 17 1 5.0730 1.2502 -3.8745 18 6 7.1554 1.0733 -3.4401 19 7 8.0706 1.0070 -2.4980 20 14 7.6583 1.0008 -5.2376 21 1 6.4487 1.0938 -6.0942 22 1 8.5689 2.1335 -5.5429 23 1 8.3570 -0.2820 -5.5049 24 1 -0.3634 -1.0211 -0.1160 25 1 -0.3632 0.6111 -0.8263 26 1 -0.3633 0.4101 0.9423 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 0.5734 2.0411 1.4600 30 1 2.1661 1.6331 2.1421 31 1 0.1753 4.5557 1.6953 32 1 4.0171 6.0534 0.8904 33 1 3.9076 2.2477 0.3194 34 1 3.4250 0.5299 -2.0276 35 1 3.5813 2.3029 -2.0539 36 1 5.7895 2.5004 0.0664 37 1 7.1664 2.3620 -1.0528 38 1 5.7662 3.3729 -1.4849 39 1 5.3904 -0.8886 -1.4216 40 1 6.9470 -0.1261 -1.0158 41 1 5.5701 0.0118 0.1034 42 1 9.0069 0.9208 -2.7366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414162763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:29 Heat of formation + Delta-G solvation = 67.055622 kcal Electronic energy + Delta-G solvation = -21239.045561 eV Core-core repulsion = 18255.261044 eV Total energy + Delta-G solvation = -2983.784517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.99989 -39.25315 -37.30485 -34.37011 -33.78978 -32.25079 -31.92815 -28.88763 -27.50946 -27.26220 -25.87343 -24.69031 -22.91164 -22.83800 -21.19026 -20.32888 -18.35261 -17.91028 -17.16534 -16.64618 -16.31023 -16.10861 -15.67310 -15.15706 -14.88646 -14.76886 -14.54129 -14.18452 -13.84854 -13.66656 -13.29395 -13.12938 -12.97039 -12.80371 -12.58357 -12.45159 -12.27561 -12.18450 -12.07333 -11.93970 -11.55258 -11.30453 -11.00908 -10.92070 -10.79594 -10.63339 -10.52623 -10.36310 -9.14512 -7.98146 -6.15648 0.73725 1.38823 1.41246 1.44865 1.51269 2.02556 2.44436 3.23219 3.30513 3.51290 3.52992 3.92590 4.04578 4.15248 4.27087 4.41816 4.48536 4.56106 4.58573 4.66724 4.76741 4.86635 4.98683 5.00738 5.17094 5.26027 5.28826 5.30975 5.32133 5.41873 5.45548 5.50527 5.52849 5.67724 5.75370 5.96934 6.18732 6.25231 6.33309 6.49970 6.80859 6.94483 7.14482 7.51702 9.00359 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.005553 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.547443 B = 5040.858323 C = 5887.660252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.073 3.927 4 H 0.026 0.974 5 C 0.124 3.876 6 N -0.385 5.385 7 C 0.261 3.739 8 N -0.575 5.575 9 C 0.191 3.809 10 N -0.354 5.354 11 N -0.692 5.692 12 C 0.101 3.899 13 C 0.062 3.938 14 C -0.107 4.107 15 C -0.101 4.101 16 C -0.527 4.527 17 H 0.040 0.960 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.946 3.054 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.279 1.279 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.268 0.732 32 H 0.228 0.772 33 H 0.357 0.643 34 H 0.046 0.954 35 H -0.014 1.014 36 H 0.027 0.973 37 H 0.054 0.946 38 H 0.006 0.994 39 H 0.012 0.988 40 H 0.048 0.952 41 H 0.031 0.969 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 2.116 9.792 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.038 4.038 4 H 0.044 0.956 5 C 0.003 3.997 6 N -0.176 5.176 7 C -0.034 4.034 8 N -0.303 5.303 9 C -0.112 4.112 10 N -0.183 5.183 11 N -0.331 5.331 12 C -0.028 4.028 13 C 0.061 3.939 14 C -0.164 4.164 15 C -0.159 4.159 16 C -0.566 4.566 17 H 0.058 0.942 18 C -0.177 4.177 19 N -0.542 5.542 20 Si 0.772 3.228 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.205 1.205 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.173 0.827 30 H 0.117 0.883 31 H 0.283 0.717 32 H 0.244 0.756 33 H 0.183 0.817 34 H 0.064 0.936 35 H 0.004 0.996 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.419 1.303 9.814 19.173 hybrid contribution 0.494 0.796 -1.609 1.862 sum -15.925 2.099 8.205 18.037 Atomic orbital electron populations 1.21831 0.93306 1.02647 1.02750 1.21454 0.96697 0.93897 1.02487 1.21925 0.89247 0.97139 0.95462 0.95551 1.22493 1.04127 0.74253 0.98792 1.50807 1.05947 1.09153 1.51661 1.27011 1.00663 0.81056 0.94719 1.70537 1.03886 1.30468 1.25442 1.26386 0.95803 0.91506 0.97478 1.77746 1.02077 1.12703 1.25744 1.60790 1.07967 1.50075 1.14230 1.21683 0.97339 0.96135 0.87661 1.18112 0.89623 0.92713 0.93450 1.21517 1.02161 0.96623 0.96147 1.21421 1.00956 0.96711 0.96788 1.21437 0.92312 1.50193 0.92675 0.94173 1.25548 0.96661 0.94930 1.00517 1.69983 1.00726 1.50751 1.32746 0.85700 0.78015 0.77591 0.81450 1.19836 1.20779 1.20523 0.91776 0.93090 0.90044 0.90672 0.93737 0.82668 0.88265 0.71702 0.75589 0.81665 0.93596 0.99566 0.95439 0.92749 0.97500 0.96906 0.93328 0.94954 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.53 71.98 0.69 -1.43 16 2 C -0.11 -2.40 5.65 30.60 0.17 -2.22 16 3 C 0.07 1.94 2.32 44.91 0.10 2.05 16 4 H 0.03 0.79 7.84 -2.39 -0.02 0.77 16 5 C 0.12 2.29 5.98 86.38 0.52 2.80 16 6 N -0.38 -9.02 3.69 -352.07 -1.30 -10.32 16 7 C 0.26 4.91 12.63 180.36 2.28 7.19 16 8 N -0.58 -14.69 11.19 -204.00 -2.28 -16.97 16 9 C 0.19 5.39 13.03 180.76 2.36 7.74 16 10 N -0.35 -11.15 10.02 -61.24 -0.61 -11.77 16 11 N -0.69 -25.48 5.44 -491.57 -2.67 -28.15 16 12 C 0.10 4.53 4.35 86.31 0.38 4.91 16 13 C 0.06 3.17 0.57 -52.93 -0.03 3.14 16 14 C -0.11 -5.48 7.91 71.98 0.57 -4.91 16 15 C -0.10 -5.15 8.09 71.98 0.58 -4.57 16 16 C -0.53 -29.92 8.01 25.60 0.21 -29.72 16 17 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 18 C 0.02 1.26 5.15 84.65 0.44 1.70 16 19 N -0.90 -52.08 9.35 21.45 0.20 -51.88 16 20 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.68 6.80 -2.39 -0.02 0.67 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.26 7.34 -2.39 -0.02 1.24 16 29 H 0.16 1.25 6.46 -2.38 -0.02 1.24 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.27 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.23 5.29 8.06 -2.91 -0.02 5.26 16 33 H 0.36 13.72 3.76 -89.69 -0.34 13.39 16 34 H 0.05 2.07 7.31 -2.39 -0.02 2.05 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.03 1.30 6.71 -2.38 -0.02 1.28 16 37 H 0.05 3.06 6.07 -2.39 -0.01 3.04 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 2.71 6.07 -2.39 -0.01 2.70 16 41 H 0.03 1.52 7.60 -2.38 -0.02 1.50 16 42 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -70.85 328.88 4.27 -66.59 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.66 Total: 19.10 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 8.25 Total: -13.32 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -6.67 Total: -119.08 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.85 4.27 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.641 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds