Wall clock time and date at job start Mon Mar 30 2020 04:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46498 * 109.47234 * 119.99954 * 2 1 3 5 5 C 1.35490 * 126.98439 * 300.02892 * 4 2 1 6 6 N 1.30517 * 107.31348 * 179.97438 * 5 4 2 7 7 N 1.28600 * 109.67108 * 359.97438 * 6 5 4 8 8 C 1.30521 * 109.67346 * 359.72729 * 7 6 5 9 9 C 1.50700 * 126.35039 * 180.29947 * 8 7 6 10 10 N 1.46895 * 109.47025 * 270.16128 * 9 8 7 11 11 C 1.46909 * 110.99923 * 66.04376 * 10 9 8 12 12 C 1.46898 * 111.00140 * 189.99609 * 10 9 8 13 13 H 1.09001 * 109.47510 * 188.94694 * 12 10 9 14 14 C 1.53005 * 109.47283 * 308.94977 * 12 10 9 15 15 C 1.52998 * 109.46942 * 68.95095 * 12 10 9 16 16 C 1.50701 * 109.47293 * 62.98626 * 15 12 10 17 17 H 1.08000 * 119.99804 * 355.13756 * 16 15 12 18 18 C 1.37880 * 119.99969 * 175.13589 * 16 15 12 19 19 N 1.31514 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46915 * 89.99698 * 20 18 16 22 22 H 1.48494 * 109.46872 * 209.99892 * 20 18 16 23 23 H 1.48505 * 109.46995 * 330.00165 * 20 18 16 24 24 H 1.09003 * 109.47271 * 60.00361 * 1 2 3 25 25 H 1.08998 * 109.47272 * 299.99903 * 1 2 3 26 26 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47425 * 239.99980 * 2 1 3 28 28 H 1.08998 * 109.46897 * 59.99868 * 3 2 1 29 29 H 1.09003 * 109.47430 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47170 * 299.99795 * 3 2 1 31 31 H 1.08006 * 126.34062 * 0.02838 * 5 4 2 32 32 H 1.09002 * 109.47043 * 30.16256 * 9 8 7 33 33 H 1.09001 * 109.46974 * 150.15890 * 9 8 7 34 34 H 1.09002 * 109.46763 * 54.13508 * 11 10 9 35 35 H 1.08999 * 109.46958 * 174.12852 * 11 10 9 36 36 H 1.08992 * 109.46943 * 294.13574 * 11 10 9 37 37 H 1.09002 * 109.46826 * 59.99938 * 14 12 10 38 38 H 1.08998 * 109.47105 * 179.97438 * 14 12 10 39 39 H 1.09003 * 109.46652 * 300.00062 * 14 12 10 40 40 H 1.08996 * 109.47233 * 182.98966 * 15 12 10 41 41 H 1.09001 * 109.47127 * 302.98961 * 15 12 10 42 42 H 0.97001 * 120.00419 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7794 -0.3536 2.4865 6 7 2.3959 -1.2260 3.2364 7 7 3.0019 -2.0835 2.4939 8 6 2.7947 -1.8004 1.2367 9 6 3.3241 -2.5639 0.0502 10 7 4.6307 -2.0177 -0.3402 11 6 5.6347 -2.2565 0.7053 12 6 5.0695 -2.5720 -1.6279 13 1 6.1018 -2.2777 -1.8173 14 6 4.9740 -4.0985 -1.5852 15 6 4.1731 -2.0360 -2.7459 16 6 4.3231 -0.5392 -2.8360 17 1 4.9296 -0.0128 -2.1138 18 6 3.6862 0.1583 -3.8405 19 7 2.9481 -0.4827 -4.7202 20 14 3.8727 2.0136 -3.9526 21 1 5.0428 2.3427 -4.8056 22 1 2.6452 2.5993 -4.5486 23 1 4.0785 2.5734 -2.5926 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.1876 0.4817 2.8308 32 1 3.4342 -3.6156 0.3146 33 1 2.6273 -2.4697 -0.7827 34 1 5.6648 -3.3196 0.9441 35 1 6.6137 -1.9364 0.3487 36 1 5.3705 -1.6908 1.5987 37 1 3.9417 -4.3928 -1.3958 38 1 5.2992 -4.5097 -2.5408 39 1 5.6127 -4.4803 -0.7887 40 1 4.4648 -2.4881 -3.6938 41 1 3.1342 -2.2846 -2.5293 42 1 2.4997 0.0079 -5.4267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566740741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:29 Heat of formation + Delta-G solvation = 74.693918 kcal Electronic energy + Delta-G solvation = -21887.287050 eV Core-core repulsion = 18903.833755 eV Total energy + Delta-G solvation = -2983.453295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.78364 -37.95628 -36.31380 -33.15709 -31.71416 -31.05836 -29.99474 -27.43437 -27.20747 -27.01332 -24.33300 -23.35337 -22.60687 -21.24567 -20.08533 -18.77157 -16.83666 -16.28992 -15.83819 -15.31353 -15.13664 -14.67068 -14.22764 -14.06075 -13.91154 -13.15254 -13.00191 -12.76790 -12.47792 -12.31033 -12.23313 -11.94386 -11.72269 -11.49747 -11.37304 -11.18918 -11.11310 -10.85310 -10.80604 -10.71279 -10.52824 -10.12018 -9.99607 -9.79364 -9.33524 -9.11100 -8.85022 -8.39438 -7.63469 -6.02237 -4.00475 2.16613 2.84129 3.20190 3.25301 3.34083 3.36803 4.42164 4.48995 4.73401 4.81731 4.83862 5.03431 5.26090 5.33113 5.36162 5.56475 5.60010 5.64001 5.70113 5.81522 5.84685 5.89987 5.91090 5.98555 6.01049 6.04091 6.09473 6.36971 6.37920 6.43874 6.50855 6.55949 6.58387 6.85692 7.22916 7.40263 7.50645 7.72366 7.88158 7.99241 8.45712 9.07402 9.08949 9.61713 11.09127 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.008962 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.380199 B = 3123.721827 C = 4300.450263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 C -0.154 4.154 4 N -0.449 5.449 5 C 0.138 3.862 6 N -0.307 5.307 7 N -0.306 5.306 8 C 0.202 3.798 9 C 0.136 3.864 10 N -0.511 5.511 11 C 0.026 3.974 12 C 0.086 3.914 13 H 0.075 0.925 14 C -0.186 4.186 15 C 0.030 3.970 16 C -0.491 4.491 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.272 1.272 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.025 0.975 41 H 0.012 0.988 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -0.106 7.648 8.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.139 5.139 5 C -0.150 4.150 6 N -0.147 5.147 7 N -0.148 5.148 8 C -0.067 4.067 9 C 0.006 3.994 10 N -0.235 5.235 11 C -0.122 4.122 12 C -0.022 4.022 13 H 0.093 0.907 14 C -0.245 4.245 15 C -0.007 4.007 16 C -0.529 4.529 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.197 1.197 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.030 0.970 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.002 -0.242 8.649 9.158 hybrid contribution -0.392 1.055 -1.214 1.656 sum -3.394 0.813 7.435 8.213 Atomic orbital electron populations 1.22175 0.93581 1.02923 1.03133 1.21695 0.94664 0.94883 0.86564 1.22065 1.03265 0.93552 1.02274 1.46451 1.37498 1.21796 1.08177 1.26087 1.04903 1.03149 0.80818 1.74150 1.10689 1.02925 1.26959 1.74191 1.20073 1.21448 0.99051 1.24827 0.95824 0.89301 0.96710 1.20445 0.93414 0.94243 0.91260 1.62088 1.00499 1.58172 1.02745 1.22383 0.95595 0.98879 0.95384 1.22008 1.00830 0.89891 0.89434 0.90674 1.22546 1.01164 0.99365 1.01396 1.19216 0.93594 0.96400 0.91539 1.21168 1.28686 0.92018 1.11046 0.92019 1.24971 0.95910 0.97661 0.95990 1.69954 1.32638 1.35254 1.16278 0.86803 0.77459 0.86707 0.78296 1.20943 1.21507 1.19723 0.90021 0.92226 0.91967 0.85297 0.92774 0.90828 0.90394 0.77575 0.92029 0.88137 0.95892 0.91999 0.91988 0.92901 0.92267 0.93778 0.95681 0.97007 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.25 37.15 0.34 -1.52 16 2 C 0.12 1.82 3.56 -67.94 -0.24 1.57 16 3 C -0.15 -2.18 9.25 37.16 0.34 -1.83 16 4 N -0.45 -7.03 2.60 -108.21 -0.28 -7.31 16 5 C 0.14 2.05 11.81 -89.95 -1.06 0.99 16 6 N -0.31 -5.52 12.21 29.69 0.36 -5.16 16 7 N -0.31 -5.78 11.67 32.80 0.38 -5.40 16 8 C 0.20 3.54 6.66 -154.98 -1.03 2.51 16 9 C 0.14 2.35 4.01 -4.98 -0.02 2.33 16 10 N -0.51 -9.30 4.30 -236.33 -1.02 -10.31 16 11 C 0.03 0.43 8.96 60.07 0.54 0.97 16 12 C 0.09 1.62 2.27 -67.71 -0.15 1.47 16 13 H 0.08 1.46 7.87 -51.93 -0.41 1.05 16 14 C -0.19 -2.98 8.41 37.16 0.31 -2.67 16 15 C 0.03 0.68 4.41 -27.88 -0.12 0.55 16 16 C -0.49 -12.36 8.80 -34.44 -0.30 -12.66 16 17 H 0.06 1.59 7.69 -52.49 -0.40 1.19 16 18 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 19 N -0.90 -24.82 13.29 55.43 0.74 -24.08 16 20 Si 0.88 20.17 29.54 -169.99 -5.02 15.15 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.58 7.97 -51.93 -0.41 0.17 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.13 2.27 6.84 -51.92 -0.36 1.92 16 28 H 0.05 0.63 7.97 -51.93 -0.41 0.21 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.21 2.18 8.06 -52.48 -0.42 1.76 16 32 H 0.06 1.01 6.77 -51.93 -0.35 0.66 16 33 H 0.10 1.80 5.26 -51.93 -0.27 1.53 16 34 H 0.02 0.36 7.08 -51.93 -0.37 -0.01 16 35 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 36 H 0.06 1.10 7.06 -51.93 -0.37 0.74 16 37 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.64 7.02 -51.93 -0.36 0.28 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.01 0.28 6.36 -51.93 -0.33 -0.05 16 42 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -29.00 335.35 -8.17 -37.17 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.89 Total: 1.86 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.49 Total: -6.97 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.18 Total: -52.27 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.00 -8.17 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566740741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.864 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds