Wall clock time and date at job start Mon Mar 30 2020 04:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46498 * 109.47234 * 119.99954 * 2 1 3 5 5 C 1.35490 * 126.98439 * 300.02892 * 4 2 1 6 6 N 1.30517 * 107.31348 * 179.97438 * 5 4 2 7 7 N 1.28600 * 109.67108 * 359.97438 * 6 5 4 8 8 C 1.30521 * 109.67346 * 359.72729 * 7 6 5 9 9 C 1.50700 * 126.35039 * 180.29947 * 8 7 6 10 10 N 1.46895 * 109.47025 * 270.16128 * 9 8 7 11 11 C 1.46909 * 110.99923 * 66.04376 * 10 9 8 12 12 C 1.46898 * 111.00140 * 189.99609 * 10 9 8 13 13 H 1.09001 * 109.47510 * 188.94694 * 12 10 9 14 14 C 1.53005 * 109.47283 * 308.94977 * 12 10 9 15 15 C 1.52998 * 109.46942 * 68.95095 * 12 10 9 16 16 C 1.50701 * 109.47293 * 62.98626 * 15 12 10 17 17 H 1.08000 * 119.99804 * 355.13756 * 16 15 12 18 18 C 1.37880 * 119.99969 * 175.13589 * 16 15 12 19 19 N 1.31514 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46915 * 89.99698 * 20 18 16 22 22 H 1.48494 * 109.46872 * 209.99892 * 20 18 16 23 23 H 1.48505 * 109.46995 * 330.00165 * 20 18 16 24 24 H 1.09003 * 109.47271 * 60.00361 * 1 2 3 25 25 H 1.08998 * 109.47272 * 299.99903 * 1 2 3 26 26 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47425 * 239.99980 * 2 1 3 28 28 H 1.08998 * 109.46897 * 59.99868 * 3 2 1 29 29 H 1.09003 * 109.47430 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47170 * 299.99795 * 3 2 1 31 31 H 1.08006 * 126.34062 * 0.02838 * 5 4 2 32 32 H 1.09002 * 109.47043 * 30.16256 * 9 8 7 33 33 H 1.09001 * 109.46974 * 150.15890 * 9 8 7 34 34 H 1.09002 * 109.46763 * 54.13508 * 11 10 9 35 35 H 1.08999 * 109.46958 * 174.12852 * 11 10 9 36 36 H 1.08992 * 109.46943 * 294.13574 * 11 10 9 37 37 H 1.09002 * 109.46826 * 59.99938 * 14 12 10 38 38 H 1.08998 * 109.47105 * 179.97438 * 14 12 10 39 39 H 1.09003 * 109.46652 * 300.00062 * 14 12 10 40 40 H 1.08996 * 109.47233 * 182.98966 * 15 12 10 41 41 H 1.09001 * 109.47127 * 302.98961 * 15 12 10 42 42 H 0.97001 * 120.00419 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7794 -0.3536 2.4865 6 7 2.3959 -1.2260 3.2364 7 7 3.0019 -2.0835 2.4939 8 6 2.7947 -1.8004 1.2367 9 6 3.3241 -2.5639 0.0502 10 7 4.6307 -2.0177 -0.3402 11 6 5.6347 -2.2565 0.7053 12 6 5.0695 -2.5720 -1.6279 13 1 6.1018 -2.2777 -1.8173 14 6 4.9740 -4.0985 -1.5852 15 6 4.1731 -2.0360 -2.7459 16 6 4.3231 -0.5392 -2.8360 17 1 4.9296 -0.0128 -2.1138 18 6 3.6862 0.1583 -3.8405 19 7 2.9481 -0.4827 -4.7202 20 14 3.8727 2.0136 -3.9526 21 1 5.0428 2.3427 -4.8056 22 1 2.6452 2.5993 -4.5486 23 1 4.0785 2.5734 -2.5926 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.1876 0.4817 2.8308 32 1 3.4342 -3.6156 0.3146 33 1 2.6273 -2.4697 -0.7827 34 1 5.6648 -3.3196 0.9441 35 1 6.6137 -1.9364 0.3487 36 1 5.3705 -1.6908 1.5987 37 1 3.9417 -4.3928 -1.3958 38 1 5.2992 -4.5097 -2.5408 39 1 5.6127 -4.4803 -0.7887 40 1 4.4648 -2.4881 -3.6938 41 1 3.1342 -2.2846 -2.5293 42 1 2.4997 0.0079 -5.4267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566740741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:29 Heat of formation + Delta-G solvation = 59.051681 kcal Electronic energy + Delta-G solvation = -21887.965348 eV Core-core repulsion = 18903.833755 eV Total energy + Delta-G solvation = -2984.131593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.06557 -39.43737 -37.50318 -35.04323 -33.21927 -32.31305 -31.44611 -29.12149 -28.41341 -28.22687 -25.85070 -24.66661 -24.28364 -22.54748 -21.38876 -20.23525 -18.31161 -18.04092 -17.19134 -16.68179 -16.51913 -16.35825 -15.56389 -15.45427 -15.18726 -14.54080 -14.23830 -14.07599 -14.04027 -13.64393 -13.60999 -13.25207 -13.17232 -13.05284 -12.74059 -12.54399 -12.49557 -12.41855 -12.33063 -12.20523 -11.97249 -11.80086 -11.31563 -11.07680 -11.04631 -11.02788 -10.44761 -10.16794 -9.05972 -8.04963 -6.08272 0.91284 1.40881 1.45750 1.53957 1.63307 1.89605 2.49463 3.08589 3.30863 3.47326 3.62298 3.74151 3.95054 4.01431 4.17621 4.19232 4.30810 4.47030 4.52612 4.56754 4.60537 4.62646 4.65965 4.75180 4.77345 4.84823 5.00664 5.03128 5.06676 5.18556 5.20843 5.23331 5.26399 5.34251 5.54017 5.71598 5.92918 6.02930 6.21739 6.30867 6.51857 7.04852 7.57225 7.79006 9.06412 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.008962 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.380199 B = 3123.721827 C = 4300.450263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 C -0.149 4.149 4 N -0.450 5.450 5 C 0.158 3.842 6 N -0.340 5.340 7 N -0.327 5.327 8 C 0.189 3.811 9 C 0.145 3.855 10 N -0.526 5.526 11 C 0.035 3.965 12 C 0.095 3.905 13 H 0.070 0.930 14 C -0.177 4.177 15 C 0.038 3.962 16 C -0.490 4.490 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.933 5.933 20 Si 0.934 3.066 21 H -0.287 1.287 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.063 0.937 40 H -0.002 1.002 41 H -0.001 1.001 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 0.953 8.872 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 C -0.207 4.207 4 N -0.139 5.139 5 C -0.130 4.130 6 N -0.180 5.180 7 N -0.168 5.168 8 C -0.080 4.080 9 C 0.015 3.985 10 N -0.250 5.250 11 C -0.113 4.113 12 C -0.013 4.013 13 H 0.088 0.912 14 C -0.236 4.236 15 C 0.001 3.999 16 C -0.528 4.528 17 H 0.072 0.928 18 C -0.186 4.186 19 N -0.575 5.575 20 Si 0.761 3.239 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.268 0.732 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.568 0.814 9.889 10.545 hybrid contribution -0.219 0.741 -1.582 1.761 sum -3.787 1.556 8.307 9.261 Atomic orbital electron populations 1.22139 0.90903 1.03166 1.04833 1.21657 0.96630 0.94441 0.84820 1.22035 1.01218 0.93484 1.03986 1.46571 1.37126 1.21340 1.08899 1.26891 1.03337 1.02917 0.79876 1.74091 1.12155 1.04013 1.27712 1.74122 1.20843 1.22354 0.99527 1.24793 0.96626 0.90227 0.96371 1.20304 0.92620 0.94694 0.90838 1.61968 1.01312 1.58853 1.02860 1.22292 0.95314 0.99427 0.94265 1.21734 0.99254 0.91735 0.88570 0.91181 1.22427 1.01801 0.96980 1.02355 1.19054 0.93698 0.95300 0.91887 1.21344 1.27831 0.93205 1.10439 0.92765 1.25596 0.95747 1.01434 0.95812 1.70065 1.33753 1.36741 1.16976 0.85925 0.77178 0.82280 0.78545 1.21406 1.21014 1.18583 0.89360 0.89439 0.92487 0.89074 0.89453 0.93899 0.90295 0.73160 0.91254 0.89509 0.94693 0.91250 0.93199 0.92710 0.91935 0.91831 0.98366 0.98262 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.25 71.98 0.67 -2.53 16 2 C 0.13 3.56 3.56 44.99 0.16 3.72 16 3 C -0.15 -3.96 9.25 71.98 0.67 -3.29 16 4 N -0.45 -13.48 2.60 -496.28 -1.29 -14.77 16 5 C 0.16 4.26 11.81 180.11 2.13 6.39 16 6 N -0.34 -11.71 12.21 -59.99 -0.73 -12.45 16 7 N -0.33 -12.12 11.67 -50.15 -0.59 -12.71 16 8 C 0.19 6.55 6.66 137.97 0.92 7.47 16 9 C 0.15 5.01 4.01 85.56 0.34 5.36 16 10 N -0.53 -19.05 4.30 -901.60 -3.88 -22.93 16 11 C 0.04 1.14 8.96 127.69 1.14 2.28 16 12 C 0.09 3.57 2.27 44.92 0.10 3.68 16 13 H 0.07 2.70 7.87 -2.39 -0.02 2.68 16 14 C -0.18 -5.51 8.41 71.98 0.61 -4.90 16 15 C 0.04 1.77 4.41 29.85 0.13 1.91 16 16 C -0.49 -25.07 8.80 25.60 0.23 -24.84 16 17 H 0.05 2.82 7.69 -2.91 -0.02 2.80 16 18 C 0.01 0.57 5.46 84.66 0.46 1.03 16 19 N -0.93 -52.30 13.29 21.45 0.28 -52.01 16 20 Si 0.93 41.40 29.54 68.60 2.03 43.43 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 1.35 7.97 -2.39 -0.02 1.33 16 26 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.09 3.29 6.84 -2.38 -0.02 3.27 16 28 H 0.09 1.70 7.97 -2.39 -0.02 1.68 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.25 4.12 8.06 -2.91 -0.02 4.09 16 32 H 0.07 2.25 6.77 -2.39 -0.02 2.23 16 33 H 0.09 3.21 5.26 -2.39 -0.01 3.20 16 34 H 0.03 1.04 7.08 -2.39 -0.02 1.02 16 35 H 0.07 2.11 7.90 -2.39 -0.02 2.09 16 36 H 0.05 1.74 7.06 -2.39 -0.02 1.73 16 37 H 0.05 1.68 6.54 -2.39 -0.02 1.66 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.74 7.02 -2.39 -0.02 1.72 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.00 -0.04 6.36 -2.39 -0.02 -0.05 16 42 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -63.03 335.35 4.36 -58.66 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.99 Total: 16.50 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 7.55 Total: -3.73 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -6.20 Total: -114.86 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -63.03 4.36 -58.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566740741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.712 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds