Wall clock time and date at job start Mon Mar 30 2020 04:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00531 * 2 1 4 4 C 1.53773 * 113.61964 * 210.00013 * 3 2 1 5 5 C 1.53775 * 87.08565 * 219.93623 * 4 3 2 6 6 C 1.52994 * 113.61649 * 139.97947 * 5 4 3 7 7 C 1.53002 * 109.47399 * 176.53131 * 6 5 4 8 8 N 1.46901 * 109.47515 * 180.02562 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.15012 * 145.00715 * 75.94491 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.53783 * 87.17159 * 25.38845 * 5 4 3 24 24 H 1.08996 * 109.46767 * 59.99480 * 1 2 3 25 25 H 1.08989 * 109.47499 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46770 * 300.00153 * 1 2 3 27 27 H 1.09001 * 112.84421 * 341.20249 * 3 2 1 28 28 H 1.09001 * 113.61561 * 105.38380 * 4 3 2 29 29 H 1.08998 * 113.61493 * 334.48874 * 4 3 2 30 30 H 1.09000 * 113.61657 * 270.80275 * 5 4 3 31 31 H 1.09004 * 109.47604 * 56.53046 * 6 5 4 32 32 H 1.08996 * 109.47513 * 296.52963 * 6 5 4 33 33 H 1.09002 * 109.47245 * 59.99731 * 7 6 5 34 34 H 1.08996 * 109.47056 * 300.00006 * 7 6 5 35 35 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 36 36 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 37 37 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.09005 * 113.61395 * 89.16087 * 23 5 4 42 42 H 1.09002 * 113.61582 * 220.05865 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.3756 1.3718 -0.7045 5 6 3.8222 2.3197 0.4210 6 6 5.2538 2.0711 0.8999 7 6 5.6281 3.1158 1.9532 8 7 7.0029 2.8774 2.4125 9 6 7.3978 3.8642 3.4265 10 6 8.8318 3.5837 3.8799 11 1 9.4905 3.5655 3.0115 12 6 8.8846 2.2810 4.5632 13 7 8.9250 1.2743 5.0903 14 6 9.2868 4.6829 4.8420 15 6 10.7376 4.4749 5.1924 16 1 11.2810 3.6422 4.7708 17 6 11.3731 5.3513 6.0465 18 7 10.7115 6.3655 6.5596 19 14 13.1735 5.0978 6.4748 20 1 13.9894 5.1500 5.2351 21 1 13.6164 6.1675 7.4048 22 1 13.3460 3.7741 7.1255 23 6 2.7531 1.6532 1.3029 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.3138 2.0788 -0.3237 28 1 3.3383 1.8457 -1.6853 29 1 3.9095 0.4216 -0.7125 30 1 3.6224 3.3706 0.2119 31 1 5.9380 2.1462 0.0546 32 1 5.3232 1.0745 1.3359 33 1 4.9440 3.0407 2.7985 34 1 5.5588 4.1123 1.5172 35 1 7.1094 1.9368 2.7621 36 1 6.7263 3.7944 4.2823 37 1 7.3404 4.8659 3.0004 38 1 8.6845 4.6435 5.7496 39 1 9.1638 5.6559 4.3663 40 1 11.1584 6.9818 7.1607 41 1 3.1165 0.7799 1.8448 42 1 2.2139 2.3539 1.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594724908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:26 Heat of formation + Delta-G solvation = -23.085997 kcal Electronic energy + Delta-G solvation = -19159.301131 eV Core-core repulsion = 16139.315029 eV Total energy + Delta-G solvation = -3019.986102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85962 -37.58057 -36.68486 -35.18516 -33.64445 -32.02961 -29.94697 -27.19894 -26.36552 -25.96669 -23.97300 -22.42776 -21.93055 -21.27435 -19.80944 -17.04052 -16.69410 -16.53378 -15.99001 -15.80576 -15.33452 -15.09163 -14.78811 -14.22593 -13.92642 -13.31218 -13.06349 -12.87796 -12.69128 -12.63827 -12.42930 -12.13475 -11.99306 -11.80876 -11.52500 -11.34896 -11.23933 -11.00895 -10.95474 -10.77491 -10.66563 -10.48136 -10.40827 -10.23347 -9.76318 -9.52059 -9.22902 -8.44624 -8.30194 -6.08833 -4.11928 3.31999 3.36004 3.39754 3.47565 3.57398 3.62995 4.16121 4.31808 4.34628 4.42806 4.53122 4.59268 4.81189 4.87899 4.97729 5.02921 5.21346 5.29003 5.29404 5.30792 5.39672 5.48944 5.53334 5.57519 5.66811 5.67575 5.75182 5.85389 5.95388 6.13755 6.16914 6.22574 6.39014 6.55715 6.92051 7.13632 7.43477 7.46800 7.54034 7.86133 8.23965 8.41155 8.92387 9.53325 11.02019 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.002528 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.274838 B =11074.540527 C =11232.146748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.058 3.942 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.105 4.105 7 C 0.059 3.941 8 N -0.694 5.694 9 C 0.068 3.932 10 C 0.006 3.994 11 H 0.111 0.889 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.152 4.152 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.337 0.663 36 H 0.034 0.966 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.206 -5.775 -14.777 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 C -0.169 4.169 5 C -0.125 4.125 6 C -0.143 4.143 7 C -0.070 4.070 8 N -0.324 5.324 9 C -0.062 4.062 10 C -0.015 4.015 11 H 0.129 0.871 12 C -0.075 4.075 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.190 4.190 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.155 0.845 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.733 -6.952 -14.380 24.618 hybrid contribution 0.284 0.279 0.996 1.073 sum -18.449 -6.673 -13.384 23.750 Atomic orbital electron populations 1.22773 0.81407 1.02670 0.99832 1.87956 1.19475 1.27696 1.94610 1.23810 0.93931 0.84956 0.97313 1.23270 0.95085 1.00538 0.97992 1.22282 0.94783 0.99059 0.96393 1.21504 0.94752 0.98900 0.99157 1.21942 0.88640 0.99548 0.96873 1.60579 1.23401 1.07048 1.41420 1.22069 0.94657 0.96759 0.92750 1.19338 0.96569 0.86585 0.99057 0.87121 1.29375 0.91717 0.93993 0.92440 1.81076 1.09988 1.13606 1.10780 1.19160 0.96612 0.91631 0.93215 1.21117 0.95544 1.11625 1.28200 0.92541 1.24962 0.98267 0.95047 0.95757 1.69931 1.36619 1.14840 1.31676 0.86641 0.85091 0.77822 0.78439 1.19998 1.21207 1.20280 1.23629 0.97534 1.00940 0.96874 0.94138 0.89797 0.94077 0.89705 0.91028 0.89044 0.88873 0.90654 0.91961 0.95434 0.90845 0.84535 0.94812 0.89093 0.95781 0.94198 0.92752 0.89202 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.70 10.72 -35.23 -0.38 -4.07 16 3 C 0.06 0.47 4.31 -25.83 -0.11 0.36 16 4 C -0.13 -1.05 7.47 -25.93 -0.19 -1.24 16 5 C -0.11 -0.85 3.64 -89.81 -0.33 -1.18 16 6 C -0.11 -1.00 5.30 -26.73 -0.14 -1.14 16 7 C 0.06 0.65 5.68 -3.82 -0.02 0.62 16 8 N -0.69 -9.28 6.50 -113.78 -0.74 -10.02 16 9 C 0.07 1.01 5.12 -3.83 -0.02 0.99 16 10 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 11 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 12 C 0.24 4.95 12.98 -20.73 -0.27 4.68 16 13 N -0.48 -10.54 18.54 42.19 0.78 -9.76 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 15 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C -0.15 -1.29 7.48 -25.83 -0.19 -1.48 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.81 8.10 -51.93 -0.42 0.38 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.34 4.71 7.81 -39.29 -0.31 4.41 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 0.87 7.92 -51.93 -0.41 0.45 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -30.10 353.09 -7.63 -37.73 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.41 Total: -1.34 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.92 Total: -9.37 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.78 Total: -44.69 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.10 -7.63 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594724908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.647 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds