Wall clock time and date at job start Mon Mar 30 2020 04:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00531 * 2 1 4 4 C 1.53773 * 113.61964 * 210.00013 * 3 2 1 5 5 C 1.53775 * 87.08565 * 219.93623 * 4 3 2 6 6 C 1.52994 * 113.61649 * 139.97947 * 5 4 3 7 7 C 1.53002 * 109.47399 * 176.53131 * 6 5 4 8 8 N 1.46901 * 109.47515 * 180.02562 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.15012 * 145.00715 * 75.94491 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.53783 * 87.17159 * 25.38845 * 5 4 3 24 24 H 1.08996 * 109.46767 * 59.99480 * 1 2 3 25 25 H 1.08989 * 109.47499 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46770 * 300.00153 * 1 2 3 27 27 H 1.09001 * 112.84421 * 341.20249 * 3 2 1 28 28 H 1.09001 * 113.61561 * 105.38380 * 4 3 2 29 29 H 1.08998 * 113.61493 * 334.48874 * 4 3 2 30 30 H 1.09000 * 113.61657 * 270.80275 * 5 4 3 31 31 H 1.09004 * 109.47604 * 56.53046 * 6 5 4 32 32 H 1.08996 * 109.47513 * 296.52963 * 6 5 4 33 33 H 1.09002 * 109.47245 * 59.99731 * 7 6 5 34 34 H 1.08996 * 109.47056 * 300.00006 * 7 6 5 35 35 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 36 36 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 37 37 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.09005 * 113.61395 * 89.16087 * 23 5 4 42 42 H 1.09002 * 113.61582 * 220.05865 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.3756 1.3718 -0.7045 5 6 3.8222 2.3197 0.4210 6 6 5.2538 2.0711 0.8999 7 6 5.6281 3.1158 1.9532 8 7 7.0029 2.8774 2.4125 9 6 7.3978 3.8642 3.4265 10 6 8.8318 3.5837 3.8799 11 1 9.4905 3.5655 3.0115 12 6 8.8846 2.2810 4.5632 13 7 8.9250 1.2743 5.0903 14 6 9.2868 4.6829 4.8420 15 6 10.7376 4.4749 5.1924 16 1 11.2810 3.6422 4.7708 17 6 11.3731 5.3513 6.0465 18 7 10.7115 6.3655 6.5596 19 14 13.1735 5.0978 6.4748 20 1 13.9894 5.1500 5.2351 21 1 13.6164 6.1675 7.4048 22 1 13.3460 3.7741 7.1255 23 6 2.7531 1.6532 1.3029 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.3138 2.0788 -0.3237 28 1 3.3383 1.8457 -1.6853 29 1 3.9095 0.4216 -0.7125 30 1 3.6224 3.3706 0.2119 31 1 5.9380 2.1462 0.0546 32 1 5.3232 1.0745 1.3359 33 1 4.9440 3.0407 2.7985 34 1 5.5588 4.1123 1.5172 35 1 7.1094 1.9368 2.7621 36 1 6.7263 3.7944 4.2823 37 1 7.3404 4.8659 3.0004 38 1 8.6845 4.6435 5.7496 39 1 9.1638 5.6559 4.3663 40 1 11.1584 6.9818 7.1607 41 1 3.1165 0.7799 1.8448 42 1 2.2139 2.3539 1.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594724908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:26 Heat of formation + Delta-G solvation = -41.448992 kcal Electronic energy + Delta-G solvation = -19160.097410 eV Core-core repulsion = 16139.315029 eV Total energy + Delta-G solvation = -3020.782381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50366 -38.92545 -37.52956 -36.45265 -35.44815 -33.64960 -31.11869 -28.28497 -27.47485 -26.63092 -25.12382 -23.62527 -23.56850 -22.16834 -20.45415 -18.53705 -18.25853 -17.61140 -16.91934 -16.69072 -16.54361 -16.02589 -15.81630 -15.52099 -14.97097 -14.76898 -14.33173 -14.12953 -14.03833 -13.73872 -13.39639 -13.34430 -13.25416 -13.05975 -12.74039 -12.66995 -12.45388 -12.35295 -12.26265 -12.10586 -11.91686 -11.64382 -11.51785 -11.31903 -11.11737 -10.99144 -10.54817 -10.37236 -9.37742 -8.19374 -6.27637 1.41448 1.42758 1.50058 1.92506 1.94793 2.41656 2.89731 3.15423 3.21688 3.24826 3.62361 3.71585 3.90723 3.95042 4.10727 4.25855 4.38424 4.42411 4.52998 4.56388 4.56882 4.69259 4.74998 4.78683 4.85282 4.87701 4.91693 4.95097 5.01143 5.05059 5.14453 5.24117 5.39293 5.47190 5.55249 5.62732 5.79294 6.05315 6.21885 6.35111 6.35428 6.74359 6.87008 7.40687 8.91298 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.002528 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.274838 B =11074.540527 C =11232.146748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.056 3.944 4 C -0.131 4.131 5 C -0.098 4.098 6 C -0.099 4.099 7 C 0.060 3.940 8 N -0.695 5.695 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.124 0.876 12 C 0.251 3.749 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.541 4.541 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.950 3.050 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.155 4.155 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.085 0.915 35 H 0.333 0.667 36 H 0.030 0.970 37 H 0.106 0.894 38 H 0.000 1.000 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.688 -5.424 -16.073 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.169 4.169 5 C -0.117 4.117 6 C -0.137 4.137 7 C -0.069 4.069 8 N -0.325 5.325 9 C -0.052 4.052 10 C -0.003 4.003 11 H 0.141 0.859 12 C -0.065 4.065 13 N -0.184 5.184 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.775 3.225 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.193 4.193 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.224 -6.608 -15.693 25.680 hybrid contribution 0.390 0.146 1.394 1.455 sum -18.833 -6.462 -14.299 24.513 Atomic orbital electron populations 1.22939 0.80001 1.03549 1.00735 1.87919 1.21198 1.28708 1.94737 1.23922 0.94292 0.84976 0.96927 1.23250 0.94956 1.00004 0.98681 1.22256 0.93484 0.99866 0.96127 1.21433 0.95781 0.97889 0.98581 1.22021 0.87092 1.00587 0.97160 1.60589 1.25161 1.06355 1.40404 1.21922 0.92061 0.97950 0.93252 1.19254 0.99210 0.83948 0.97929 0.85883 1.29740 0.90765 0.94114 0.91854 1.81076 1.11152 1.14637 1.11508 1.18987 0.94647 0.93181 0.93239 1.21538 0.97293 1.11193 1.27842 0.92794 1.25734 1.02155 0.95028 0.95983 1.70027 1.38130 1.15676 1.32457 0.85733 0.80790 0.77384 0.78570 1.18720 1.20698 1.20734 1.23611 0.97994 1.00502 0.97200 0.92824 0.89075 0.93528 0.87870 0.89684 0.90368 0.87334 0.90736 0.93012 0.95486 0.89684 0.85041 0.95137 0.87538 0.98193 0.94418 0.92694 0.90942 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.41 -7.58 10.72 -148.98 -1.60 -9.18 16 3 C 0.06 0.84 4.31 31.18 0.13 0.97 16 4 C -0.13 -1.90 7.47 31.12 0.23 -1.67 16 5 C -0.10 -1.40 3.64 -10.27 -0.04 -1.44 16 6 C -0.10 -1.74 5.30 30.59 0.16 -1.58 16 7 C 0.06 1.20 5.68 86.30 0.49 1.69 16 8 N -0.69 -17.46 6.50 -513.90 -3.34 -20.80 16 9 C 0.08 2.23 5.12 86.30 0.44 2.67 16 10 C 0.02 0.66 2.42 -12.60 -0.03 0.63 16 11 H 0.12 4.20 8.14 -2.38 -0.02 4.18 16 12 C 0.25 10.16 12.98 89.43 1.16 11.32 16 13 N -0.51 -22.22 18.54 20.02 0.37 -21.84 16 14 C 0.04 1.77 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 16 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 17 C 0.01 0.55 5.46 84.66 0.46 1.01 16 18 N -0.92 -53.18 13.29 21.45 0.28 -52.90 16 19 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 C -0.16 -2.46 7.48 31.18 0.23 -2.23 16 24 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 1.13 7.87 -2.39 -0.02 1.11 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.02 7.87 -2.39 -0.02 1.00 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.33 8.94 7.81 -89.69 -0.70 8.24 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 41 H 0.07 1.40 7.92 -2.38 -0.02 1.38 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -63.27 353.09 2.86 -60.41 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.28 Total: 12.44 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.83 Total: -13.80 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -2.68 Total: -95.54 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.60 Total: -9.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.27 2.86 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594724908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.962 kcal (2) G-P(sol) polarization free energy of solvation -63.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds