Wall clock time and date at job start Mon Mar 30 2020 04:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00432 * 2 1 4 4 C 1.53781 * 113.61495 * 209.99940 * 3 2 1 5 5 C 1.53782 * 87.08025 * 219.93549 * 4 3 2 6 6 C 1.53002 * 113.60697 * 139.98449 * 5 4 3 7 7 C 1.53001 * 109.46782 * 176.53269 * 6 5 4 8 8 N 1.46904 * 109.47256 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00016 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47181 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47070 * 305.00230 * 10 9 8 12 12 C 1.47201 * 109.46938 * 65.00082 * 10 9 8 13 13 N 9.05782 * 160.43205 * 321.66449 * 3 1 2 14 14 C 1.53000 * 109.47233 * 184.99855 * 10 9 8 15 15 C 1.50698 * 109.46984 * 175.00062 * 14 10 9 16 16 H 1.08008 * 120.00253 * 0.02562 * 15 14 10 17 17 C 1.37881 * 120.00032 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99811 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47359 * 59.99932 * 19 17 15 21 21 H 1.48500 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46855 * 299.99342 * 19 17 15 23 23 C 1.53787 * 87.17235 * 25.39658 * 5 4 3 24 24 H 1.08997 * 109.47306 * 59.98999 * 1 2 3 25 25 H 1.08996 * 109.47682 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46688 * 299.99562 * 1 2 3 27 27 H 1.08994 * 112.84821 * 341.20291 * 3 2 1 28 28 H 1.09003 * 113.60993 * 105.39388 * 4 3 2 29 29 H 1.08991 * 113.61860 * 334.49227 * 4 3 2 30 30 H 1.09000 * 113.61677 * 270.80109 * 5 4 3 31 31 H 1.08997 * 109.47560 * 56.53683 * 6 5 4 32 32 H 1.09003 * 109.47242 * 296.52809 * 6 5 4 33 33 H 1.08998 * 109.47638 * 59.99815 * 7 6 5 34 34 H 1.09003 * 109.46856 * 299.99776 * 7 6 5 35 35 H 1.00896 * 110.99668 * 303.95167 * 8 7 6 36 36 H 1.09008 * 109.47165 * 59.99956 * 9 8 7 37 37 H 1.08997 * 109.47437 * 299.99850 * 9 8 7 38 38 H 1.08990 * 109.47170 * 295.00238 * 14 10 9 39 39 H 1.09001 * 109.46952 * 55.00315 * 14 10 9 40 40 H 0.96997 * 119.99784 * 180.02562 * 18 17 15 41 41 H 1.08992 * 113.61538 * 89.15459 * 23 5 4 42 42 H 1.08991 * 113.60782 * 220.05660 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3717 -0.7045 5 6 3.8221 2.3197 0.4211 6 6 5.2539 2.0709 0.8998 7 6 5.6281 3.1156 1.9531 8 7 7.0030 2.8772 2.4124 9 6 7.3979 3.8640 3.4264 10 6 8.8320 3.5835 3.8797 11 1 8.9092 2.5521 4.2237 12 6 9.7534 3.7946 2.7513 13 7 10.4642 3.9577 1.8817 14 6 9.2002 4.5314 5.0229 15 6 10.5657 4.1747 5.5512 16 1 11.1162 3.3542 5.1149 17 6 11.1124 4.8957 6.5915 18 7 10.4423 5.8951 7.1225 19 14 12.8054 4.4540 7.2458 20 1 13.8061 4.5816 6.1562 21 1 13.1627 5.3739 8.3555 22 1 12.7934 3.0557 7.7459 23 6 2.7531 1.6530 1.3030 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.3138 2.0788 -0.3236 28 1 3.3382 1.8458 -1.6853 29 1 3.9094 0.4215 -0.7126 30 1 3.6223 3.3706 0.2118 31 1 5.9379 2.1462 0.0545 32 1 5.3232 1.0743 1.3358 33 1 4.9441 3.0405 2.7985 34 1 5.5588 4.1122 1.5171 35 1 7.1095 1.9367 2.7619 36 1 6.7264 3.7941 4.2823 37 1 7.3405 4.8656 3.0004 38 1 9.2094 5.5574 4.6554 39 1 8.4655 4.4384 5.8228 40 1 10.8271 6.4025 7.8541 41 1 3.1165 0.7799 1.8447 42 1 2.2140 2.3537 1.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594724909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:28 Heat of formation + Delta-G solvation = -22.600948 kcal Electronic energy + Delta-G solvation = -19136.401729 eV Core-core repulsion = 16116.436661 eV Total energy + Delta-G solvation = -3019.965068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86170 -37.50262 -36.65862 -35.18141 -33.58471 -32.01886 -29.93541 -27.20112 -26.36945 -25.97046 -23.97493 -22.40046 -21.87104 -21.30311 -19.81208 -17.13381 -16.94046 -16.38977 -15.98722 -15.60933 -15.22929 -14.96583 -14.74635 -14.22774 -14.06816 -13.47644 -13.05506 -12.78744 -12.69318 -12.59336 -12.32777 -12.01383 -11.92292 -11.81404 -11.49036 -11.41296 -11.18014 -11.03165 -10.95700 -10.73810 -10.63969 -10.45946 -10.41246 -10.21822 -9.76770 -9.51503 -9.22364 -8.44986 -8.26612 -6.08890 -4.12038 3.31822 3.35978 3.39853 3.47104 3.77217 3.86854 4.16478 4.31707 4.34244 4.42824 4.52816 4.59116 4.86549 4.94223 4.98374 5.02370 5.21090 5.28879 5.29099 5.30943 5.40925 5.49151 5.52838 5.59489 5.66387 5.67778 5.77253 5.85645 5.96003 6.04086 6.16791 6.22547 6.41259 6.51625 6.91444 7.14180 7.42956 7.51675 7.55231 7.86299 8.24021 8.61293 8.92549 9.53281 11.01990 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.002550 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.034426 B =10976.659722 C =11292.468612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.058 3.942 4 C -0.132 4.132 5 C -0.107 4.107 6 C -0.105 4.105 7 C 0.061 3.939 8 N -0.696 5.696 9 C 0.067 3.933 10 C 0.009 3.991 11 H 0.099 0.901 12 C 0.256 3.744 13 N -0.480 5.480 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.151 4.151 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.340 0.660 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.090 0.910 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.888 -8.785 -11.202 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 C -0.169 4.169 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.068 4.068 8 N -0.327 5.327 9 C -0.063 4.063 10 C -0.013 4.013 11 H 0.117 0.883 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.188 4.188 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.412 -8.212 -12.895 24.709 hybrid contribution -0.067 -0.250 1.606 1.627 sum -19.479 -8.463 -11.289 24.052 Atomic orbital electron populations 1.22775 0.81409 1.02666 0.99837 1.87953 1.19470 1.27693 1.94613 1.23812 0.93917 0.84949 0.97347 1.23275 0.95096 1.00538 0.98017 1.22287 0.94831 0.99034 0.96417 1.21499 0.94674 0.98909 0.99174 1.21920 0.88621 0.99424 0.96875 1.60507 1.23422 1.07052 1.41680 1.22058 0.94712 0.96447 0.93097 1.19220 0.88399 1.03719 0.89972 0.88345 1.28816 0.92721 0.91902 0.92683 1.80932 1.11301 1.10206 1.13208 1.19162 0.97429 0.93683 0.90427 1.21115 1.01906 1.16322 1.17132 0.92537 1.24962 0.97680 0.94863 0.96518 1.69929 1.37950 1.19937 1.25267 0.86642 0.84486 0.78365 0.78513 1.20217 1.21209 1.20052 1.23618 0.97476 1.00911 0.96833 0.94158 0.89792 0.94065 0.89736 0.91092 0.89026 0.88971 0.90845 0.91802 0.95234 0.91230 0.84206 0.93355 0.90596 0.95572 0.94474 0.92751 0.89135 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.59 10.72 -35.23 -0.38 -3.97 16 3 C 0.06 0.46 4.31 -25.82 -0.11 0.35 16 4 C -0.13 -1.05 7.47 -25.92 -0.19 -1.25 16 5 C -0.11 -0.85 3.64 -89.80 -0.33 -1.18 16 6 C -0.10 -0.98 5.30 -26.73 -0.14 -1.12 16 7 C 0.06 0.65 5.68 -3.82 -0.02 0.63 16 8 N -0.70 -9.09 6.20 -113.78 -0.71 -9.79 16 9 C 0.07 0.99 5.05 -3.83 -0.02 0.97 16 10 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 12 C 0.26 5.43 13.66 -20.79 -0.28 5.14 16 13 N -0.48 -11.09 18.53 42.11 0.78 -10.31 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 16 H 0.06 1.50 7.59 -52.48 -0.40 1.11 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.15 -1.21 7.48 -25.82 -0.19 -1.40 16 24 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.34 4.03 8.73 -39.29 -0.34 3.68 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -30.84 354.25 -7.63 -38.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.44 Total: -2.42 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.93 Total: -8.80 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.81 Total: -45.02 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.38 Total: -3.97 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.84 -7.63 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594724909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.865 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds