Wall clock time and date at job start Mon Mar 30 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99680 * 2 1 4 4 H 1.08994 * 109.47682 * 29.99678 * 3 2 1 5 5 C 1.53000 * 109.46728 * 269.99751 * 3 2 1 6 6 N 1.46896 * 109.47275 * 65.00477 * 5 3 2 7 7 C 1.46903 * 111.00054 * 190.00335 * 6 5 3 8 8 C 1.50699 * 109.47463 * 160.90401 * 7 6 5 9 9 H 1.07998 * 119.99793 * 356.94318 * 8 7 6 10 10 C 1.37877 * 119.99993 * 176.93938 * 8 7 6 11 11 N 1.31516 * 120.00193 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99863 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46926 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46764 * 119.99918 * 12 10 8 15 15 H 1.48494 * 109.47238 * 240.00044 * 12 10 8 16 16 C 1.46891 * 111.00164 * 66.04400 * 6 5 3 17 17 C 1.53001 * 109.47156 * 60.61035 * 16 6 5 18 18 C 1.47207 * 109.47205 * 181.52892 * 17 16 6 19 19 N 6.54387 * 73.52843 * 355.50192 * 2 1 3 20 20 C 1.52995 * 109.46852 * 150.00185 * 3 2 1 21 21 C 1.53775 * 113.61751 * 39.13175 * 20 3 2 22 22 C 1.53953 * 87.02013 * 220.04798 * 21 20 3 23 23 C 1.53778 * 87.11030 * 25.36334 * 22 21 20 24 24 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46935 * 300.00248 * 1 2 3 26 26 H 1.09001 * 109.47092 * 60.00272 * 1 2 3 27 27 H 1.09007 * 109.47175 * 304.99702 * 5 3 2 28 28 H 1.09003 * 109.47187 * 185.00485 * 5 3 2 29 29 H 1.09006 * 109.46633 * 280.90404 * 7 6 5 30 30 H 1.09002 * 109.47368 * 40.90054 * 7 6 5 31 31 H 0.96995 * 119.99680 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.47094 * 180.60560 * 16 6 5 33 33 H 1.08998 * 109.47321 * 300.60626 * 16 6 5 34 34 H 1.09007 * 109.46794 * 301.52213 * 17 16 6 35 35 H 1.08999 * 109.47471 * 61.52478 * 17 16 6 36 36 H 1.09000 * 112.84846 * 170.33176 * 20 3 2 37 37 H 1.09001 * 113.61836 * 334.57040 * 21 20 3 38 38 H 1.09005 * 113.61544 * 105.47401 * 21 20 3 39 39 H 1.09002 * 113.54219 * 270.80837 * 22 21 20 40 40 H 1.09002 * 113.74365 * 139.94681 * 22 21 20 41 41 H 1.09006 * 113.61071 * 220.09014 * 23 22 21 42 42 H 1.08995 * 113.61791 * 89.18823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2176 1.7713 -1.4425 6 7 0.9129 1.9268 -2.0993 7 6 1.0728 2.1412 -3.5438 8 6 -0.2252 1.8325 -4.2443 9 1 -1.0684 1.4622 -3.6802 10 6 -0.3364 2.0229 -5.6053 11 7 0.6903 2.4744 -6.2922 12 14 -1.9453 1.6395 -6.4737 13 1 -2.9376 1.1494 -5.4836 14 1 -2.4621 2.8704 -7.1242 15 1 -1.7152 0.5947 -7.5036 16 6 0.1421 3.0173 -1.4874 17 6 0.9116 4.3314 -1.6356 18 6 0.1564 5.4177 -0.9902 19 7 -0.4264 6.2560 -0.4921 20 6 3.3589 1.2633 0.7212 21 6 4.1772 -0.0042 0.4236 22 6 4.5678 -0.0045 1.9128 23 6 3.2650 0.7695 2.1745 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.8100 1.0318 -1.9815 28 1 2.7413 2.7273 -1.4439 29 1 1.3475 3.1798 -3.7287 30 1 1.8559 1.4851 -3.9240 31 1 0.6119 2.6087 -7.2496 32 1 -0.8236 3.1036 -1.9855 33 1 -0.0124 2.8040 -0.4297 34 1 1.8883 4.2360 -1.1609 35 1 1.0425 4.5585 -2.6936 36 1 3.9276 2.1864 0.6096 37 1 3.5674 -0.8593 0.1320 38 1 5.0177 0.1666 -0.2491 39 1 5.4683 0.5712 2.1268 40 1 4.5836 -0.9974 2.3622 41 1 3.3702 1.5641 2.9133 42 1 2.4053 0.1264 2.3625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595396293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:21 Heat of formation + Delta-G solvation = 3.377514 kcal Electronic energy + Delta-G solvation = -21063.735878 eV Core-core repulsion = 18044.897321 eV Total energy + Delta-G solvation = -3018.838558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61668 -37.77115 -36.45004 -35.72843 -32.71794 -30.89854 -29.74723 -27.00381 -25.77621 -25.47819 -24.77971 -23.61801 -21.38949 -19.65037 -19.18695 -17.54589 -16.36469 -16.28509 -15.85428 -15.41417 -14.89243 -14.76897 -14.40971 -14.13472 -13.61452 -13.44863 -13.17265 -12.71107 -12.39091 -12.26071 -12.17919 -12.12026 -12.01498 -11.68221 -11.42097 -11.20133 -11.10339 -10.82126 -10.76353 -10.64842 -10.42640 -10.28694 -10.19933 -9.91316 -9.81376 -9.46570 -8.92884 -8.47749 -7.34925 -6.08222 -4.09390 3.01319 3.04039 3.28400 3.36938 3.40643 4.15108 4.23520 4.38955 4.58954 4.76670 4.80301 4.93748 5.02552 5.27227 5.30736 5.44004 5.50221 5.54897 5.63518 5.68476 5.73405 5.77312 5.83343 5.93061 5.96081 5.99911 6.05271 6.12856 6.21165 6.34556 6.41277 6.46913 6.51739 6.65401 7.11263 7.21119 7.65856 7.73533 7.80250 7.98954 8.04727 8.42089 8.98471 9.55630 11.01967 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005672 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.491429 B = 4935.061463 C = 5791.669230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.103 3.897 4 H 0.056 0.944 5 C 0.027 3.973 6 N -0.522 5.522 7 C 0.186 3.814 8 C -0.505 4.505 9 H 0.064 0.936 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.065 3.935 17 C -0.076 4.076 18 C 0.223 3.777 19 N -0.460 5.460 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.132 4.132 24 H 0.071 0.929 25 H 0.022 0.978 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.005 0.995 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.865 -3.006 13.254 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.045 3.955 4 H 0.074 0.926 5 C -0.101 4.101 6 N -0.244 5.244 7 C 0.061 3.939 8 C -0.543 4.543 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.065 4.065 17 C -0.117 4.117 18 C -0.095 4.095 19 N -0.138 5.138 20 C -0.131 4.131 21 C -0.163 4.163 22 C -0.182 4.182 23 C -0.169 4.169 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.895 -2.338 13.859 14.883 hybrid contribution -0.282 0.558 -1.028 1.203 sum 4.613 -1.780 12.831 13.751 Atomic orbital electron populations 1.22927 0.81061 1.01905 1.01094 1.87770 1.19818 1.26659 1.94997 1.21914 0.93606 0.85340 0.94651 0.92565 1.22744 0.92590 0.99706 0.95083 1.62399 1.15209 1.39977 1.06815 1.19887 0.98028 0.95822 0.80119 1.21162 0.97935 1.43046 0.92196 0.91797 1.24958 0.96568 0.95376 0.97562 1.69946 1.30003 1.46181 1.07643 0.86502 0.83743 0.77894 0.79655 1.19655 1.21212 1.21065 1.22173 0.98913 0.85961 0.99474 1.20266 0.98397 0.90825 1.02253 1.29296 0.93460 0.93846 0.92858 1.81149 1.10286 1.11543 1.10795 1.22679 0.95661 0.98923 0.95859 1.22834 0.99153 0.98737 0.95622 1.22829 0.97403 1.00297 0.97622 1.22866 0.98439 0.99723 0.95911 0.91074 0.95938 0.90175 0.90116 0.94646 0.97771 0.95224 0.92962 0.89053 0.91947 0.88087 0.86093 0.88701 0.88710 0.92030 0.90819 0.91858 0.92251 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.39 101.05 1.05 1.42 16 2 O -0.37 -5.54 8.44 -35.23 -0.30 -5.84 16 3 C 0.10 1.36 2.20 -26.73 -0.06 1.31 16 4 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 5 C 0.03 0.41 4.36 -3.83 -0.02 0.39 16 6 N -0.52 -9.24 2.87 -236.07 -0.68 -9.92 16 7 C 0.19 4.18 4.63 -4.98 -0.02 4.16 16 8 C -0.50 -12.87 8.60 -34.44 -0.30 -13.17 16 9 H 0.06 1.63 7.78 -52.49 -0.41 1.22 16 10 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 11 N -0.90 -25.09 13.29 55.43 0.74 -24.35 16 12 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.07 1.02 4.28 -3.83 -0.02 1.00 16 17 C -0.08 -1.06 5.08 -29.51 -0.15 -1.21 16 18 C 0.22 3.44 15.43 -20.76 -0.32 3.12 16 19 N -0.46 -8.05 18.54 42.15 0.78 -7.27 16 20 C -0.11 -1.26 3.58 -89.81 -0.32 -1.59 16 21 C -0.13 -1.43 7.49 -25.83 -0.19 -1.62 16 22 C -0.14 -1.41 8.09 -25.83 -0.21 -1.62 16 23 C -0.13 -1.37 7.54 -25.92 -0.20 -1.56 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 26 H 0.08 1.28 5.68 -51.93 -0.29 0.99 16 27 H 0.08 1.34 7.83 -51.92 -0.41 0.93 16 28 H 0.04 0.48 5.99 -51.93 -0.31 0.17 16 29 H 0.00 0.11 5.84 -51.93 -0.30 -0.20 16 30 H 0.03 0.74 7.75 -51.93 -0.40 0.34 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 1.61 7.52 -51.93 -0.39 1.22 16 33 H 0.06 0.86 6.04 -51.93 -0.31 0.55 16 34 H 0.10 1.20 6.21 -51.93 -0.32 0.87 16 35 H 0.12 1.90 6.27 -51.93 -0.33 1.58 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.23 7.03 -51.93 -0.36 0.86 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.96 7.72 -51.93 -0.40 0.55 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -28.12 333.98 -6.94 -35.06 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.64 Total: -0.48 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.85 Total: -7.96 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.84 Total: -41.55 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.30 Total: -5.84 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.12 -6.94 -35.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.437 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds