Wall clock time and date at job start Mon Mar 30 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99680 * 2 1 4 4 H 1.08994 * 109.47682 * 29.99678 * 3 2 1 5 5 C 1.53000 * 109.46728 * 269.99751 * 3 2 1 6 6 N 1.46896 * 109.47275 * 65.00477 * 5 3 2 7 7 C 1.46903 * 111.00054 * 190.00335 * 6 5 3 8 8 C 1.50699 * 109.47463 * 160.90401 * 7 6 5 9 9 H 1.07998 * 119.99793 * 356.94318 * 8 7 6 10 10 C 1.37877 * 119.99993 * 176.93938 * 8 7 6 11 11 N 1.31516 * 120.00193 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99863 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46926 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46764 * 119.99918 * 12 10 8 15 15 H 1.48494 * 109.47238 * 240.00044 * 12 10 8 16 16 C 1.46891 * 111.00164 * 66.04400 * 6 5 3 17 17 C 1.53001 * 109.47156 * 60.61035 * 16 6 5 18 18 C 1.47207 * 109.47205 * 181.52892 * 17 16 6 19 19 N 6.54387 * 73.52843 * 355.50192 * 2 1 3 20 20 C 1.52995 * 109.46852 * 150.00185 * 3 2 1 21 21 C 1.53775 * 113.61751 * 39.13175 * 20 3 2 22 22 C 1.53953 * 87.02013 * 220.04798 * 21 20 3 23 23 C 1.53778 * 87.11030 * 25.36334 * 22 21 20 24 24 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46935 * 300.00248 * 1 2 3 26 26 H 1.09001 * 109.47092 * 60.00272 * 1 2 3 27 27 H 1.09007 * 109.47175 * 304.99702 * 5 3 2 28 28 H 1.09003 * 109.47187 * 185.00485 * 5 3 2 29 29 H 1.09006 * 109.46633 * 280.90404 * 7 6 5 30 30 H 1.09002 * 109.47368 * 40.90054 * 7 6 5 31 31 H 0.96995 * 119.99680 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.47094 * 180.60560 * 16 6 5 33 33 H 1.08998 * 109.47321 * 300.60626 * 16 6 5 34 34 H 1.09007 * 109.46794 * 301.52213 * 17 16 6 35 35 H 1.08999 * 109.47471 * 61.52478 * 17 16 6 36 36 H 1.09000 * 112.84846 * 170.33176 * 20 3 2 37 37 H 1.09001 * 113.61836 * 334.57040 * 21 20 3 38 38 H 1.09005 * 113.61544 * 105.47401 * 21 20 3 39 39 H 1.09002 * 113.54219 * 270.80837 * 22 21 20 40 40 H 1.09002 * 113.74365 * 139.94681 * 22 21 20 41 41 H 1.09006 * 113.61071 * 220.09014 * 23 22 21 42 42 H 1.08995 * 113.61791 * 89.18823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2176 1.7713 -1.4425 6 7 0.9129 1.9268 -2.0993 7 6 1.0728 2.1412 -3.5438 8 6 -0.2252 1.8325 -4.2443 9 1 -1.0684 1.4622 -3.6802 10 6 -0.3364 2.0229 -5.6053 11 7 0.6903 2.4744 -6.2922 12 14 -1.9453 1.6395 -6.4737 13 1 -2.9376 1.1494 -5.4836 14 1 -2.4621 2.8704 -7.1242 15 1 -1.7152 0.5947 -7.5036 16 6 0.1421 3.0173 -1.4874 17 6 0.9116 4.3314 -1.6356 18 6 0.1564 5.4177 -0.9902 19 7 -0.4264 6.2560 -0.4921 20 6 3.3589 1.2633 0.7212 21 6 4.1772 -0.0042 0.4236 22 6 4.5678 -0.0045 1.9128 23 6 3.2650 0.7695 2.1745 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.8100 1.0318 -1.9815 28 1 2.7413 2.7273 -1.4439 29 1 1.3475 3.1798 -3.7287 30 1 1.8559 1.4851 -3.9240 31 1 0.6119 2.6087 -7.2496 32 1 -0.8236 3.1036 -1.9855 33 1 -0.0124 2.8040 -0.4297 34 1 1.8883 4.2360 -1.1609 35 1 1.0425 4.5585 -2.6936 36 1 3.9276 2.1864 0.6096 37 1 3.5674 -0.8593 0.1320 38 1 5.0177 0.1666 -0.2491 39 1 5.4683 0.5712 2.1268 40 1 4.5836 -0.9974 2.3622 41 1 3.3702 1.5641 2.9133 42 1 2.4053 0.1264 2.3625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595396293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:20 Heat of formation + Delta-G solvation = -11.783241 kcal Electronic energy + Delta-G solvation = -21064.393298 eV Core-core repulsion = 18044.897321 eV Total energy + Delta-G solvation = -3019.495977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67808 -38.97027 -37.60185 -37.04349 -34.67356 -32.11104 -31.14824 -28.60548 -26.87079 -26.47159 -25.90632 -25.14355 -22.68843 -20.98589 -20.07197 -18.87874 -18.19593 -17.47597 -16.93729 -16.55420 -16.52702 -15.85942 -15.74223 -15.42542 -15.02764 -14.76456 -14.33364 -14.15820 -13.71250 -13.50460 -13.44940 -13.14946 -13.06306 -12.98742 -12.95144 -12.62824 -12.53827 -12.41346 -12.17258 -11.96525 -11.91920 -11.36209 -11.34041 -11.25050 -11.03757 -10.76671 -10.50966 -10.18047 -8.79438 -8.11320 -6.18030 1.42969 1.46425 1.56605 1.74941 1.78460 2.45460 2.96644 3.11955 3.22550 3.37740 3.79327 3.96881 4.02578 4.10838 4.14377 4.22435 4.39156 4.44253 4.52368 4.65919 4.68678 4.76341 4.87933 4.92509 4.97400 5.04329 5.10362 5.15339 5.18653 5.23807 5.26601 5.29583 5.41067 5.44154 5.51801 5.76592 5.80173 6.18284 6.38541 6.57440 6.59532 6.71141 6.98543 7.50882 8.97916 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005672 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.491429 B = 4935.061463 C = 5791.669230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.107 3.893 4 H 0.066 0.934 5 C 0.029 3.971 6 N -0.526 5.526 7 C 0.200 3.800 8 C -0.509 4.509 9 H 0.060 0.940 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.951 3.049 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.069 3.931 17 C -0.063 4.063 18 C 0.245 3.755 19 N -0.493 5.493 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.128 4.128 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.056 0.944 29 H -0.002 1.002 30 H 0.000 1.000 31 H 0.261 0.739 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -2.778 14.951 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.307 6.307 3 C 0.049 3.951 4 H 0.084 0.916 5 C -0.099 4.099 6 N -0.248 5.248 7 C 0.074 3.926 8 C -0.548 4.548 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.573 5.573 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.061 4.061 17 C -0.105 4.105 18 C -0.072 4.072 19 N -0.171 5.171 20 C -0.131 4.131 21 C -0.171 4.171 22 C -0.173 4.173 23 C -0.165 4.165 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.120 -2.117 15.580 16.536 hybrid contribution -0.332 0.444 -1.529 1.627 sum 4.789 -1.672 14.050 14.938 Atomic orbital electron populations 1.22909 0.80800 1.02371 1.00820 1.87778 1.20212 1.27726 1.94947 1.21973 0.94951 0.84862 0.93319 0.91573 1.22793 0.91062 1.00231 0.95847 1.62250 1.17053 1.41108 1.04437 1.19525 0.95621 0.94438 0.82989 1.21501 0.98890 1.41924 0.92476 0.92198 1.25678 0.99304 0.95591 0.98489 1.70047 1.31749 1.47669 1.07801 0.85598 0.80498 0.77542 0.78564 1.18967 1.21059 1.21072 1.22109 0.97667 0.86071 1.00259 1.20188 0.99353 0.89425 1.01530 1.29338 0.92595 0.93346 0.91949 1.81178 1.11331 1.12558 1.12043 1.22767 0.94488 0.99571 0.96258 1.22809 0.99069 0.98177 0.97000 1.22815 0.97797 1.00697 0.95990 1.22821 0.98273 0.99951 0.95472 0.90445 0.94079 0.92407 0.92163 0.92594 0.98481 0.98231 0.93039 0.91288 0.89487 0.85008 0.87584 0.86930 0.90868 0.91864 0.89266 0.91641 0.90731 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.39 113.37 1.18 1.91 16 2 O -0.39 -11.06 8.44 -148.98 -1.26 -12.32 16 3 C 0.11 2.61 2.20 30.59 0.07 2.68 16 4 H 0.07 1.50 5.97 -2.39 -0.01 1.48 16 5 C 0.03 0.83 4.36 86.30 0.38 1.21 16 6 N -0.53 -18.41 2.87 -900.79 -2.58 -20.99 16 7 C 0.20 9.14 4.63 85.56 0.40 9.53 16 8 C -0.51 -26.27 8.60 25.60 0.22 -26.05 16 9 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 10 C 0.01 0.39 5.46 84.65 0.46 0.85 16 11 N -0.93 -52.82 13.29 21.45 0.28 -52.54 16 12 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 C 0.07 2.06 4.28 86.31 0.37 2.43 16 17 C -0.06 -1.66 5.08 28.79 0.15 -1.52 16 18 C 0.24 7.11 15.43 89.44 1.38 8.49 16 19 N -0.49 -16.55 18.54 20.01 0.37 -16.18 16 20 C -0.11 -2.24 3.58 -10.27 -0.04 -2.27 16 21 C -0.13 -2.82 7.49 31.18 0.23 -2.59 16 22 C -0.14 -2.31 8.09 31.18 0.25 -2.06 16 23 C -0.13 -2.29 7.54 31.12 0.23 -2.06 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.06 1.81 5.68 -2.39 -0.01 1.80 16 27 H 0.06 2.00 7.83 -2.38 -0.02 1.99 16 28 H 0.06 1.39 5.99 -2.39 -0.01 1.37 16 29 H 0.00 -0.11 5.84 -2.38 -0.01 -0.13 16 30 H 0.00 -0.02 7.75 -2.39 -0.02 -0.04 16 31 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.07 2.39 7.52 -2.38 -0.02 2.37 16 33 H 0.09 2.20 6.04 -2.39 -0.01 2.18 16 34 H 0.13 2.68 6.21 -2.38 -0.01 2.67 16 35 H 0.11 3.24 6.27 -2.39 -0.01 3.23 16 36 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.88 7.03 -2.39 -0.02 1.86 16 38 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.07 1.50 7.72 -2.39 -0.02 1.48 16 Total: -1.00 -60.53 333.98 5.12 -55.41 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.00 Total: 11.23 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.28 Total: -9.44 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -1.93 Total: -89.71 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.26 Total: -12.32 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -60.53 5.12 -55.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.627 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds