Wall clock time and date at job start Mon Mar 30 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 H 1.09001 * 109.47503 * 30.00016 * 3 2 1 5 5 C 1.53003 * 109.47272 * 150.00430 * 3 2 1 6 6 N 1.46892 * 109.46788 * 299.31638 * 5 3 2 7 7 C 1.46904 * 110.99854 * 164.47804 * 6 5 3 8 8 C 1.50705 * 109.47247 * 189.99570 * 7 6 5 9 9 H 1.07999 * 119.99742 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00226 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99614 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00128 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46898 * 90.00064 * 12 10 8 14 14 H 1.48493 * 109.47223 * 210.00226 * 12 10 8 15 15 H 1.48501 * 109.47135 * 330.00228 * 12 10 8 16 16 C 1.46905 * 111.00040 * 288.42762 * 6 5 3 17 17 C 1.52999 * 109.46965 * 298.45287 * 16 6 5 18 18 C 1.47202 * 109.46703 * 183.60716 * 17 16 6 19 19 N 6.71132 * 97.53011 * 42.04128 * 2 1 3 20 20 C 1.53005 * 109.47213 * 270.00111 * 3 2 1 21 21 C 1.53778 * 113.61620 * 157.49718 * 20 3 2 22 22 C 1.53786 * 87.08093 * 220.02228 * 21 20 3 23 23 C 1.53780 * 87.08331 * 25.43120 * 22 21 20 24 24 H 1.08996 * 109.47433 * 59.99500 * 1 2 3 25 25 H 1.09009 * 109.46762 * 299.99564 * 1 2 3 26 26 H 1.09001 * 109.47388 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46841 * 59.31741 * 5 3 2 28 28 H 1.09002 * 109.47002 * 179.31470 * 5 3 2 29 29 H 1.08994 * 109.47166 * 309.99424 * 7 6 5 30 30 H 1.08999 * 109.46968 * 69.99913 * 7 6 5 31 31 H 0.97010 * 120.00068 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.46655 * 58.45450 * 16 6 5 33 33 H 1.09001 * 109.47197 * 178.45496 * 16 6 5 34 34 H 1.08991 * 109.47547 * 303.61049 * 17 16 6 35 35 H 1.09001 * 109.46916 * 63.61328 * 17 16 6 36 36 H 1.08998 * 112.85179 * 288.80576 * 20 3 2 37 37 H 1.09002 * 113.61238 * 334.56589 * 21 20 3 38 38 H 1.08995 * 113.61232 * 105.47419 * 21 20 3 39 39 H 1.09002 * 113.61163 * 270.88166 * 22 21 20 40 40 H 1.08999 * 113.69470 * 139.99353 * 22 21 20 41 41 H 1.08998 * 113.61702 * 220.02283 * 23 22 21 42 42 H 1.09003 * 113.61136 * 89.11296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 7 3.1578 0.8316 2.1108 7 6 4.4290 0.4258 2.7252 8 6 4.1571 -0.2364 4.0514 9 1 3.1416 -0.3453 4.4024 10 6 5.2048 -0.7041 4.8160 11 7 6.4413 -0.5719 4.3882 12 14 4.8677 -1.5255 6.4595 13 1 4.6902 -2.9857 6.2558 14 1 6.0126 -1.2890 7.3750 15 1 3.6324 -0.9548 7.0540 16 6 2.5042 1.8845 2.8997 17 6 3.3962 3.1272 2.9298 18 6 2.7822 4.1511 3.7910 19 7 2.3085 4.9413 4.4556 20 6 2.2176 1.7714 -1.4425 21 6 2.3076 3.2995 -1.5894 22 6 1.4684 3.1471 -2.8691 23 6 0.9161 1.8485 -2.2582 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 4.0201 0.5603 0.2143 28 1 3.8078 2.2565 0.7105 29 1 4.9429 -0.2752 2.0676 30 1 5.0548 1.3048 2.8795 31 1 7.1784 -0.9013 4.9260 32 1 1.5456 2.1361 2.4461 33 1 2.3425 1.5286 3.9172 34 1 4.3769 2.8612 3.3241 35 1 3.5055 3.5205 1.9191 36 1 3.0194 1.2347 -1.9496 37 1 1.7979 3.8452 -0.7954 38 1 3.3194 3.6617 -1.7714 39 1 2.0660 2.9878 -3.7667 40 1 0.7156 3.9254 -2.9944 41 1 0.8046 1.0393 -2.9799 42 1 0.0260 1.9976 -1.6469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595396295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:22 Heat of formation + Delta-G solvation = 4.703976 kcal Electronic energy + Delta-G solvation = -20945.767658 eV Core-core repulsion = 17926.986620 eV Total energy + Delta-G solvation = -3018.781038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71113 -37.69842 -36.53951 -35.80545 -32.67886 -30.99736 -29.66192 -26.79590 -26.24677 -25.59459 -24.75299 -23.57823 -21.34809 -19.73416 -19.39712 -17.47659 -16.49444 -16.28859 -15.97745 -15.28167 -14.99614 -14.80444 -14.42039 -13.97491 -13.71100 -13.46802 -13.42433 -12.78480 -12.51559 -12.23274 -12.08381 -12.05124 -11.96450 -11.67692 -11.49829 -11.37797 -11.12725 -10.87197 -10.77809 -10.63910 -10.58003 -10.39655 -10.24793 -10.10549 -9.75224 -9.30047 -8.92992 -8.44553 -7.28536 -6.04589 -4.05317 3.07856 3.10459 3.32974 3.39397 3.42629 4.02371 4.30840 4.42343 4.52754 4.62939 4.66783 4.84098 4.99071 5.22333 5.31566 5.39838 5.44748 5.49047 5.54871 5.60631 5.62339 5.71896 5.75222 5.78898 5.80099 5.83378 5.89528 5.94552 6.04585 6.16441 6.23854 6.36742 6.44678 6.60122 7.21982 7.24517 7.59993 7.77735 7.86719 8.05337 8.12134 8.49144 9.01984 9.59384 11.05943 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.005420 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.975439 B = 5165.280674 C = 5888.994688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.106 3.894 4 H 0.056 0.944 5 C 0.050 3.950 6 N -0.517 5.517 7 C 0.188 3.812 8 C -0.506 4.506 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.071 3.929 17 C -0.076 4.076 18 C 0.225 3.775 19 N -0.462 5.462 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.034 0.966 30 H -0.001 1.001 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 5.686 -13.331 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.276 6.276 3 C 0.047 3.953 4 H 0.074 0.926 5 C -0.079 4.079 6 N -0.239 5.239 7 C 0.063 3.937 8 C -0.545 4.545 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.060 4.060 17 C -0.118 4.118 18 C -0.093 4.093 19 N -0.140 5.140 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.311 6.216 -12.288 16.623 hybrid contribution 0.548 0.104 0.642 0.850 sum -8.763 6.319 -11.646 15.886 Atomic orbital electron populations 1.22874 0.82610 1.02206 0.99349 1.88020 1.18180 1.26768 1.94652 1.22162 0.95398 0.85046 0.92668 0.92598 1.22251 0.95019 0.99316 0.91278 1.62307 1.28107 1.33888 0.99578 1.19860 0.83976 0.95078 0.94784 1.21138 0.93191 1.37638 1.02541 0.91833 1.24940 0.95029 0.96177 0.98232 1.69941 0.98407 1.47078 1.38325 0.86555 0.77722 0.79927 0.83575 1.20626 1.21415 1.19901 1.22100 0.95314 0.87406 1.01141 1.20281 1.02710 0.92080 0.96742 1.29293 0.92965 0.93475 0.93533 1.81141 1.10524 1.11749 1.10593 1.23105 0.98765 0.96212 0.96955 1.22918 1.00537 0.95911 0.97925 1.22827 0.99604 0.98033 0.97573 1.22975 0.97452 0.97743 0.99255 0.94291 0.94529 0.90354 0.90364 0.93852 0.94830 0.98357 0.92932 0.92279 0.89031 0.85937 0.88349 0.88625 0.90204 0.91290 0.90333 0.91789 0.91500 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -5.55 10.17 -35.23 -0.36 -5.90 16 3 C 0.11 1.41 2.02 -26.73 -0.05 1.36 16 4 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 5 C 0.05 0.77 4.50 -3.83 -0.02 0.75 16 6 N -0.52 -9.75 4.54 -236.07 -1.07 -10.82 16 7 C 0.19 4.37 4.52 -4.97 -0.02 4.34 16 8 C -0.51 -13.29 8.48 -34.44 -0.29 -13.58 16 9 H 0.06 1.67 7.11 -52.49 -0.37 1.30 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 12 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.07 1.18 4.96 -3.82 -0.02 1.16 16 17 C -0.08 -1.12 5.06 -29.52 -0.15 -1.27 16 18 C 0.22 3.61 15.43 -20.76 -0.32 3.29 16 19 N -0.46 -8.36 18.54 42.16 0.78 -7.58 16 20 C -0.13 -1.44 3.36 -89.80 -0.30 -1.74 16 21 C -0.14 -1.27 7.63 -25.92 -0.20 -1.47 16 22 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 23 C -0.14 -1.31 6.18 -25.92 -0.16 -1.47 16 24 H 0.04 0.39 4.95 -51.93 -0.26 0.14 16 25 H 0.04 0.44 8.09 -51.92 -0.42 0.02 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.31 7.82 -51.93 -0.41 0.90 16 28 H 0.04 0.59 5.90 -51.93 -0.31 0.28 16 29 H 0.03 0.87 7.87 -51.93 -0.41 0.46 16 30 H 0.00 -0.03 6.01 -51.93 -0.31 -0.34 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.06 0.87 6.61 -51.93 -0.34 0.52 16 33 H 0.09 1.73 6.80 -51.93 -0.35 1.38 16 34 H 0.12 2.03 6.16 -51.93 -0.32 1.71 16 35 H 0.10 1.18 6.39 -51.93 -0.33 0.85 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -29.53 334.94 -7.22 -36.75 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.56 Total: -1.74 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.77 Total: -7.19 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.45 Total: -43.12 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.36 Total: -5.90 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.53 -7.22 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.452 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds