Wall clock time and date at job start Mon Mar 30 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 H 1.09001 * 109.47503 * 30.00016 * 3 2 1 5 5 C 1.53003 * 109.47272 * 150.00430 * 3 2 1 6 6 N 1.46892 * 109.46788 * 299.31638 * 5 3 2 7 7 C 1.46904 * 110.99854 * 164.47804 * 6 5 3 8 8 C 1.50705 * 109.47247 * 189.99570 * 7 6 5 9 9 H 1.07999 * 119.99742 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00226 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99614 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00128 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46898 * 90.00064 * 12 10 8 14 14 H 1.48493 * 109.47223 * 210.00226 * 12 10 8 15 15 H 1.48501 * 109.47135 * 330.00228 * 12 10 8 16 16 C 1.46905 * 111.00040 * 288.42762 * 6 5 3 17 17 C 1.52999 * 109.46965 * 298.45287 * 16 6 5 18 18 C 1.47202 * 109.46703 * 183.60716 * 17 16 6 19 19 N 6.71132 * 97.53011 * 42.04128 * 2 1 3 20 20 C 1.53005 * 109.47213 * 270.00111 * 3 2 1 21 21 C 1.53778 * 113.61620 * 157.49718 * 20 3 2 22 22 C 1.53786 * 87.08093 * 220.02228 * 21 20 3 23 23 C 1.53780 * 87.08331 * 25.43120 * 22 21 20 24 24 H 1.08996 * 109.47433 * 59.99500 * 1 2 3 25 25 H 1.09009 * 109.46762 * 299.99564 * 1 2 3 26 26 H 1.09001 * 109.47388 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46841 * 59.31741 * 5 3 2 28 28 H 1.09002 * 109.47002 * 179.31470 * 5 3 2 29 29 H 1.08994 * 109.47166 * 309.99424 * 7 6 5 30 30 H 1.08999 * 109.46968 * 69.99913 * 7 6 5 31 31 H 0.97010 * 120.00068 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.46655 * 58.45450 * 16 6 5 33 33 H 1.09001 * 109.47197 * 178.45496 * 16 6 5 34 34 H 1.08991 * 109.47547 * 303.61049 * 17 16 6 35 35 H 1.09001 * 109.46916 * 63.61328 * 17 16 6 36 36 H 1.08998 * 112.85179 * 288.80576 * 20 3 2 37 37 H 1.09002 * 113.61238 * 334.56589 * 21 20 3 38 38 H 1.08995 * 113.61232 * 105.47419 * 21 20 3 39 39 H 1.09002 * 113.61163 * 270.88166 * 22 21 20 40 40 H 1.08999 * 113.69470 * 139.99353 * 22 21 20 41 41 H 1.08998 * 113.61702 * 220.02283 * 23 22 21 42 42 H 1.09003 * 113.61136 * 89.11296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 7 3.1578 0.8316 2.1108 7 6 4.4290 0.4258 2.7252 8 6 4.1571 -0.2364 4.0514 9 1 3.1416 -0.3453 4.4024 10 6 5.2048 -0.7041 4.8160 11 7 6.4413 -0.5719 4.3882 12 14 4.8677 -1.5255 6.4595 13 1 4.6902 -2.9857 6.2558 14 1 6.0126 -1.2890 7.3750 15 1 3.6324 -0.9548 7.0540 16 6 2.5042 1.8845 2.8997 17 6 3.3962 3.1272 2.9298 18 6 2.7822 4.1511 3.7910 19 7 2.3085 4.9413 4.4556 20 6 2.2176 1.7714 -1.4425 21 6 2.3076 3.2995 -1.5894 22 6 1.4684 3.1471 -2.8691 23 6 0.9161 1.8485 -2.2582 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 4.0201 0.5603 0.2143 28 1 3.8078 2.2565 0.7105 29 1 4.9429 -0.2752 2.0676 30 1 5.0548 1.3048 2.8795 31 1 7.1784 -0.9013 4.9260 32 1 1.5456 2.1361 2.4461 33 1 2.3425 1.5286 3.9172 34 1 4.3769 2.8612 3.3241 35 1 3.5055 3.5205 1.9191 36 1 3.0194 1.2347 -1.9496 37 1 1.7979 3.8452 -0.7954 38 1 3.3194 3.6617 -1.7714 39 1 2.0660 2.9878 -3.7667 40 1 0.7156 3.9254 -2.9944 41 1 0.8046 1.0393 -2.9799 42 1 0.0260 1.9976 -1.6469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595396295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:22 Heat of formation + Delta-G solvation = -13.322524 kcal Electronic energy + Delta-G solvation = -20946.549345 eV Core-core repulsion = 17926.986620 eV Total energy + Delta-G solvation = -3019.562726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68005 -38.98918 -37.59717 -37.17380 -34.67957 -32.21177 -31.11581 -28.44505 -27.16252 -26.38915 -25.94982 -25.16724 -22.61794 -21.03989 -20.25779 -18.84375 -18.22600 -17.53338 -17.09227 -16.52091 -16.25820 -16.08451 -15.74048 -15.30216 -15.07677 -14.83095 -14.41382 -14.28951 -13.65233 -13.52979 -13.37921 -13.23868 -13.01422 -12.89910 -12.79809 -12.74535 -12.59752 -12.43270 -12.25848 -11.96407 -11.83932 -11.70977 -11.33982 -11.28067 -11.03501 -10.89783 -10.51683 -9.98406 -8.80507 -8.12234 -6.18622 1.43954 1.45429 1.54503 1.76349 1.79943 2.45239 2.95976 3.09852 3.22071 3.40069 3.78952 3.91183 3.95581 4.08199 4.13812 4.23469 4.27010 4.51364 4.54656 4.58114 4.69031 4.70398 4.78763 4.86333 4.92994 4.95027 4.99655 5.04371 5.15506 5.16415 5.19699 5.22393 5.41007 5.44000 5.46236 5.67226 5.75308 6.16841 6.41074 6.58987 6.59510 6.78051 6.97652 7.50070 8.97622 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.005420 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.975439 B = 5165.280674 C = 5888.994688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.111 3.889 4 H 0.066 0.934 5 C 0.050 3.950 6 N -0.528 5.528 7 C 0.202 3.798 8 C -0.514 4.514 9 H 0.058 0.942 10 C 0.009 3.991 11 N -0.930 5.930 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.074 3.926 17 C -0.063 4.063 18 C 0.245 3.755 19 N -0.494 5.494 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.135 4.135 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.001 0.999 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 6.755 -14.152 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C 0.053 3.947 4 H 0.084 0.916 5 C -0.078 4.078 6 N -0.250 5.250 7 C 0.076 3.924 8 C -0.552 4.552 9 H 0.077 0.923 10 C -0.189 4.189 11 N -0.571 5.571 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.071 4.071 19 N -0.173 5.173 20 C -0.154 4.154 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.173 4.173 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.019 0.981 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.635 7.293 -13.120 18.396 hybrid contribution 0.921 -0.255 0.847 1.277 sum -9.714 7.038 -12.273 17.161 Atomic orbital electron populations 1.23009 0.81036 1.02892 1.00384 1.87973 1.20062 1.28138 1.94934 1.22166 0.93909 0.84626 0.94008 0.91599 1.22337 0.96593 0.99796 0.89094 1.62151 1.25799 1.35854 1.01233 1.19488 0.85732 0.93964 0.93172 1.21470 0.92841 1.37216 1.03698 0.92331 1.25669 0.94938 0.96956 1.01380 1.70043 0.99125 1.48333 1.39593 0.85646 0.77657 0.78944 0.79956 1.20378 1.21160 1.19328 1.22026 0.96548 0.87367 0.99644 1.20192 1.00987 0.90991 0.98296 1.29352 0.92108 0.92898 0.92782 1.81168 1.11537 1.12981 1.11576 1.23075 0.99564 0.97433 0.95357 1.22946 1.01177 0.94324 0.98576 1.22800 0.99603 0.97583 0.97333 1.22979 0.96806 0.98413 0.99054 0.92153 0.94476 0.90024 0.92347 0.91533 0.98115 0.98851 0.92960 0.89640 0.91689 0.87647 0.84792 0.89551 0.89573 0.90810 0.89840 0.90659 0.91598 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.57 113.37 1.20 1.72 16 2 O -0.39 -11.75 10.17 -148.98 -1.52 -13.27 16 3 C 0.11 2.77 2.02 30.60 0.06 2.83 16 4 H 0.07 1.50 6.14 -2.39 -0.01 1.49 16 5 C 0.05 1.49 4.50 86.31 0.39 1.88 16 6 N -0.53 -19.77 4.54 -900.78 -4.09 -23.86 16 7 C 0.20 9.61 4.52 85.56 0.39 10.00 16 8 C -0.51 -27.33 8.48 25.60 0.22 -27.11 16 9 H 0.06 3.11 7.11 -2.91 -0.02 3.09 16 10 C 0.01 0.48 5.46 84.65 0.46 0.94 16 11 N -0.93 -53.59 13.29 21.45 0.28 -53.31 16 12 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 C 0.07 2.37 4.96 86.30 0.43 2.80 16 17 C -0.06 -1.73 5.06 28.79 0.15 -1.59 16 18 C 0.25 7.45 15.43 89.44 1.38 8.84 16 19 N -0.49 -17.19 18.54 20.01 0.37 -16.82 16 20 C -0.14 -2.69 3.36 -10.26 -0.03 -2.72 16 21 C -0.13 -2.08 7.63 31.12 0.24 -1.85 16 22 C -0.14 -1.90 8.08 31.12 0.25 -1.65 16 23 C -0.14 -2.23 6.18 31.12 0.19 -2.04 16 24 H 0.06 1.08 4.95 -2.39 -0.01 1.06 16 25 H 0.04 0.81 8.09 -2.38 -0.02 0.79 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.98 7.82 -2.39 -0.02 1.96 16 28 H 0.07 1.66 5.90 -2.39 -0.01 1.65 16 29 H 0.00 0.04 7.87 -2.39 -0.02 0.02 16 30 H -0.01 -0.29 6.01 -2.39 -0.01 -0.30 16 31 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 32 H 0.09 2.29 6.61 -2.39 -0.02 2.28 16 33 H 0.06 2.43 6.80 -2.39 -0.02 2.42 16 34 H 0.11 3.40 6.16 -2.39 -0.01 3.39 16 35 H 0.13 2.76 6.39 -2.39 -0.02 2.74 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.27 7.96 -2.39 -0.02 1.25 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.33 6.33 -2.39 -0.02 1.31 16 Total: -1.00 -63.80 334.94 3.40 -60.40 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.01 Total: 9.08 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.32 Total: -7.96 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.43 Total: -93.98 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.52 Total: -13.27 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.80 3.40 -60.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.082 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds