Wall clock time and date at job start Mon Mar 30 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 N 1.46499 * 109.47082 * 119.99897 * 2 1 3 5 5 N 1.40445 * 126.82117 * 299.97374 * 4 2 1 6 6 C 1.30712 * 106.79397 * 180.02562 * 5 4 2 7 7 N 1.33239 * 108.94340 * 0.23984 * 6 5 4 8 8 C 1.30828 * 109.83202 * 359.59126 * 7 6 5 9 9 C 1.50699 * 125.96261 * 180.12256 * 8 7 6 10 10 N 1.46900 * 109.46924 * 270.32918 * 9 8 7 11 11 C 1.46907 * 110.99923 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47410 * 300.00082 * 12 11 10 14 14 C 1.52993 * 109.47247 * 60.00215 * 12 11 10 15 15 C 1.50707 * 109.47024 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99514 * 1.36108 * 15 12 11 17 17 C 1.37869 * 120.00022 * 181.35800 * 15 12 11 18 18 N 1.31517 * 120.00015 * 193.95848 * 17 15 12 19 19 Si 1.86807 * 120.00094 * 13.96687 * 17 15 12 20 20 H 1.48499 * 109.46958 * 84.55065 * 19 17 15 21 21 H 1.48494 * 109.46921 * 204.55163 * 19 17 15 22 22 H 1.48500 * 109.46912 * 324.54912 * 19 17 15 23 23 H 1.09006 * 109.47222 * 300.00137 * 1 2 3 24 24 H 1.09005 * 109.47146 * 59.99980 * 1 2 3 25 25 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46686 * 239.99908 * 2 1 3 27 27 H 1.09002 * 109.46793 * 299.99623 * 3 2 1 28 28 H 1.08992 * 109.47128 * 59.99643 * 3 2 1 29 29 H 1.08999 * 109.46925 * 180.02562 * 3 2 1 30 30 H 1.08001 * 125.52651 * 179.97438 * 6 5 4 31 31 H 1.08990 * 109.47284 * 30.33423 * 9 8 7 32 32 H 1.08998 * 109.47051 * 150.33286 * 9 8 7 33 33 H 1.00902 * 110.99773 * 56.05091 * 10 9 8 34 34 H 1.08996 * 109.47187 * 300.00507 * 11 10 9 35 35 H 1.09005 * 109.46699 * 60.00516 * 11 10 9 36 36 H 1.08996 * 109.46909 * 69.31329 * 13 12 11 37 37 H 1.08992 * 109.47511 * 189.31835 * 13 12 11 38 38 H 1.09005 * 109.47105 * 309.32045 * 13 12 11 39 39 H 1.09009 * 109.47299 * 59.99805 * 14 12 11 40 40 H 1.09002 * 109.47416 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47321 * 300.00029 * 14 12 11 42 42 H 0.97005 * 120.00035 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7693 -0.3375 2.5325 6 6 2.3899 -1.2147 3.2768 7 7 3.0136 -2.0880 2.4871 8 6 2.7941 -1.7878 1.2328 9 6 3.3243 -2.5371 0.0376 10 7 4.6273 -1.9808 -0.3504 11 6 5.1763 -2.6888 -1.5148 12 6 6.5308 -2.0830 -1.8879 13 6 6.3508 -0.6025 -2.2294 14 6 7.4937 -2.2205 -0.7069 15 6 7.0936 -2.8089 -3.0827 16 1 6.5305 -3.6064 -3.5446 17 6 8.3273 -2.4547 -3.5862 18 7 8.7009 -2.8826 -4.7724 19 14 9.4682 -1.3672 -2.5835 20 1 10.2440 -2.2058 -1.6348 21 1 10.4018 -0.6570 -3.4940 22 1 8.6656 -0.3746 -1.8248 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 2.3995 -1.2268 4.3567 31 1 3.4400 -3.5907 0.2914 32 1 2.6251 -2.4380 -0.7927 33 1 5.2745 -2.0021 0.4234 34 1 5.3049 -3.7434 -1.2713 35 1 4.4900 -2.5911 -2.3560 36 1 6.1026 -0.0485 -1.3242 37 1 7.2764 -0.2120 -2.6522 38 1 5.5450 -0.4924 -2.9552 39 1 7.6220 -3.2753 -0.4636 40 1 8.4588 -1.7894 -0.9729 41 1 7.0864 -1.6953 0.1570 42 1 9.5691 -2.6338 -5.1265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601127737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:27 Heat of formation + Delta-G solvation = 97.507955 kcal Electronic energy + Delta-G solvation = -20946.002602 eV Core-core repulsion = 17963.538598 eV Total energy + Delta-G solvation = -2982.464004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10075 -37.43190 -36.18150 -34.45605 -31.86363 -31.02531 -30.68128 -27.49600 -26.72095 -26.25454 -25.07959 -23.61816 -23.31188 -21.04549 -20.03839 -18.86431 -17.27468 -16.14127 -15.85677 -15.52902 -15.10316 -14.71473 -14.56194 -14.24867 -13.81884 -13.29959 -13.15286 -12.91898 -12.79181 -12.58799 -12.46503 -12.18524 -12.06316 -11.87102 -11.76350 -11.64939 -11.14961 -10.98715 -10.36500 -10.15780 -10.04167 -9.94682 -9.87885 -9.71211 -9.54395 -9.00605 -8.61053 -8.40632 -8.09855 -6.10860 -4.06986 1.61537 2.27098 2.95686 3.30304 3.39468 3.43611 4.05726 4.29433 4.41643 4.64559 4.68982 4.75117 4.88482 4.93435 5.22344 5.30215 5.36707 5.42682 5.53069 5.58874 5.64050 5.87020 5.91902 6.01005 6.03625 6.21263 6.32013 6.38114 6.47627 6.53649 6.69454 6.78777 6.81469 6.86287 6.99366 7.29170 7.34799 7.50098 7.68547 7.84775 8.14694 8.50674 8.93346 9.55213 11.02402 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.004676 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.735353 B = 5986.057507 C = 6238.239016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 C -0.157 4.157 4 N -0.358 5.358 5 N -0.323 5.323 6 C 0.192 3.808 7 N -0.546 5.546 8 C 0.290 3.710 9 C 0.132 3.868 10 N -0.685 5.685 11 C 0.085 3.915 12 C 0.042 3.958 13 C -0.127 4.127 14 C -0.150 4.150 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.307 1.307 22 H -0.247 1.247 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.213 0.787 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.346 0.654 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 5.429 10.516 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.215 4.215 4 N -0.150 5.150 5 N -0.151 5.151 6 C -0.111 4.111 7 N -0.275 5.275 8 C 0.013 3.987 9 C 0.000 4.000 10 N -0.319 5.319 11 C -0.043 4.043 12 C 0.041 3.959 13 C -0.185 4.185 14 C -0.207 4.207 15 C -0.551 4.551 16 H 0.090 0.910 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.716 3.284 20 H -0.215 1.215 21 H -0.236 1.236 22 H -0.173 1.173 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.166 0.834 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.019 6.299 10.311 19.276 hybrid contribution 1.104 -0.364 0.782 1.401 sum -13.915 5.936 11.093 18.759 Atomic orbital electron populations 1.22141 0.93350 1.02841 1.03464 1.21470 0.95200 0.94640 0.83742 1.22080 1.02614 0.93821 1.03022 1.50493 1.37671 1.21112 1.05683 1.77915 1.25955 1.24192 0.87049 1.25866 0.94347 0.89815 1.01042 1.70472 1.27093 1.30163 0.99761 1.24321 0.91606 0.87728 0.95044 1.20397 0.93829 0.95538 0.90242 1.60707 1.03327 1.57358 1.10510 1.22026 0.97245 0.94570 0.90465 1.18472 0.90199 0.93534 0.93738 1.22080 1.00249 0.97283 0.98850 1.22374 0.99767 1.00261 0.98327 1.20826 1.03531 1.19370 1.11368 0.90968 1.24959 0.98121 0.95381 0.94249 1.69959 1.21158 1.46353 1.15799 0.87322 0.80211 0.81638 0.79183 1.21547 1.23571 1.17259 0.91287 0.90409 0.92205 0.87024 0.90566 0.91578 0.91320 0.77061 0.91599 0.89158 0.83427 0.95350 0.91326 0.95094 0.93680 0.94064 0.93351 0.94175 0.94790 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.47 37.16 0.35 -1.00 16 2 C 0.15 1.57 3.68 -67.93 -0.25 1.32 16 3 C -0.16 -1.57 9.47 37.16 0.35 -1.22 16 4 N -0.36 -4.66 3.28 -51.88 -0.17 -4.83 16 5 N -0.32 -4.43 12.59 29.29 0.37 -4.06 16 6 C 0.19 2.50 13.03 -91.82 -1.20 1.31 16 7 N -0.55 -8.11 11.19 -11.97 -0.13 -8.24 16 8 C 0.29 4.05 7.50 -155.70 -1.17 2.88 16 9 C 0.13 1.72 5.85 -4.98 -0.03 1.69 16 10 N -0.68 -10.58 5.89 -115.06 -0.68 -11.26 16 11 C 0.08 1.53 4.57 -3.82 -0.02 1.52 16 12 C 0.04 0.91 0.57 -155.66 -0.09 0.82 16 13 C -0.13 -2.69 7.55 37.16 0.28 -2.41 16 14 C -0.15 -3.15 7.37 37.15 0.27 -2.87 16 15 C -0.51 -13.65 8.62 -34.44 -0.30 -13.95 16 16 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 17 C 0.07 2.10 5.32 -17.82 -0.09 2.00 16 18 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 19 Si 0.88 21.64 22.79 -169.99 -3.87 17.76 16 20 H -0.29 -7.03 7.10 56.52 0.40 -6.63 16 21 H -0.31 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.25 -5.63 4.65 56.52 0.26 -5.37 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.11 1.10 6.74 -51.93 -0.35 0.75 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.21 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.02 7.13 -51.93 -0.37 0.65 16 33 H 0.35 5.62 6.76 -39.29 -0.27 5.36 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.60 7.88 -51.93 -0.41 0.19 16 37 H 0.04 1.02 4.30 -51.93 -0.22 0.80 16 38 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 41 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -30.82 327.08 -7.51 -38.33 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.84 Total: 3.35 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.88 Total: -9.92 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.16 Total: -54.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -3.87 Total: 17.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.82 -7.51 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601127737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.836 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds