Wall clock time and date at job start Mon Mar 30 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 N 1.46499 * 109.47082 * 119.99897 * 2 1 3 5 5 N 1.40445 * 126.82117 * 299.97374 * 4 2 1 6 6 C 1.30712 * 106.79397 * 180.02562 * 5 4 2 7 7 N 1.33239 * 108.94340 * 0.23984 * 6 5 4 8 8 C 1.30828 * 109.83202 * 359.59126 * 7 6 5 9 9 C 1.50699 * 125.96261 * 180.12256 * 8 7 6 10 10 N 1.46900 * 109.46924 * 270.32918 * 9 8 7 11 11 C 1.46907 * 110.99923 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47410 * 300.00082 * 12 11 10 14 14 C 1.52993 * 109.47247 * 60.00215 * 12 11 10 15 15 C 1.50707 * 109.47024 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99514 * 1.36108 * 15 12 11 17 17 C 1.37869 * 120.00022 * 181.35800 * 15 12 11 18 18 N 1.31517 * 120.00015 * 193.95848 * 17 15 12 19 19 Si 1.86807 * 120.00094 * 13.96687 * 17 15 12 20 20 H 1.48499 * 109.46958 * 84.55065 * 19 17 15 21 21 H 1.48494 * 109.46921 * 204.55163 * 19 17 15 22 22 H 1.48500 * 109.46912 * 324.54912 * 19 17 15 23 23 H 1.09006 * 109.47222 * 300.00137 * 1 2 3 24 24 H 1.09005 * 109.47146 * 59.99980 * 1 2 3 25 25 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46686 * 239.99908 * 2 1 3 27 27 H 1.09002 * 109.46793 * 299.99623 * 3 2 1 28 28 H 1.08992 * 109.47128 * 59.99643 * 3 2 1 29 29 H 1.08999 * 109.46925 * 180.02562 * 3 2 1 30 30 H 1.08001 * 125.52651 * 179.97438 * 6 5 4 31 31 H 1.08990 * 109.47284 * 30.33423 * 9 8 7 32 32 H 1.08998 * 109.47051 * 150.33286 * 9 8 7 33 33 H 1.00902 * 110.99773 * 56.05091 * 10 9 8 34 34 H 1.08996 * 109.47187 * 300.00507 * 11 10 9 35 35 H 1.09005 * 109.46699 * 60.00516 * 11 10 9 36 36 H 1.08996 * 109.46909 * 69.31329 * 13 12 11 37 37 H 1.08992 * 109.47511 * 189.31835 * 13 12 11 38 38 H 1.09005 * 109.47105 * 309.32045 * 13 12 11 39 39 H 1.09009 * 109.47299 * 59.99805 * 14 12 11 40 40 H 1.09002 * 109.47416 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47321 * 300.00029 * 14 12 11 42 42 H 0.97005 * 120.00035 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7693 -0.3375 2.5325 6 6 2.3899 -1.2147 3.2768 7 7 3.0136 -2.0880 2.4871 8 6 2.7941 -1.7878 1.2328 9 6 3.3243 -2.5371 0.0376 10 7 4.6273 -1.9808 -0.3504 11 6 5.1763 -2.6888 -1.5148 12 6 6.5308 -2.0830 -1.8879 13 6 6.3508 -0.6025 -2.2294 14 6 7.4937 -2.2205 -0.7069 15 6 7.0936 -2.8089 -3.0827 16 1 6.5305 -3.6064 -3.5446 17 6 8.3273 -2.4547 -3.5862 18 7 8.7009 -2.8826 -4.7724 19 14 9.4682 -1.3672 -2.5835 20 1 10.2440 -2.2058 -1.6348 21 1 10.4018 -0.6570 -3.4940 22 1 8.6656 -0.3746 -1.8248 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 2.3995 -1.2268 4.3567 31 1 3.4400 -3.5907 0.2914 32 1 2.6251 -2.4380 -0.7927 33 1 5.2745 -2.0021 0.4234 34 1 5.3049 -3.7434 -1.2713 35 1 4.4900 -2.5911 -2.3560 36 1 6.1026 -0.0485 -1.3242 37 1 7.2764 -0.2120 -2.6522 38 1 5.5450 -0.4924 -2.9552 39 1 7.6220 -3.2753 -0.4636 40 1 8.4588 -1.7894 -0.9729 41 1 7.0864 -1.6953 0.1570 42 1 9.5691 -2.6338 -5.1265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601127737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:27 Heat of formation + Delta-G solvation = 77.619629 kcal Electronic energy + Delta-G solvation = -20946.865025 eV Core-core repulsion = 17963.538598 eV Total energy + Delta-G solvation = -2983.326427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.08785 -38.98056 -37.02337 -35.89996 -33.75912 -32.11236 -31.76031 -28.21045 -28.03533 -27.87704 -27.02502 -24.94778 -24.35513 -22.01078 -21.02435 -20.55227 -18.32255 -17.99397 -17.37644 -16.76417 -16.39310 -15.73830 -15.61670 -15.24497 -15.14666 -14.79232 -14.63203 -14.29203 -14.12737 -13.79588 -13.71136 -13.57370 -13.19482 -13.15159 -12.92341 -12.48650 -12.42343 -12.27840 -11.97580 -11.91643 -11.86457 -11.58037 -10.97126 -10.95071 -10.70491 -10.54631 -10.54280 -10.32573 -9.37662 -8.26785 -6.24942 0.60975 1.36327 1.37095 1.40599 1.49823 1.94671 2.37266 3.03006 3.11277 3.46934 3.52334 3.80433 3.94712 4.01364 4.12546 4.24485 4.40984 4.50594 4.53123 4.58695 4.67121 4.71686 4.80031 4.82103 4.89625 4.91067 5.04950 5.13118 5.17099 5.18162 5.22444 5.32600 5.38480 5.53894 5.62390 5.74636 5.87340 5.87928 6.04940 6.30276 6.44375 6.81347 7.14964 7.40537 8.90073 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.004676 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.735353 B = 5986.057507 C = 6238.239016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 C -0.151 4.151 4 N -0.357 5.357 5 N -0.338 5.338 6 C 0.187 3.813 7 N -0.570 5.570 8 C 0.280 3.720 9 C 0.136 3.864 10 N -0.679 5.679 11 C 0.099 3.901 12 C 0.036 3.964 13 C -0.121 4.121 14 C -0.149 4.149 15 C -0.507 4.507 16 H 0.036 0.964 17 C 0.020 3.980 18 N -0.946 5.946 19 Si 0.937 3.063 20 H -0.287 1.287 21 H -0.318 1.318 22 H -0.216 1.216 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.243 0.757 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.343 0.657 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 6.687 12.096 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 C -0.209 4.209 4 N -0.148 5.148 5 N -0.167 5.167 6 C -0.115 4.115 7 N -0.299 5.299 8 C 0.003 3.997 9 C 0.005 3.995 10 N -0.312 5.312 11 C -0.030 4.030 12 C 0.035 3.965 13 C -0.179 4.179 14 C -0.206 4.206 15 C -0.546 4.546 16 H 0.055 0.945 17 C -0.177 4.177 18 N -0.587 5.587 19 Si 0.768 3.232 20 H -0.215 1.215 21 H -0.247 1.247 22 H -0.140 1.140 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.316 7.572 11.911 21.574 hybrid contribution 1.385 -0.804 0.280 1.626 sum -14.931 6.768 12.192 20.430 Atomic orbital electron populations 1.22094 0.91841 1.02914 1.04143 1.21775 0.96439 0.94631 0.83056 1.22035 1.01232 0.93814 1.03820 1.50705 1.37184 1.20828 1.06079 1.77886 1.26492 1.24749 0.87527 1.26510 0.93558 0.89067 1.02364 1.70461 1.27946 1.31122 1.00419 1.24356 0.92081 0.88220 0.95037 1.20426 0.92811 0.95484 0.90809 1.60601 1.04045 1.57015 1.09583 1.21699 0.95469 0.94172 0.91642 1.18475 0.92183 0.93669 0.92215 1.21975 0.99484 0.96606 0.99791 1.22309 0.98775 1.00658 0.98828 1.21180 1.02870 1.18115 1.12404 0.94533 1.25714 0.99848 0.97179 0.94973 1.70099 1.21722 1.48958 1.17872 0.86462 0.78277 0.80717 0.77777 1.21457 1.24735 1.13993 0.92296 0.87997 0.92415 0.86272 0.88217 0.92351 0.93262 0.74142 0.91231 0.87188 0.83737 0.95825 0.91268 0.92890 0.95358 0.93860 0.93445 0.95459 0.91865 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.47 71.98 0.68 -1.50 16 2 C 0.14 2.59 3.68 44.99 0.17 2.75 16 3 C -0.15 -2.68 9.47 71.98 0.68 -2.00 16 4 N -0.36 -8.53 3.28 -318.05 -1.04 -9.58 16 5 N -0.34 -8.66 12.59 -61.25 -0.77 -9.43 16 6 C 0.19 4.51 13.03 180.77 2.36 6.87 16 7 N -0.57 -15.84 11.19 -191.78 -2.15 -17.98 16 8 C 0.28 7.22 7.50 138.23 1.04 8.25 16 9 C 0.14 3.22 5.85 85.56 0.50 3.72 16 10 N -0.68 -19.15 5.89 -517.93 -3.05 -22.20 16 11 C 0.10 3.38 4.57 86.30 0.39 3.78 16 12 C 0.04 1.49 0.57 -52.93 -0.03 1.46 16 13 C -0.12 -4.82 7.55 71.98 0.54 -4.27 16 14 C -0.15 -5.84 7.37 71.98 0.53 -5.31 16 15 C -0.51 -27.14 8.62 25.60 0.22 -26.92 16 16 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 17 C 0.02 1.13 5.32 84.65 0.45 1.58 16 18 N -0.95 -58.27 13.96 21.44 0.30 -57.97 16 19 Si 0.94 44.37 22.79 68.60 1.56 45.93 16 20 H -0.29 -13.42 7.10 99.48 0.71 -12.72 16 21 H -0.32 -15.48 7.11 99.48 0.71 -14.78 16 22 H -0.22 -9.11 4.65 99.48 0.46 -8.64 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.12 1.99 6.74 -2.39 -0.02 1.97 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.24 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 2.16 7.13 -2.39 -0.02 2.14 16 33 H 0.34 10.13 6.76 -89.69 -0.61 9.52 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 2.36 8.14 -2.38 -0.02 2.35 16 36 H 0.05 1.87 7.88 -2.39 -0.02 1.85 16 37 H 0.03 1.20 4.30 -2.39 -0.01 1.19 16 38 H 0.04 1.67 8.12 -2.38 -0.02 1.65 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.03 1.14 2.25 -2.39 -0.01 1.14 16 41 H 0.06 2.11 6.57 -2.39 -0.02 2.09 16 42 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -66.73 327.08 2.54 -64.19 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.16 Total: 18.64 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 7.53 Total: -11.60 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.71 Total: -117.17 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.56 Total: 45.93 kcal Total: -66.73 2.54 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601127737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.812 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds