Wall clock time and date at job start Mon Mar 30 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.53002 * 109.47000 * 119.99973 * 2 1 3 5 5 C 1.53782 * 113.61195 * 180.02562 * 4 2 1 6 6 C 1.53785 * 87.07859 * 219.93267 * 5 4 2 7 7 N 1.46893 * 113.61466 * 139.98040 * 6 5 4 8 8 C 1.46902 * 110.99965 * 156.52839 * 7 6 5 9 9 C 1.53039 * 109.46023 * 204.99827 * 8 7 6 10 10 C 1.53194 * 109.31339 * 178.62784 * 9 8 7 11 11 N 1.46929 * 108.77338 * 54.63818 * 10 9 8 12 12 C 1.36938 * 120.63009 * 126.37152 * 11 10 9 13 13 H 1.08000 * 119.99931 * 332.58030 * 12 11 10 14 14 C 1.38813 * 119.99821 * 152.58705 * 12 11 10 15 15 N 1.31618 * 119.99991 * 342.49595 * 14 12 11 16 16 Si 1.86805 * 119.99781 * 162.77271 * 14 12 11 17 17 H 1.48502 * 109.47245 * 90.00017 * 16 14 12 18 18 H 1.48506 * 109.46782 * 209.99585 * 16 14 12 19 19 H 1.48502 * 109.47140 * 329.99565 * 16 14 12 20 20 C 1.46929 * 118.73866 * 306.64350 * 11 10 9 21 21 C 1.52760 * 109.00960 * 53.30862 * 20 11 10 22 22 C 1.53779 * 87.17257 * 25.38955 * 6 5 4 23 23 H 1.08994 * 109.47041 * 300.00173 * 1 2 3 24 24 H 1.08996 * 109.46807 * 60.00418 * 1 2 3 25 25 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47041 * 239.99827 * 2 1 3 27 27 H 1.08997 * 109.46503 * 299.99666 * 3 2 1 28 28 H 1.08992 * 109.46930 * 59.99712 * 3 2 1 29 29 H 1.09002 * 109.46644 * 180.02562 * 3 2 1 30 30 H 1.08999 * 112.84610 * 311.19601 * 4 2 1 31 31 H 1.08994 * 113.61665 * 105.38757 * 5 4 2 32 32 H 1.09000 * 113.61331 * 334.47614 * 5 4 2 33 33 H 1.09003 * 113.61529 * 270.79972 * 6 5 4 34 34 H 1.00904 * 111.00236 * 280.48139 * 7 6 5 35 35 H 1.08994 * 109.46550 * 324.97538 * 8 7 6 36 36 H 1.09000 * 109.49989 * 58.67900 * 9 8 7 37 37 H 1.09000 * 109.52347 * 298.59454 * 9 8 7 38 38 H 1.08997 * 109.58900 * 294.85354 * 10 9 8 39 39 H 1.08997 * 109.70721 * 174.49177 * 10 9 8 40 40 H 0.97003 * 120.00096 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.58872 * 173.15048 * 20 11 10 42 42 H 1.09003 * 109.58399 * 293.56745 * 20 11 10 43 43 H 1.08994 * 109.56594 * 185.55179 * 21 20 11 44 44 H 1.09001 * 109.38476 * 65.51623 * 21 20 11 45 45 H 1.09002 * 113.61878 * 89.16037 * 22 6 5 46 46 H 1.09007 * 113.61476 * 220.06325 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5738 -0.7762 1.3458 6 6 3.4110 -2.2146 1.8650 7 7 4.4129 -3.1487 1.3344 8 6 4.5809 -4.3034 2.2269 9 6 5.9750 -4.9026 2.0284 10 6 6.1591 -6.0851 2.9848 11 7 5.0584 -7.0362 2.7782 12 6 5.3162 -8.3555 2.5168 13 1 6.2392 -8.6399 2.0335 14 6 4.3911 -9.3272 2.8731 15 7 3.4488 -9.0491 3.7489 16 14 4.4883 -11.0318 2.1153 17 1 5.3518 -11.8990 2.9565 18 1 3.1257 -11.6171 2.0369 19 1 5.0646 -10.9345 0.7501 20 6 3.6761 -6.5437 2.8512 21 6 3.5198 -5.3572 1.9018 22 6 2.0715 -2.2542 1.1106 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.5573 -0.3764 2.1637 31 1 3.9898 -0.0903 2.0836 32 1 4.0746 -0.7149 0.3796 33 1 3.3043 -2.2785 2.9479 34 1 4.1720 -3.4455 0.4006 35 1 4.4679 -3.9817 3.2621 36 1 6.7300 -4.1447 2.2375 37 1 6.0804 -5.2470 0.9996 38 1 6.1448 -5.7279 4.0145 39 1 7.1102 -6.5773 2.7820 40 1 2.8026 -9.7282 3.9982 41 1 2.9893 -7.3377 2.5579 42 1 3.4552 -6.2247 3.8698 43 1 2.5272 -4.9229 2.0207 44 1 3.6474 -5.6970 0.8740 45 1 2.1607 -2.5976 0.0800 46 1 1.2764 -2.7595 1.6589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617095744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:23 Heat of formation + Delta-G solvation = 17.589946 kcal Electronic energy + Delta-G solvation = -20968.758294 eV Core-core repulsion = 18086.369128 eV Total energy + Delta-G solvation = -2882.389166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73157 -37.63441 -35.06737 -33.39628 -31.46070 -29.81671 -28.78970 -27.57541 -25.30239 -24.96025 -23.72874 -22.00486 -21.42294 -20.37849 -19.70852 -18.81510 -16.79225 -15.63152 -15.46055 -14.91341 -14.66897 -14.00197 -13.85599 -13.62349 -13.48979 -13.36103 -13.03969 -12.74039 -12.50370 -12.32282 -12.18727 -11.91087 -11.75693 -11.45882 -11.33759 -11.14821 -10.98135 -10.75967 -10.66580 -10.57000 -10.38605 -10.24874 -10.19848 -10.00207 -9.93630 -9.58762 -9.36735 -8.46505 -7.93262 -6.63410 -5.76001 -3.17227 3.38719 3.45614 3.48396 4.36171 4.50253 4.52439 4.62123 4.71541 4.96531 5.04345 5.12631 5.26932 5.37654 5.45829 5.46871 5.51285 5.56568 5.64213 5.68127 5.74615 5.77251 5.80106 5.84072 5.96052 6.00260 6.01247 6.08639 6.15371 6.19847 6.28438 6.38922 6.40909 6.59793 6.61703 6.70007 6.73510 6.87493 7.05656 7.38036 7.49941 7.65798 7.74920 7.82438 8.48198 9.24631 9.88904 10.45693 11.32555 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.003691 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.336143 B = 7583.383221 C = 8061.260937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.122 4.122 6 C 0.070 3.930 7 N -0.678 5.678 8 C 0.095 3.905 9 C -0.118 4.118 10 C 0.145 3.855 11 N -0.593 5.593 12 C -0.250 4.250 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.175 3.825 21 C -0.165 4.165 22 C -0.162 4.162 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.338 0.662 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 18.097 -6.099 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.125 4.125 5 C -0.161 4.161 6 C -0.041 4.041 7 N -0.306 5.306 8 C -0.014 4.014 9 C -0.158 4.158 10 C 0.018 3.982 11 N -0.316 5.316 12 C -0.380 4.380 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.730 3.270 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.048 3.952 21 C -0.205 4.205 22 C -0.201 4.201 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.033 0.967 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.209 18.311 -5.760 19.462 hybrid contribution -0.977 -1.419 -0.491 1.791 sum -4.186 16.892 -6.251 18.492 Atomic orbital electron populations 1.21816 0.95503 1.01712 1.01322 1.21067 0.95452 0.96044 0.97744 1.21809 1.01224 0.95981 1.01265 1.22499 0.96651 0.95343 0.98005 1.23096 0.94845 0.96539 1.01571 1.22977 0.89403 0.93115 0.98556 1.60634 1.47238 1.17058 1.05662 1.21568 0.95796 0.88472 0.95571 1.21986 0.95311 0.97701 1.00803 1.20923 0.92249 0.90028 0.95003 1.44056 1.00098 1.04725 1.82703 1.19189 1.04899 0.82184 1.31702 0.91740 1.25021 0.99631 0.97701 0.97445 1.70045 1.19204 1.33731 1.31869 0.86324 0.76884 0.84505 0.79247 1.21408 1.21607 1.20510 1.20596 0.87385 0.93100 0.94101 1.22790 0.97069 0.98977 1.01709 1.23776 0.99381 0.95951 1.01013 0.92890 0.93071 0.92666 0.91347 0.93143 0.92910 0.92482 0.89661 0.91918 0.89955 0.89047 0.84312 0.91501 0.92689 0.92613 0.96652 0.92786 0.93732 0.89668 0.96716 0.93653 0.92797 0.90181 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.86 16 2 C -0.08 -0.74 2.67 -90.61 -0.24 -0.98 16 3 C -0.15 -1.15 8.99 37.16 0.33 -0.82 16 4 C -0.11 -1.03 3.12 -89.72 -0.28 -1.31 16 5 C -0.12 -1.30 6.48 -25.92 -0.17 -1.46 16 6 C 0.07 0.88 3.96 -66.90 -0.27 0.61 16 7 N -0.68 -9.75 6.36 -98.85 -0.63 -10.38 16 8 C 0.10 1.63 2.43 -67.67 -0.16 1.47 16 9 C -0.12 -2.15 5.69 -26.61 -0.15 -2.30 16 10 C 0.14 3.12 6.52 -3.71 -0.02 3.10 16 11 N -0.59 -15.14 3.00 -172.58 -0.52 -15.66 16 12 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 13 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 15 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 16 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.17 4.23 5.28 -3.93 -0.02 4.21 16 21 C -0.16 -3.16 5.32 -26.83 -0.14 -3.30 16 22 C -0.16 -1.82 7.08 -25.83 -0.18 -2.00 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.63 7.96 -51.93 -0.41 0.22 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.09 1.22 7.49 -51.93 -0.39 0.83 16 34 H 0.34 4.76 7.96 -39.29 -0.31 4.45 16 35 H 0.07 1.21 7.47 -51.93 -0.39 0.82 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.80 7.85 -51.93 -0.41 0.40 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 46 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -28.64 350.63 -10.35 -38.99 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.89 Total: 1.69 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.20 Total: -10.86 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.53 Total: -51.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.64 -10.35 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617095744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.582 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds