Wall clock time and date at job start Mon Mar 30 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.53002 * 109.47000 * 119.99973 * 2 1 3 5 5 C 1.53782 * 113.61195 * 180.02562 * 4 2 1 6 6 C 1.53785 * 87.07859 * 219.93267 * 5 4 2 7 7 N 1.46893 * 113.61466 * 139.98040 * 6 5 4 8 8 C 1.46902 * 110.99965 * 156.52839 * 7 6 5 9 9 C 1.53039 * 109.46023 * 204.99827 * 8 7 6 10 10 C 1.53194 * 109.31339 * 178.62784 * 9 8 7 11 11 N 1.46929 * 108.77338 * 54.63818 * 10 9 8 12 12 C 1.36938 * 120.63009 * 126.37152 * 11 10 9 13 13 H 1.08000 * 119.99931 * 332.58030 * 12 11 10 14 14 C 1.38813 * 119.99821 * 152.58705 * 12 11 10 15 15 N 1.31618 * 119.99991 * 342.49595 * 14 12 11 16 16 Si 1.86805 * 119.99781 * 162.77271 * 14 12 11 17 17 H 1.48502 * 109.47245 * 90.00017 * 16 14 12 18 18 H 1.48506 * 109.46782 * 209.99585 * 16 14 12 19 19 H 1.48502 * 109.47140 * 329.99565 * 16 14 12 20 20 C 1.46929 * 118.73866 * 306.64350 * 11 10 9 21 21 C 1.52760 * 109.00960 * 53.30862 * 20 11 10 22 22 C 1.53779 * 87.17257 * 25.38955 * 6 5 4 23 23 H 1.08994 * 109.47041 * 300.00173 * 1 2 3 24 24 H 1.08996 * 109.46807 * 60.00418 * 1 2 3 25 25 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47041 * 239.99827 * 2 1 3 27 27 H 1.08997 * 109.46503 * 299.99666 * 3 2 1 28 28 H 1.08992 * 109.46930 * 59.99712 * 3 2 1 29 29 H 1.09002 * 109.46644 * 180.02562 * 3 2 1 30 30 H 1.08999 * 112.84610 * 311.19601 * 4 2 1 31 31 H 1.08994 * 113.61665 * 105.38757 * 5 4 2 32 32 H 1.09000 * 113.61331 * 334.47614 * 5 4 2 33 33 H 1.09003 * 113.61529 * 270.79972 * 6 5 4 34 34 H 1.00904 * 111.00236 * 280.48139 * 7 6 5 35 35 H 1.08994 * 109.46550 * 324.97538 * 8 7 6 36 36 H 1.09000 * 109.49989 * 58.67900 * 9 8 7 37 37 H 1.09000 * 109.52347 * 298.59454 * 9 8 7 38 38 H 1.08997 * 109.58900 * 294.85354 * 10 9 8 39 39 H 1.08997 * 109.70721 * 174.49177 * 10 9 8 40 40 H 0.97003 * 120.00096 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.58872 * 173.15048 * 20 11 10 42 42 H 1.09003 * 109.58399 * 293.56745 * 20 11 10 43 43 H 1.08994 * 109.56594 * 185.55179 * 21 20 11 44 44 H 1.09001 * 109.38476 * 65.51623 * 21 20 11 45 45 H 1.09002 * 113.61878 * 89.16037 * 22 6 5 46 46 H 1.09007 * 113.61476 * 220.06325 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5738 -0.7762 1.3458 6 6 3.4110 -2.2146 1.8650 7 7 4.4129 -3.1487 1.3344 8 6 4.5809 -4.3034 2.2269 9 6 5.9750 -4.9026 2.0284 10 6 6.1591 -6.0851 2.9848 11 7 5.0584 -7.0362 2.7782 12 6 5.3162 -8.3555 2.5168 13 1 6.2392 -8.6399 2.0335 14 6 4.3911 -9.3272 2.8731 15 7 3.4488 -9.0491 3.7489 16 14 4.4883 -11.0318 2.1153 17 1 5.3518 -11.8990 2.9565 18 1 3.1257 -11.6171 2.0369 19 1 5.0646 -10.9345 0.7501 20 6 3.6761 -6.5437 2.8512 21 6 3.5198 -5.3572 1.9018 22 6 2.0715 -2.2542 1.1106 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.5573 -0.3764 2.1637 31 1 3.9898 -0.0903 2.0836 32 1 4.0746 -0.7149 0.3796 33 1 3.3043 -2.2785 2.9479 34 1 4.1720 -3.4455 0.4006 35 1 4.4679 -3.9817 3.2621 36 1 6.7300 -4.1447 2.2375 37 1 6.0804 -5.2470 0.9996 38 1 6.1448 -5.7279 4.0145 39 1 7.1102 -6.5773 2.7820 40 1 2.8026 -9.7282 3.9982 41 1 2.9893 -7.3377 2.5579 42 1 3.4552 -6.2247 3.8698 43 1 2.5272 -4.9229 2.0207 44 1 3.6474 -5.6970 0.8740 45 1 2.1607 -2.5976 0.0800 46 1 1.2764 -2.7595 1.6589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617095744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:22 Heat of formation + Delta-G solvation = 2.150988 kcal Electronic energy + Delta-G solvation = -20969.427777 eV Core-core repulsion = 18086.369128 eV Total energy + Delta-G solvation = -2883.058649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71819 -39.17660 -36.34166 -34.74943 -33.16966 -31.55328 -30.40992 -28.23105 -26.74041 -26.12045 -24.89483 -23.71579 -23.05009 -21.45439 -20.74401 -20.12860 -18.74019 -16.96809 -16.55792 -16.45035 -15.92395 -15.37510 -15.31117 -14.92308 -14.79517 -14.65315 -14.44132 -14.17559 -13.71699 -13.31542 -13.14607 -13.06513 -12.99634 -12.81901 -12.64900 -12.57453 -12.42994 -12.20957 -12.03053 -11.98847 -11.87743 -11.77921 -11.46790 -11.37412 -11.27658 -10.96903 -10.66766 -10.56614 -9.19006 -8.68974 -7.88506 -5.33484 1.45392 1.46614 1.56867 2.50495 3.20107 3.29974 3.68059 3.70457 3.75860 3.88244 4.00106 4.05529 4.23825 4.27232 4.31079 4.45618 4.54030 4.56426 4.70849 4.73304 4.77188 4.86419 4.86693 4.91910 4.95119 4.97575 5.03282 5.06550 5.08218 5.17381 5.22470 5.25766 5.31991 5.33581 5.37402 5.47427 5.49697 5.50357 5.62786 5.67105 5.70495 6.26374 6.37788 6.55702 7.13548 7.85419 8.37164 9.17773 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.003691 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.336143 B = 7583.383221 C = 8061.260937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.112 4.112 6 C 0.060 3.940 7 N -0.670 5.670 8 C 0.107 3.893 9 C -0.105 4.105 10 C 0.140 3.860 11 N -0.611 5.611 12 C -0.264 4.264 13 H 0.066 0.934 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.270 1.270 20 C 0.182 3.818 21 C -0.147 4.147 22 C -0.160 4.160 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.343 0.657 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.050 0.950 42 H -0.008 1.008 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 19.613 -7.363 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.114 4.114 5 C -0.150 4.150 6 C -0.050 4.050 7 N -0.298 5.298 8 C -0.003 4.003 9 C -0.145 4.145 10 C 0.015 3.985 11 N -0.335 5.335 12 C -0.394 4.394 13 H 0.084 0.916 14 C -0.248 4.248 15 N -0.582 5.582 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.195 1.195 20 C 0.055 3.945 21 C -0.188 4.188 22 C -0.199 4.199 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.010 0.990 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.905 19.862 -7.038 21.272 hybrid contribution -1.052 -1.856 -0.055 2.134 sum -3.957 18.006 -7.093 19.753 Atomic orbital electron populations 1.21808 0.95145 1.01432 1.01901 1.21047 0.95739 0.96464 0.96897 1.21788 1.01156 0.95331 1.01800 1.22435 0.96101 0.94164 0.98734 1.23016 0.95490 0.94899 1.01587 1.23112 0.89756 0.93868 0.98307 1.60625 1.48276 1.15592 1.05318 1.21336 0.94401 0.88707 0.95860 1.21812 0.96560 0.96686 0.99399 1.21077 0.91135 0.90572 0.95756 1.44331 1.01351 1.04834 1.82985 1.19531 1.04986 0.83543 1.31329 0.91598 1.25805 0.99551 1.01425 0.97996 1.70201 1.20003 1.34747 1.33268 0.85279 0.76591 0.79939 0.78664 1.21045 1.21819 1.19506 1.20397 0.86411 0.93740 0.93937 1.22573 0.98817 0.97563 0.99805 1.23742 0.98265 0.97255 1.00674 0.92579 0.92277 0.93378 0.91694 0.92416 0.92629 0.92553 0.89355 0.91362 0.89784 0.89856 0.83837 0.92152 0.90430 0.92944 0.97028 0.92692 0.94150 0.93140 0.99033 0.92264 0.93197 0.90038 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.19 71.98 0.66 -1.45 16 2 C -0.08 -1.26 2.67 -10.79 -0.03 -1.29 16 3 C -0.14 -1.91 8.99 71.98 0.65 -1.27 16 4 C -0.10 -1.65 3.12 -10.21 -0.03 -1.69 16 5 C -0.11 -2.10 6.48 31.12 0.20 -1.90 16 6 C 0.06 1.39 3.96 45.44 0.18 1.57 16 7 N -0.67 -17.92 6.36 -466.64 -2.97 -20.89 16 8 C 0.11 3.54 2.43 44.94 0.11 3.65 16 9 C -0.11 -3.66 5.69 30.67 0.17 -3.48 16 10 C 0.14 6.01 6.52 86.36 0.56 6.58 16 11 N -0.61 -31.65 3.00 -699.91 -2.10 -33.75 16 12 C -0.26 -14.89 9.59 84.03 0.81 -14.08 16 13 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 14 C -0.05 -3.00 4.91 84.86 0.42 -2.59 16 15 N -0.94 -56.50 11.20 21.65 0.24 -56.26 16 16 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.18 9.02 5.28 86.22 0.46 9.47 16 21 C -0.15 -5.60 5.32 30.53 0.16 -5.43 16 22 C -0.16 -3.35 7.08 31.18 0.22 -3.12 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.05 7.96 -2.39 -0.02 1.03 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.76 7.45 -2.39 -0.02 0.74 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.08 2.11 7.49 -2.39 -0.02 2.09 16 34 H 0.34 8.88 7.96 -89.69 -0.71 8.17 16 35 H 0.06 2.11 7.47 -2.39 -0.02 2.10 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.06 2.07 7.85 -2.39 -0.02 2.05 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 1.70 7.66 -2.39 -0.02 1.68 16 46 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -61.58 350.63 1.94 -59.64 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.20 Total: 18.74 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.54 Total: -15.04 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.83 Total: -110.91 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -61.58 1.94 -59.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617095744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.788 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds